MGE detailed information
MGE type: Prophage MGE length: 43619 bp
Accession: NZ_CP103860 Location: 2178227..2221845 Organism: Staphylococcus aureus strain R3-8 Replicon: chromosome
Accession: NZ_CP103860 Location: 2178227..2221845 Organism: Staphylococcus aureus strain R3-8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYR13_RS11085 (2173421) | 2173421..2174728 | - | 1308 | WP_000205572.1 | Fe-S cluster assembly protein SufD | - |
| NYR13_RS11090 (2174826) | 2174826..2175587 | - | 762 | WP_000168845.1 | Fe-S cluster assembly ATPase SufC | - |
| NYR13_RS11095 (2175915) | 2175915..2176766 | + | 852 | WP_001183858.1 | DUF368 domain-containing protein | - |
| NYR13_RS11100 (2176999) | 2176999..2177193 | - | 195 | WP_000752917.1 | CsbD family protein | - |
| NYR13_RS11105 (2178227) | 2178227..2178781 | + | 555 | WP_001035618.1 | DUF4888 domain-containing protein | - |
| NYR13_RS11110 (2179016) | 2179016..2179984 | - | 969 | WP_000801979.1 | Abi family protein | - |
| NYR13_RS11115 (2180131) | 2180131..2180214 | - | 84 | Protein_2162 | terminase small subunit | - |
| NYR13_RS11120 (2180261) | 2180261..2180413 | - | 153 | Protein_2163 | terminase small subunit | - |
| NYR13_RS11125 (2180413) | 2180413..2180904 | - | 492 | WP_000253084.1 | hypothetical protein | - |
| NYR13_RS11130 (2181088) | 2181088..2182146 | - | 1059 | WP_000657538.1 | phage capsid protein | - |
| NYR13_RS11135 (2182133) | 2182133..2182339 | - | 207 | WP_000884055.1 | hypothetical protein | - |
| NYR13_RS11140 (2182564) | 2182564..2182908 | - | 345 | WP_001081424.1 | hypothetical protein | - |
| NYR13_RS11145 (2183579) | 2183579..2185951 | - | 2373 | WP_000985235.1 | phage/plasmid primase, P4 family | - |
| NYR13_RS11150 (2186043) | 2186043..2186291 | - | 249 | WP_001103959.1 | DUF1474 family protein | - |
| NYR13_RS11155 (2186292) | 2186292..2186675 | - | 384 | WP_000403840.1 | hypothetical protein | - |
| NYR13_RS11160 (2186677) | 2186677..2186880 | - | 204 | WP_001231376.1 | hypothetical protein | - |
| NYR13_RS11165 (2186847) | 2186847..2187020 | - | 174 | WP_000784892.1 | hypothetical protein | - |
| NYR13_RS11170 (2187032) | 2187032..2187304 | - | 273 | WP_000091732.1 | helix-turn-helix domain-containing protein | - |
| NYR13_RS11175 (2187297) | 2187297..2187560 | - | 264 | WP_000243849.1 | helix-turn-helix transcriptional regulator | - |
| NYR13_RS11180 (2187753) | 2187753..2188085 | + | 333 | WP_001260004.1 | helix-turn-helix transcriptional regulator | - |
| NYR13_RS11185 (2188097) | 2188097..2188555 | + | 459 | WP_000281658.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NYR13_RS11190 (2188572) | 2188572..2189300 | + | 729 | WP_001033321.1 | hypothetical protein | VF |
| NYR13_RS11195 (2189324) | 2189324..2190052 | + | 729 | WP_000734020.1 | hypothetical protein | VF |
| NYR13_RS11200 (2190140) | 2190140..2191360 | + | 1221 | WP_000266158.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| NYR13_RS11205 (2191503) | 2191503..2192324 | - | 822 | WP_000732326.1 | Methionine-binding lipoprotein MetQ | VF |
| NYR13_RS11210 (2192342) | 2192342..2193037 | - | 696 | WP_000520233.1 | methionine ABC transporter permease | - |
| NYR13_RS11215 (2193030) | 2193030..2194055 | - | 1026 | WP_000571218.1 | Methionine import ATP-binding protein MetN 2 | VF |
| NYR13_RS11220 (2194305) | 2194305..2194601 | - | 297 | WP_001065801.1 | thioredoxin family protein | - |
| NYR13_RS11225 (2194594) | 2194594..2194980 | - | 387 | WP_001018962.1 | toprim domain-containing protein | - |
| NYR13_RS11230 (2195722) | 2195722..2196600 | - | 879 | WP_000932219.1 | YwqG family protein | - |
| NYR13_RS11235 (2196779) | 2196779..2197159 | - | 381 | WP_000290485.1 | glycine cleavage system protein GcvH | - |
