MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 89029 bp
Accession: NZ_CP103873 Location: 1..89029 Organism: Herbaspirillum huttiense strain ZXN111 Replicon: plasmid unnamed
Accession: NZ_CP103873 Location: 1..89029 Organism: Herbaspirillum huttiense strain ZXN111 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NY669_RS26590 (NY669_26590) | 1114..1443 | - | 330 | WP_259435383.1 | helix-turn-helix transcriptional regulator | - |
| NY669_RS26595 (NY669_26595) | 1677..2240 | + | 564 | WP_259435384.1 | recombinase family protein | - |
| NY669_RS26600 (NY669_26600) | 2958..3953 | - | 996 | WP_259435385.1 | plasmid replication initiator TrfA | - |
| NY669_RS26605 (NY669_26605) | 4771..5160 | - | 390 | WP_259435386.1 | hypothetical protein | - |
| NY669_RS26610 (NY669_26610) | 5209..6570 | - | 1362 | WP_259435387.1 | ParB/RepB/Spo0J family partition protein | - |
| NY669_RS26615 (NY669_26615) | 6567..7463 | - | 897 | WP_259435388.1 | ParA family protein | - |
| NY669_RS26620 (NY669_26620) | 7474..7920 | - | 447 | WP_259435389.1 | hypothetical protein | - |
| NY669_RS26625 (NY669_26625) | 8250..8588 | + | 339 | WP_259435390.1 | hypothetical protein | - |
| NY669_RS26630 (NY669_26630) | 8596..9297 | + | 702 | WP_259435391.1 | hypothetical protein | - |
| NY669_RS26635 (NY669_26635) | 9305..9997 | + | 693 | WP_259435392.1 | DsbC family protein | - |
| NY669_RS26640 (NY669_26640) | 9994..10530 | + | 537 | WP_259435393.1 | hypothetical protein | - |
| NY669_RS26645 (NY669_26645) | 10554..10790 | + | 237 | WP_259435394.1 | hypothetical protein | - |
| NY669_RS26650 (NY669_26650) | 10787..11350 | + | 564 | WP_259435395.1 | hypothetical protein | VF |
| NY669_RS26655 (NY669_26655) | 11458..11997 | + | 540 | WP_259435396.1 | conjugal transfer protein | - |
| NY669_RS26660 (NY669_26660) | 11994..13004 | + | 1011 | WP_259435397.1 | TraU family protein | - |
| NY669_RS26665 (NY669_26665) | 13001..13525 | + | 525 | WP_259435398.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NY669_RS26670 (NY669_26670) | 13593..14042 | + | 450 | WP_259435399.1 | hypothetical protein | - |
| NY669_RS26675 (NY669_26675) | 14045..14434 | + | 390 | WP_259435400.1 | hypothetical protein | - |
| NY669_RS26680 (NY669_26680) | 14412..15020 | + | 609 | WP_259435401.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| NY669_RS26685 (NY669_26685) | 15017..15979 | + | 963 | WP_259435402.1 | type-F conjugative transfer system secretin TraK | - |
| NY669_RS26690 (NY669_26690) | 15983..17350 | + | 1368 | WP_259435403.1 | TraB/VirB10 family protein | - |
| NY669_RS26695 (NY669_26695) | 17359..18006 | + | 648 | WP_259435404.1 | TraV family lipoprotein | - |
| NY669_RS26700 (NY669_26700) | 18038..18421 | + | 384 | WP_259435405.1 | hypothetical protein | - |
| NY669_RS26705 (NY669_26705) | 18617..21082 | + | 2466 | WP_259435406.1 | conjugal transfer protein TraC | - |
| NY669_RS26710 (NY669_26710) | 21063..21491 | + | 429 | WP_259435407.1 | hypothetical protein | - |
| NY669_RS26715 (NY669_26715) | 21481..21987 | + | 507 | WP_259435408.1 | signal peptidase I | - |
| NY669_RS26720 (NY669_26720) | 22007..22993 | + | 987 | WP_259435409.1 | conjugal transfer protein TraF | - |
| NY669_RS26725 (NY669_26725) | 23006..24484 | + | 1479 | WP_259435410.1 | conjugal transfer protein TraH | - |
| NY669_RS26730 (NY669_26730) | 24487..27396 | + | 2910 | WP_259435411.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NY669_RS26735 (NY669_26735) | 27583..27855 | + | 273 | WP_259435412.1 | hypothetical protein | - |
| NY669_RS26740 (NY669_26740) | 27946..28593 | + | 648 | WP_259435413.1 | SOS response-associated peptidase | - |
| NY669_RS26745 (NY669_26745) | 28959..29135 | + | 177 | WP_259435414.1 | hypothetical protein | - |
