MGE detailed information
MGE type: Prophage MGE length: 55949 bp
Accession: NZ_CP103860 Location: 900793..956741 Organism: Staphylococcus aureus strain R3-8 Replicon: chromosome
Accession: NZ_CP103860 Location: 900793..956741 Organism: Staphylococcus aureus strain R3-8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYR13_RS04435 (895951) | 895951..896031 | + | 81 | WP_000046022.1 | delta-hemolysin | - |
| NYR13_RS04440 (896628) | 896628..897413 | - | 786 | WP_000867960.1 | carbon-nitrogen family hydrolase | - |
| NYR13_RS04445 (897774) | 897774..898400 | - | 627 | WP_000522384.1 | nitroreductase family protein | - |
| NYR13_RS04450 (898597) | 898597..899850 | + | 1254 | WP_000120307.1 | SdrH family protein | - |
| NYR13_RS04455 (899875) | 899875..900618 | - | 744 | WP_251354286.1 | CPBP family intramembrane metalloprotease MroQ | - |
| NYR13_RS04460 (900793) | 900793..901077 | + | 285 | WP_000917289.1 | co-chaperone GroES | - |
| NYR13_RS04465 (901153) | 901153..902769 | + | 1617 | WP_000240645.1 | 60 kDa chaperonin | VF |
| NYR13_RS04470 (902864) | 902864..903410 | - | 547 | Protein_877 | site-specific integrase | - |
| NYR13_RS04475 (903471) | 903471..903683 | + | 213 | WP_000128898.1 | hypothetical protein | - |
| NYR13_RS04480 (903680) | 903680..904270 | + | 591 | WP_001293058.1 | terminase small subunit | - |
| NYR13_RS04485 (904588) | 904588..905024 | + | 437 | Protein_880 | hypothetical protein | - |
| NYR13_RS04490 (905130) | 905130..905573 | + | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| NYR13_RS04495 (906426) | 906426..907733 | - | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| NYR13_RS04500 (907894) | 907894..908805 | + | 912 | WP_000825510.1 | Iron(3+)-hydroxamate-binding protein FhuD | VF |
| NYR13_RS04505 (908867) | 908867..909712 | + | 846 | WP_000812010.1 | class I SAM-dependent methyltransferase | - |
| NYR13_RS04510 (910084) | 910084..911307 | - | 1224 | WP_000206639.1 | ArgE/DapE family deacylase | - |
| NYR13_RS04515 (911742) | 911742..912797 | + | 1056 | WP_000791407.1 | putative leukocidin-like protein 2 | VF |
| NYR13_RS04520 (912819) | 912819..913835 | + | 1017 | WP_000595324.1 | putative leukocidin-like protein 1 | VF |
| NYR13_RS04525 (914073) | 914073..914900 | - | 828 | Protein_888 | Phospholipase C | VF |
| NYR13_RS04530 (914954) | 914954..915991 | - | 1038 | WP_000857199.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NYR13_RS04535 (916182) | 916182..916919 | - | 738 | WP_001293556.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NYR13_RS04540 (916973) | 916973..917155 | - | 183 | WP_000705246.1 | hypothetical protein | - |
| NYR13_RS04545 (917359) | 917359..917700 | - | 342 | WP_000591749.1 | hypothetical protein | - |
| NYR13_RS04550 (917706) | 917706..918638 | - | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| NYR13_RS04555 (918654) | 918654..919367 | - | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| NYR13_RS04560 (919330) | 919330..919503 | + | 174 | WP_001801500.1 | hypothetical protein | - |
| NYR13_RS04565 (919500) | 919500..919763 | + | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| NYR13_RS04570 (919779) | 919779..919994 | + | 216 | WP_001025404.1 | DUF2829 domain-containing protein | - |
| NYR13_RS04575 (919983) | 919983..920312 | - | 330 | WP_000180411.1 | hypothetical protein | - |
| NYR13_RS04580 (920363) | 920363..921115 | + | 753 | WP_001148642.1 | phage antirepressor KilAC domain-containing protein | - |
| NYR13_RS04585 (921131) | 921131..921307 | + | 177 | WP_001001356.1 | hypothetical protein | - |
| NYR13_RS04590 (921304) | 921304..921534 | - | 231 | WP_000549548.1 | hypothetical protein | - |
| NYR13_RS04595 (921593) | 921593..921913 | + | 321 | WP_001120199.1 | DUF771 domain-containing protein | - |
| NYR13_RS04600 (921910) | 921910..922071 | + | 162 | WP_001285960.1 | DUF1270 domain-containing protein | - |
| NYR13_RS04605 (922166) | 922166..922426 | + | 261 | WP_001549178.1 | DUF2482 family protein | - |
| NYR13_RS04610 (922466) | 922466..922726 | + | 261 | WP_000291513.1 | DUF1108 family protein | - |
| NYR13_RS04615 (922735) | 922735..922998 | + | 264 | WP_001205732.1 | hypothetical protein | - |
| NYR13_RS04620 (923007) | 923007..924950 | + | 1944 | WP_000700561.1 | AAA family ATPase | - |
| NYR13_RS04625 (924952) | 924952..925872 | + | 921 | WP_000138475.1 | recombinase RecT | - |
| NYR13_RS04630 (925953) | 925953..926570 | + | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| NYR13_RS04635 (926571) | 926571..927041 | + | 471 | WP_000934753.1 | single-stranded DNA-binding protein | - |
| NYR13_RS04640 (927071) | 927071..927964 | + | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| NYR13_RS04645 (927971) | 927971..928189 | + | 219 | WP_000338530.1 | hypothetical protein | - |