| NYR13_RS11240 (2197317) | 2197317..2197673 | - | 357 | WP_000589549.1 | arsenate reductase family protein | - |
| NYR13_RS11245 (2197817) | 2197817..2198137 | + | 321 | WP_001190695.1 | thioredoxin family protein | - |
| NYR13_RS11250 (2198287) | 2198287..2198826 | - | 540 | WP_000422909.1 | nitroreductase | - |
| NYR13_RS11255 (2198909) | 2198909..2199625 | - | 717 | WP_000150017.1 | type I 3-dehydroquinate dehydratase | - |
| NYR13_RS11260 (2199773) | 2199773..2200195 | + | 423 | WP_000974460.1 | organic hydroperoxide resistance protein | - |
| NYR13_RS11265 (2200594) | 2200594..2201088 | + | 495 | WP_000569884.1 | GNAT family N-acetyltransferase | - |
| NYR13_RS11270 (2201243) | 2201243..2201860 | + | 618 | WP_000255561.1 | LysE/ArgO family amino acid transporter | - |
| NYR13_RS11275 (2201933) | 2201933..2202514 | - | 582 | WP_001140686.1 | histidine phosphatase family protein | - |
| NYR13_RS11280 (2202739) | 2202739..2202975 | + | 237 | WP_000368687.1 | hypothetical protein | - |
| NYR13_RS11285 (2202972) | 2202972..2203175 | - | 204 | WP_000145163.1 | sterile alpha motif-like domain-containing protein | - |
| NYR13_RS11290 (2203516) | 2203516..2203776 | + | 261 | WP_001059690.1 | hypothetical protein | Antitoxin Detail |
| NYR13_RS11295 (2203805) | 2203805..2203993 | + | 189 | WP_000052078.1 | hypothetical protein | Toxin Detail |
| NYR13_RS11300 (2204181) | 2204181..2204750 | + | 570 | WP_001106654.1 | lipoprotein N-acylation protein LnsA | - |
| NYR13_RS11305 (2204838) | 2204838..2205122 | + | 285 | WP_001004395.1 | hypothetical protein | - |
| NYR13_RS11310 (2205184) | 2205184..2205402 | + | 219 | WP_000005886.1 | hypothetical protein | - |
| NYR13_RS11315 (2205898) | 2205898..2206098 | - | 201 | WP_001059082.1 | cold-shock protein | - |
| NYR13_RS11320 (2206455) | 2206455..2207141 | - | 687 | WP_001548082.1 | thermonuclease family protein | - |
| NYR13_RS11325 (2207482) | 2207482..2207952 | - | 471 | WP_000824472.1 | hypothetical protein | VF |
| NYR13_RS11330 (2208287) | 2208287..2209309 | - | 1023 | WP_000728056.1 | extracellular matrix protein-binding adhesin Emp | - |
| NYR13_RS11335 (2209660) | 2209660..2211186 | - | 1527 | WP_000791729.1 | Staphylocoagulase | VF |
| NYR13_RS11340 (2211407) | 2211407..2214208 | - | 2802 | WP_001056223.1 | Clumping factor A | VF |
| NYR13_RS11345 (2214471) | 2214471..2215001 | - | 531 | WP_001167175.1 | N-acetyltransferase | - |
| NYR13_RS11350 (2215140) | 2215140..2215661 | - | 522 | Protein_2209 | hypothetical protein | - |
| NYR13_RS11355 (2215669) | 2215669..2215824 | - | 156 | WP_001790158.1 | hypothetical protein | - |
| NYR13_RS11360 (2216260) | 2216260..2216988 | + | 729 | WP_000757406.1 | DUF5067 domain-containing protein | - |
| NYR13_RS11365 (2217180) | 2217180..2217326 | + | 147 | WP_001057759.1 | hypothetical protein | - |
| NYR13_RS11370 (2217342) | 2217342..2217665 | + | 324 | WP_001058299.1 | hypothetical protein | - |
| NYR13_RS11380 (2218987) | 2218987..2219451 | - | 465 | WP_001085185.1 | SsrA-binding protein SmpB | - |
| NYR13_RS11385 (2219473) | 2219473..2221845 | - | 2373 | WP_001050064.1 | ribonuclease R | - |
| NYR13_RS11390 (2221879) | 2221879..2222619 | - | 741 | WP_001165952.1 | carboxylesterase | - |
| NYR13_RS11395 (2222735) | 2222735..2222968 | - | 234 | WP_000556760.1 | preprotein translocase subunit SecG | - |
| NYR13_RS11400 (2223035) | 2223035..2223493 | - | 459 | WP_000785252.1 | hypothetical protein | - |
| NYR13_RS11405 (2223833) | 2223833..2225137 | - | 1305 | WP_001121760.1 | phosphopyruvate hydratase | - |
| NYR13_RS11410 (2225267) | 2225267..2226784 | - | 1518 | WP_001085505.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|