MGE detailed information
MGE type: Genomic_island MGE length: 20262 bp
Accession: NZ_CP103965 Location: 2441329..2461590 Organism: Pseudomonas sp. N3-W Replicon: chromosome
Accession: NZ_CP103965 Location: 2441329..2461590 Organism: Pseudomonas sp. N3-W Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYP20_RS11310 (NYP20_11310) | 2436882..2437649 | + | 768 | WP_259502301.1 | ATP-binding cassette domain-containing protein | - |
| NYP20_RS11315 (NYP20_11315) | 2437642..2438583 | - | 942 | WP_259502303.1 | DMT family transporter | - |
| NYP20_RS11320 (NYP20_11320) | 2438682..2439548 | + | 867 | WP_259502304.1 | LysR family transcriptional regulator | - |
| NYP20_RS11325 (NYP20_11325) | 2439689..2440528 | + | 840 | WP_259502306.1 | EcsC family protein | - |
| NYP20_RS11330 (NYP20_11330) | 2440622..2441101 | + | 480 | WP_259502309.1 | GNAT family N-acetyltransferase | - |
| NYP20_RS11335 (NYP20_11335) | 2441329..2442396 | - | 1068 | WP_259502311.1 | fimbrial protein | - |
| NYP20_RS11340 (NYP20_11340) | 2442960..2444273 | - | 1314 | WP_259502312.1 | allantoin permease | - |
| NYP20_RS11345 (NYP20_11345) | 2444385..2445359 | - | 975 | WP_259502314.1 | biotin-dependent carboxyltransferase family protein | - |
| NYP20_RS11350 (NYP20_11350) | 2445356..2446228 | - | 873 | WP_259502316.1 | allophanate hydrolase subunit 1 | - |
| NYP20_RS11355 (NYP20_11355) | 2446225..2447598 | - | 1374 | WP_259502319.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| NYP20_RS11360 (NYP20_11360) | 2447609..2447854 | - | 246 | WP_259502322.1 | acetyl-CoA carboxylase | - |
| NYP20_RS11365 (NYP20_11365) | 2447949..2448707 | - | 759 | WP_259502323.1 | 5-oxoprolinase subunit PxpA | - |
| NYP20_RS11370 (NYP20_11370) | 2448833..2449750 | + | 918 | WP_259502325.1 | LysR family transcriptional regulator | - |
| NYP20_RS11375 (NYP20_11375) | 2449844..2450218 | - | 375 | WP_259502326.1 | hypothetical protein | - |
| NYP20_RS11380 (NYP20_11380) | 2450527..2450796 | + | 270 | WP_259502328.1 | hypothetical protein | - |
| NYP20_RS11385 (NYP20_11385) | 2450953..2452074 | + | 1122 | WP_259502330.1 | DUF2971 domain-containing protein | - |
| NYP20_RS11390 (NYP20_11390) | 2452468..2453127 | + | 660 | WP_259502332.1 | hypothetical protein | - |
| NYP20_RS11395 (NYP20_11395) | 2453344..2454096 | - | 753 | WP_259502334.1 | Cyclic-di-GMP-binding biofilm dispersal mediator protein | VF |
| NYP20_RS11400 (NYP20_11400) | 2454213..2455136 | + | 924 | WP_259502336.1 | HTH-type transcriptional regulator DmlR | VF |
| NYP20_RS11405 (NYP20_11405) | 2455451..2456026 | - | 576 | WP_259502337.1 | HD domain-containing protein | Toxin Detail |
| NYP20_RS11410 (NYP20_11410) | 2456144..2456701 | - | 558 | WP_259502339.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| NYP20_RS11415 (NYP20_11415) | 2457000..2457491 | - | 492 | WP_259502341.1 | hypothetical protein | - |
| NYP20_RS11420 (NYP20_11420) | 2457668..2458630 | - | 963 | WP_259502343.1 | Rap1a/Tai family immunity protein | - |
| NYP20_RS11425 (NYP20_11425) | 2458760..2459590 | - | 831 | WP_259502347.1 | hypothetical protein | - |
| NYP20_RS11430 (NYP20_11430) | 2459871..2460104 | - | 234 | Protein_2244 | transposase domain-containing protein | - |
| NYP20_RS11435 (NYP20_11435) | 2460796..2461590 | + | 795 | WP_259502349.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NYP20_RS11440 (NYP20_11440) | 2461931..2462668 | + | 738 | WP_259502353.1 | tRNA (adenine(22)-N(1))-methyltransferase TrmK | - |
| NYP20_RS11445 (NYP20_11445) | 2462736..2463377 | - | 642 | WP_259502361.1 | NAD(P)H-dependent oxidoreductase | - |
| NYP20_RS11450 (NYP20_11450) | 2463484..2464338 | + | 855 | WP_259502368.1 | LysR substrate-binding domain-containing protein | - |
| NYP20_RS11455 (NYP20_11455) | 2464357..2465286 | - | 930 | WP_259502369.1 | HTH-type transcriptional regulator ArgP | - |
| NYP20_RS11460 (NYP20_11460) | 2465566..2465841 | + | 276 | WP_259502370.1 | hypothetical protein | - |
| NYP20_RS11465 (NYP20_11465) | 2465882..2466166 | + | 285 | WP_259502371.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|