MGE detailed information
MGE type: Prophage MGE length: 70713 bp
Accession: NZ_CP103860 Location: 1080162..1150874 Organism: Staphylococcus aureus strain R3-8 Replicon: chromosome
Accession: NZ_CP103860 Location: 1080162..1150874 Organism: Staphylococcus aureus strain R3-8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYR13_RS05590 () | 1075631..1076134 | - | 504 | WP_000737976.1 | signal transduction protein TRAP | - |
| NYR13_RS05595 () | 1076297..1076407 | + | 111 | WP_001790154.1 | hypothetical protein | - |
| NYR13_RS05600 () | 1076397..1077434 | + | 1038 | WP_000233526.1 | uroporphyrinogen decarboxylase | - |
| NYR13_RS05605 () | 1077492..1078415 | + | 924 | WP_000162881.1 | ferrochelatase | - |
| NYR13_RS05610 () | 1078439..1079839 | + | 1401 | WP_000167538.1 | protoporphyrinogen oxidase | - |
| NYR13_RS05615 () | 1080162..1080716 | + | 555 | WP_000132890.1 | alpha/beta hydrolase | - |
| NYR13_RS05660 () | 1082504..1082712 | - | 209 | Protein_1076 | hypothetical protein | - |
| NYR13_RS05665 () | 1083173..1083960 | - | 788 | Protein_1077 | DUF1828 domain-containing protein | - |
| NYR13_RS05670 () | 1083973..1084512 | - | 540 | WP_000226886.1 | hypothetical protein | - |
| NYR13_RS05675 () | 1085325..1086245 | + | 921 | WP_000878802.1 | Leucotoxin LukEv | VF |
| NYR13_RS05680 () | 1086247..1087230 | + | 984 | WP_000782464.1 | Leucotoxin LukDv | VF |
| NYR13_RS05685 () | 1087472..1087615 | + | 144 | WP_000416759.1 | gallidermin/nisin family lantibiotic | - |
| NYR13_RS05690 () | 1088352..1088495 | + | 144 | WP_000416756.1 | gallidermin/nisin family lantibiotic | - |
| NYR13_RS05695 () | 1088560..1091553 | + | 2994 | WP_001092605.1 | lantibiotic dehydratase | - |
| NYR13_RS05700 () | 1091546..1092790 | + | 1245 | WP_000566596.1 | lanthionine synthetase C family protein | - |
| NYR13_RS05705 () | 1092806..1093324 | + | 519 | WP_000504439.1 | phosphopantothenate--cysteine ligase family flavoprotein | - |
| NYR13_RS05710 () | 1093334..1094707 | + | 1374 | WP_000691541.1 | S8 family serine peptidase | - |
| NYR13_RS05715 () | 1094730..1095422 | + | 693 | WP_001096791.1 | Bacitracin transport ATP-binding protein BcrA | VF |
| NYR13_RS05720 () | 1095419..1096180 | + | 762 | WP_000581552.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| NYR13_RS05725 () | 1096177..1096875 | + | 699 | WP_000586140.1 | hypothetical protein | - |
| NYR13_RS05730 () | 1097349..1097915 | - | 567 | WP_001092763.1 | DUF4888 domain-containing protein | - |
| NYR13_RS05735 () | 1098879..1099586 | + | 708 | WP_001039435.1 | Serine protease SplA | VF |
| NYR13_RS05740 () | 1099711..1100433 | + | 723 | WP_001039447.1 | Serine protease SplB | VF |
| NYR13_RS05745 () | 1100491..1101210 | + | 720 | WP_001038867.1 | Serine protease SplC | VF |
| NYR13_RS05750 () | 1101331..1102050 | + | 720 | WP_251354280.1 | Serine protease SplD | VF |
| NYR13_RS05755 () | 1102208..1102924 | + | 717 | WP_001038759.1 | Serine protease SplE | VF |
| NYR13_RS05760 () | 1103075..1103794 | + | 720 | WP_001038688.1 | Serine protease SplF | VF |
| NYR13_RS05765 () | 1103859..1103993 | + | 135 | WP_001791797.1 | hypothetical protein | - |
| NYR13_RS05770 () | 1104157..1105713 | + | 1557 | WP_000028659.1 | type I restriction-modification system subunit M | - |
| NYR13_RS05775 () | 1105706..1106905 | + | 1200 | WP_000072576.1 | restriction endonuclease subunit S | - |
| NYR13_RS05780 () | 1107755..1111867 | + | 4113 | WP_260595516.1 | SMEK domain-containing protein | - |
| NYR13_RS05785 () | 1112388..1112765 | + | 378 | WP_001037045.1 | DUF1433 domain-containing protein | - |
| NYR13_RS05790 () | 1112959..1113135 | + | 177 | Protein_1102 | transposase | - |
| NYR13_RS05795 () | 1113113..1113214 | - | 102 | WP_001791893.1 | hypothetical protein | - |
| - | 1113250..1113309 | + | 60 | - | - | Antitoxin Detail |
| NYR13_RS05800 () | 1113337..1113432 | - | 96 | WP_001801861.1 | type I toxin-antitoxin system Fst family toxin PepA1 | Toxin Detail |
| NYR13_RS05805 () | 1113635..1113778 | + | 144 | WP_001549059.1 | IS3 family transposase IS655 | Transposase |
| NYR13_RS05810 () | 1114382..1114765 | + | 384 | WP_000070811.1 | hypothetical protein | - |
| NYR13_RS05815 () | 1114776..1114952 | + | 177 | WP_000375476.1 | hypothetical protein | - |
| NYR13_RS05820 () | 1114954..1115139 | + | 186 | WP_000809857.1 | hypothetical protein | - |
| NYR13_RS05825 () | 1115253..1115894 | + | 642 | WP_000494956.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NYR13_RS05830 () | 1116112..1116663 | - | 552 | WP_000414205.1 | hypothetical protein | - |