| NYR13_RS04650 (928198) | 928198..928602 | + | 405 | WP_000401977.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NYR13_RS04655 (928615) | 928615..928983 | + | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| NYR13_RS04660 (928987) | 928987..929229 | + | 243 | WP_000131383.1 | phi PVL orf 51-like protein | - |
| NYR13_RS04665 (929238) | 929238..929609 | + | 372 | WP_001549172.1 | hypothetical protein | - |
| NYR13_RS04670 (929602) | 929602..929838 | + | 237 | WP_001065101.1 | DUF1024 family protein | - |
| NYR13_RS04675 (929828) | 929828..930070 | + | 243 | WP_000700108.1 | hypothetical protein | - |
| NYR13_RS04680 (930063) | 930063..930596 | + | 534 | WP_000181819.1 | dUTP pyrophosphatase | - |
| NYR13_RS04685 (930633) | 930633..930878 | + | 246 | WP_001282074.1 | hypothetical protein | - |
| NYR13_RS04690 (930875) | 930875..931081 | + | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| NYR13_RS04695 (931078) | 931078..931464 | + | 387 | WP_000592207.1 | hypothetical protein | - |
| NYR13_RS04700 (931461) | 931461..931610 | + | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| NYR13_RS04705 (931610) | 931610..931810 | + | 201 | WP_000265043.1 | DUF1514 family protein | - |
| NYR13_RS04710 (931838) | 931838..932254 | + | 417 | WP_000590122.1 | hypothetical protein | - |
| NYR13_RS04715 (932486) | 932486..932785 | + | 300 | WP_000988336.1 | HNH endonuclease | - |
| NYR13_RS04720 (932915) | 932915..933259 | + | 345 | WP_000402904.1 | hypothetical protein | - |
| NYR13_RS04725 (933256) | 933256..934917 | + | 1662 | WP_000625088.1 | terminase large subunit | - |
| NYR13_RS04730 (934933) | 934933..936120 | + | 1188 | WP_000025274.1 | phage portal protein | - |
| NYR13_RS04735 (936104) | 936104..936841 | + | 738 | WP_000642728.1 | Clp protease ClpP | - |
| NYR13_RS04740 (936865) | 936865..938010 | + | 1146 | WP_000154559.1 | phage major capsid protein | - |
| NYR13_RS04745 (938030) | 938030..938314 | + | 285 | WP_000238236.1 | hypothetical protein | - |
| NYR13_RS04750 (938304) | 938304..938588 | + | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| NYR13_RS04755 (938572) | 938572..938934 | + | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| NYR13_RS04760 (938931) | 938931..939335 | + | 405 | WP_000114229.1 | HK97 gp10 family phage protein | - |
| NYR13_RS04765 (939332) | 939332..939736 | + | 405 | WP_000565500.1 | hypothetical protein | - |
| NYR13_RS04770 (939740) | 939740..940384 | + | 645 | WP_000260578.1 | phage tail protein | - |
| NYR13_RS04775 (940426) | 940426..940650 | + | 225 | WP_076035566.1 | Ig-like domain-containing protein | - |
| NYR13_RS04780 (940700) | 940700..941050 | + | 351 | WP_001096354.1 | hypothetical protein | - |
| NYR13_RS04785 (941101) | 941101..941238 | + | 138 | WP_001549167.1 | hypothetical protein | - |
| NYR13_RS04790 (941295) | 941295..945824 | + | 4530 | WP_001551779.1 | phage tail tape measure protein | - |
| NYR13_RS04795 (945821) | 945821..947305 | + | 1485 | WP_000567394.1 | phage tail family protein | - |
| NYR13_RS04800 (947321) | 947321..951106 | + | 3786 | WP_000582165.1 | phage tail spike protein | - |
| NYR13_RS04805 (951096) | 951096..951248 | + | 153 | WP_001153681.1 | hypothetical protein | - |
| NYR13_RS04810 (951295) | 951295..951582 | + | 288 | WP_001040261.1 | hypothetical protein | - |
| NYR13_RS04815 (951640) | 951640..951936 | + | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| NYR13_RS04820 (952086) | 952086..952262 | + | 177 | WP_011447039.1 | type I toxin-antitoxin system toxin PepG1 | Toxin Detail |
| - (952254) | 952254..952393 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (952254) | 952254..952393 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (952254) | 952254..952393 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (952254) | 952254..952393 | - | 140 | NuclAT_0 | - | Antitoxin Detail |
| NYR13_RS04825 (952315) | 952315..952422 | - | 108 | WP_001791821.1 | hypothetical protein | - |
| NYR13_RS04830 (952474) | 952474..952728 | + | 255 | WP_000611512.1 | phage holin | - |
| NYR13_RS04835 (952740) | 952740..953495 | + | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| NYR13_RS04840 (953686) | 953686..954177 | + | 492 | WP_000919350.1 | Staphylokinase | VF |
| NYR13_RS04845 (954827) | 954827..955162 | + | 336 | Protein_952 | SH3 domain-containing protein | - |
| NYR13_RS04850 (955257) | 955257..955706 | - | 450 | WP_251354221.1 | Chemotaxis inhibitory protein | VF |
| NYR13_RS04855 (956391) | 956391..956741 | + | 351 | WP_000702263.1 | Staphylococcal complement inhibitor | VF |
| NYR13_RS04860 (956794) | 956794..957054 | - | 261 | WP_001791826.1 | hypothetical protein | - |
| NYR13_RS04865 (957365) | 957365..957544 | - | 180 | WP_000669789.1 | hypothetical protein | - |
| NYR13_RS04870 (957916) | 957916..958113 | - | 198 | WP_000239610.1 | phospholipase | - |
| NYR13_RS04875 (958502) | 958502..960557 | + | 2056 | Protein_958 | extracellular adherence protein Eap/Map | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|