| NY669_RS26750 (NY669_26750) | 29144..29329 | + | 186 | WP_259435415.1 | hypothetical protein | - |
| NY669_RS26755 (NY669_26755) | 29349..29567 | + | 219 | WP_259435416.1 | hypothetical protein | - |
| NY669_RS26760 (NY669_26760) | 29586..29801 | + | 216 | WP_259435417.1 | hypothetical protein | - |
| NY669_RS26765 (NY669_26765) | 29810..30058 | + | 249 | WP_259435418.1 | hypothetical protein | - |
| NY669_RS26770 (NY669_26770) | 30176..30469 | + | 294 | WP_259435419.1 | hypothetical protein | - |
| NY669_RS26775 (NY669_26775) | 30942..31265 | + | 324 | WP_259435420.1 | hypothetical protein | - |
| NY669_RS26780 (NY669_26780) | 31397..31795 | + | 399 | WP_259435421.1 | hypothetical protein | - |
| NY669_RS26785 (NY669_26785) | 31795..32238 | + | 444 | WP_259435422.1 | hypothetical protein | - |
| NY669_RS26790 (NY669_26790) | 32435..33079 | + | 645 | WP_259435423.1 | hypothetical protein | - |
| NY669_RS26795 (NY669_26795) | 33093..33287 | + | 195 | WP_259435424.1 | hypothetical protein | - |
| NY669_RS26800 (NY669_26800) | 33534..33932 | + | 399 | WP_259435425.1 | hypothetical protein | - |
| NY669_RS26805 (NY669_26805) | 33963..34250 | + | 288 | WP_259435426.1 | hypothetical protein | - |
| NY669_RS26810 (NY669_26810) | 34306..34623 | + | 318 | WP_259435427.1 | hypothetical protein | - |
| NY669_RS26815 (NY669_26815) | 34804..35016 | + | 213 | WP_259435428.1 | hypothetical protein | - |
| NY669_RS26820 (NY669_26820) | 35534..35728 | + | 195 | WP_259435429.1 | hypothetical protein | - |
| NY669_RS26825 (NY669_26825) | 35722..36099 | - | 378 | WP_259435430.1 | hypothetical protein | - |
| NY669_RS26830 (NY669_26830) | 36292..36933 | - | 642 | WP_259435431.1 | thiol-disulfide isomerase | - |
| NY669_RS26835 (NY669_26835) | 36930..38441 | - | 1512 | WP_259435432.1 | hypothetical protein | VF |
| NY669_RS26840 (NY669_26840) | 38611..39852 | + | 1242 | WP_259435433.1 | hypothetical protein | - |
| NY669_RS26845 (NY669_26845) | 39849..40352 | + | 504 | WP_259435434.1 | hypothetical protein | - |
| NY669_RS26850 (NY669_26850) | 40349..42505 | + | 2157 | WP_259435435.1 | hypothetical protein | - |
| NY669_RS26855 (NY669_26855) | 42502..43908 | + | 1407 | WP_259435436.1 | conjugal transfer protein TraN | - |
| NY669_RS26860 (NY669_26860) | 43920..44285 | + | 366 | WP_259435437.1 | hypothetical protein | - |
| NY669_RS26865 (NY669_26865) | 44339..44479 | + | 141 | WP_259435438.1 | hypothetical protein | - |
| NY669_RS26870 (NY669_26870) | 44479..45702 | + | 1224 | WP_259435439.1 | DUF1173 domain-containing protein | - |
| NY669_RS26875 (NY669_26875) | 45702..46130 | + | 429 | WP_259435348.1 | hypothetical protein | - |
| NY669_RS26880 (NY669_26880) | 46127..49498 | - | 3372 | WP_259435349.1 | hypothetical protein | Relaxase |
| NY669_RS26885 (NY669_26885) | 49495..49986 | - | 492 | WP_259435350.1 | hypothetical protein | - |
| NY669_RS26890 (NY669_26890) | 49989..52022 | - | 2034 | WP_259435351.1 | type IV secretion system DNA-binding domain-containing protein | - |
| NY669_RS26895 (NY669_26895) | 52035..52400 | - | 366 | WP_259435352.1 | hypothetical protein | - |
| NY669_RS26900 (NY669_26900) | 52384..52788 | - | 405 | WP_259435353.1 | hypothetical protein | - |
| NY669_RS26905 (NY669_26905) | 53160..53420 | + | 261 | WP_259435354.1 | hypothetical protein | - |
| NY669_RS26910 (NY669_26910) | 54524..55408 | - | 885 | WP_259435355.1 | zincin-like metallopeptidase domain-containing protein | - |
| NY669_RS26915 (NY669_26915) | 55405..55947 | - | 543 | WP_259435356.1 | hypothetical protein | - |
| NY669_RS26920 (NY669_26920) | 56630..56830 | - | 201 | WP_259435357.1 | hypothetical protein | - |