| NYR13_RS05835 () | 1116761..1117105 | - | 345 | WP_000627551.1 | DUF3969 family protein | - |
| NYR13_RS05840 () | 1117146..1117772 | - | 627 | Protein_1112 | hypothetical protein | - |
| NYR13_RS05845 () | 1117848..1118843 | - | 996 | WP_000070653.1 | DUF4352 domain-containing protein | - |
| NYR13_RS05850 () | 1118924..1119574 | - | 651 | WP_001795535.1 | excalibur calcium-binding domain-containing protein | - |
| NYR13_RS05855 () | 1119877..1120332 | + | 456 | WP_011443643.1 | DUF4909 domain-containing protein | - |
| NYR13_RS05860 () | 1120491..1121969 | + | 1479 | WP_000348360.1 | o-succinylbenzoate--CoA ligase | - |
| NYR13_RS05865 () | 1121974..1122975 | + | 1002 | WP_000778523.1 | o-succinylbenzoate synthase | - |
| NYR13_RS05870 () | 1122972..1123229 | - | 258 | WP_000718107.1 | membrane protein insertion efficiency factor YidD | - |
| NYR13_RS05875 () | 1123295..1123768 | + | 474 | WP_000672014.1 | nucleoside triphosphatase YtkD | - |
| NYR13_RS05880 () | 1123773..1124519 | + | 747 | WP_002868962.1 | prolyl oligopeptidase family serine peptidase | - |
| NYR13_RS05885 () | 1124948..1125379 | + | 432 | WP_048518122.1 | IS200-IS605 family transposase ISSep3 | Transposase |
| NYR13_RS05890 () | 1125515..1127107 | - | 1593 | WP_000109906.1 | phosphoenolpyruvate carboxykinase (ATP) | - |
| NYR13_RS05895 () | 1127478..1128671 | + | 1194 | WP_000933822.1 | methionine adenosyltransferase | - |
| NYR13_RS05900 () | 1128796..1129704 | + | 909 | WP_000366154.1 | nuclease-related domain-containing protein | - |
| NYR13_RS05905 () | 1129916..1130749 | + | 834 | WP_000453320.1 | aldo/keto reductase | - |
| NYR13_RS05910 () | 1130812..1132436 | - | 1625 | Protein_1126 | IS1182 family transposase ISSau3 | Transposase |
| NYR13_RS05915 () | 1132832..1133185 | - | 354 | WP_000623471.1 | CrcB family protein | - |
| NYR13_RS05920 () | 1133182..1133547 | - | 366 | WP_001200541.1 | fluoride efflux transporter CrcB | - |
| NYR13_RS05925 () | 1133803..1134105 | - | 303 | WP_000091445.1 | hypothetical protein | - |
| NYR13_RS05930 () | 1134365..1135078 | + | 714 | WP_001096459.1 | transaldolase | - |
| NYR13_RS05935 () | 1135518..1136153 | - | 636 | WP_001168904.1 | CPBP family intramembrane metalloprotease SdpA | - |
| NYR13_RS05940 () | 1136449..1136892 | + | 444 | WP_001030465.1 | hypothetical protein | - |
| NYR13_RS05945 () | 1136879..1137322 | - | 444 | WP_001153742.1 | competence protein ComK | - |
| NYR13_RS05950 () | 1137435..1137905 | - | 471 | WP_000671052.1 | RNA polymerase sigma factor SigS | - |
| NYR13_RS05955 () | 1138104..1138328 | + | 225 | WP_000384171.1 | hypothetical protein | - |
| NYR13_RS05960 () | 1138604..1139458 | + | 855 | WP_001032833.1 | N-acetylglucosaminidase | - |
| NYR13_RS05965 () | 1139753..1140148 | - | 396 | WP_000163235.1 | arsenate reductase (thioredoxin) | - |
| NYR13_RS05970 () | 1140166..1141458 | - | 1293 | WP_000989121.1 | arsenite efflux transporter membrane subunit ArsB | - |
| NYR13_RS05975 () | 1141458..1141772 | - | 315 | WP_000221179.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| NYR13_RS05980 () | 1142295..1143797 | + | 1503 | WP_001261677.1 | FAD/NAD(P)-binding protein | - |
| NYR13_RS05985 () | 1144278..1145321 | + | 1044 | WP_000077344.1 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD | - |
| NYR13_RS05990 () | 1145328..1145960 | + | 633 | WP_000493892.1 | riboflavin synthase | - |
| NYR13_RS05995 () | 1145971..1147152 | + | 1182 | WP_001159022.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| NYR13_RS06000 () | 1147165..1147629 | + | 465 | WP_001008551.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| NYR13_RS06005 () | 1147751..1148752 | - | 1002 | WP_001196354.1 | proline dehydrogenase | - |
| NYR13_RS06010 () | 1148864..1148983 | + | 120 | WP_001790712.1 | hypothetical protein | - |
| NYR13_RS06015 () | 1148986..1149813 | + | 828 | WP_000266096.1 | alpha/beta hydrolase | - |
| NYR13_RS06020 () | 1150160..1150823 | + | 664 | Protein_1148 | transposase | - |
| NYR13_RS06025 () | 1151394..1151795 | + | 402 | WP_000757543.1 | MarR family transcriptional regulator | - |
| NYR13_RS06030 () | 1151915..1152478 | - | 564 | WP_000764419.1 | class I SAM-dependent methyltransferase | - |
| NYR13_RS06035 () | 1152475..1153428 | - | 954 | WP_000526539.1 | TIGR01212 family radical SAM protein | - |
| NYR13_RS06040 () | 1153538..1154719 | + | 1182 | WP_001025061.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|