| NY669_RS26925 (NY669_26925) | 56840..57385 | - | 546 | WP_259435358.1 | hypothetical protein | - |
| NY669_RS26930 (NY669_26930) | 58313..59110 | - | 798 | WP_259435359.1 | N-6 DNA methylase | - |
| NY669_RS26935 (NY669_26935) | 59123..59374 | - | 252 | WP_259435440.1 | plasmid related protein | - |
| NY669_RS26940 (NY669_26940) | 59823..60047 | - | 225 | WP_259435360.1 | hypothetical protein | - |
| NY669_RS26945 (NY669_26945) | 60044..60496 | - | 453 | WP_259435361.1 | single-stranded DNA-binding protein | - |
| NY669_RS26950 (NY669_26950) | 61058..61222 | - | 165 | WP_259435362.1 | hypothetical protein | - |
| NY669_RS26955 (NY669_26955) | 62649..63050 | - | 402 | WP_259435363.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin Detail |
| NY669_RS26960 (NY669_26960) | 63053..63349 | - | 297 | WP_259435364.1 | type II toxin-antitoxin system MqsR family toxin | Toxin Detail |
| NY669_RS26965 (NY669_26965) | 63468..65384 | - | 1917 | WP_259435365.1 | hypothetical protein | - |
| NY669_RS26970 (NY669_26970) | 66114..66503 | + | 390 | WP_259435366.1 | hypothetical protein | - |
| NY669_RS26975 (NY669_26975) | 66894..67082 | + | 189 | WP_259435367.1 | hypothetical protein | - |
| NY669_RS26980 (NY669_26980) | 67163..67360 | + | 198 | WP_259435368.1 | hypothetical protein | - |
| NY669_RS26985 (NY669_26985) | 67420..67578 | + | 159 | WP_259435369.1 | hypothetical protein | - |
| NY669_RS26990 (NY669_26990) | 67645..67998 | + | 354 | WP_259435370.1 | hypothetical protein | - |
| NY669_RS26995 (NY669_26995) | 68062..68271 | + | 210 | WP_259435371.1 | hypothetical protein | - |
| NY669_RS27000 (NY669_27000) | 68293..68718 | + | 426 | WP_259435372.1 | hypothetical protein | - |
| NY669_RS27005 (NY669_27005) | 68719..69009 | + | 291 | WP_259435373.1 | hypothetical protein | - |
| NY669_RS27010 (NY669_27010) | 69021..69305 | + | 285 | WP_259435374.1 | hypothetical protein | - |
| NY669_RS27015 (NY669_27015) | 69298..69801 | + | 504 | WP_259435375.1 | hypothetical protein | - |
| NY669_RS27020 (NY669_27020) | 70210..70518 | + | 309 | WP_259435376.1 | hypothetical protein | - |
| NY669_RS27025 (NY669_27025) | 70636..70965 | + | 330 | WP_259435377.1 | FxLYD domain-containing protein | - |
| NY669_RS27030 (NY669_27030) | 71004..72995 | - | 1992 | WP_259435378.1 | site-specific integrase | - |
| NY669_RS27035 (NY669_27035) | 73476..74132 | + | 657 | WP_259435379.1 | DNA-binding protein | - |
| NY669_RS27040 (NY669_27040) | 74279..74953 | + | 675 | WP_259435380.1 | hypothetical protein | - |
| NY669_RS27045 (NY669_27045) | 75362..77761 | + | 2400 | WP_011798711.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| NY669_RS27050 (NY669_27050) | 78117..79436 | + | 1320 | WP_259435381.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| NY669_RS27055 (NY669_27055) | 79447..80229 | - | 783 | Protein_94 | DUF1566 domain-containing protein | - |
| NY669_RS27060 (NY669_27060) | 80327..80830 | - | 504 | WP_144735869.1 | hypothetical protein | - |
| NY669_RS27065 (NY669_27065) | 80916..81185 | - | 270 | WP_144735867.1 | hypothetical protein | - |
| NY669_RS27070 (NY669_27070) | 81364..81570 | + | 207 | WP_020205952.1 | hypothetical protein | - |
| NY669_RS27075 (NY669_27075) | 81753..83333 | + | 1581 | WP_011798713.1 | IS91 family transposase ISPps1 | Transposase |
| NY669_RS27080 (NY669_27080) | 83586..84380 | + | 795 | WP_008328897.1 | hydratase | - |
| NY669_RS27085 (NY669_27085) | 84688..84951 | - | 264 | Protein_100 | IS1595 family transposase ISAcde1 | Transposase |
| NY669_RS27090 (NY669_27090) | 85096..88011 | + | 2916 | WP_003049965.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| NY669_RS27095 (NY669_27095) | 88124..88522 | - | 399 | WP_259435382.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|