MGE detailed information
MGE type: Conjugative plasmid MGE length: 85991 bp
Accession: NZ_CP103772 Location: 1..85991 Organism: Salmonella enterica strain S1905 Replicon: plasmid pS1905_1
Accession: NZ_CP103772 Location: 1..85991 Organism: Salmonella enterica strain S1905 Replicon: plasmid pS1905_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYS49_RS24085 (1) | 1..1032 | + | 1032 | WP_024176529.1 | plasmid replication initiator RepA | - |
| NYS49_RS24090 (2102) | 2102..2611 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| NYS49_RS24095 (2667) | 2667..3269 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| NYS49_RS24100 (3824) | 3824..5086 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| NYS49_RS24105 (5342) | 5342..6217 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| NYS49_RS24110 (6264) | 6264..6608 | - | 345 | Protein_5 | WbuC family cupin fold metalloprotein | - |
| NYS49_RS24115 (6551) | 6551..7945 | + | 1395 | WP_023150520.1 | protein YagA | - |
| NYS49_RS24120 (8460) | 8460..8762 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| NYS49_RS24125 (8759) | 8759..9385 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| NYS49_RS24130 (9589) | 9589..10860 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| NYS49_RS24135 (10860) | 10860..11297 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NYS49_RS24140 (11294) | 11294..11542 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| NYS49_RS24145 (11960) | 11960..12862 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| NYS49_RS24150 (12866) | 12866..12952 | + | 87 | Protein_13 | hypothetical protein | - |
| NYS49_RS24155 (12957) | 12957..13292 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| NYS49_RS24160 (13630) | 13630..14610 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| NYS49_RS24165 (14613) | 14613..15035 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| NYS49_RS24170 (15039) | 15039..15350 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| NYS49_RS24175 (15426) | 15426..16109 | + | 684 | WP_000086127.1 | DNA methylase | - |
| NYS49_RS24180 (16110) | 16110..16331 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| NYS49_RS24185 (16261) | 16261..16779 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| NYS49_RS24190 (16824) | 16824..17594 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| NYS49_RS24195 (18007) | 18007..18432 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| NYS49_RS24200 (18479) | 18479..18901 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| NYS49_RS24205 (18898) | 18898..19089 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| NYS49_RS24210 (19242) | 19242..19490 | + | 249 | WP_168212312.1 | hypothetical protein | - |
| NYS49_RS24215 (19874) | 19874..20401 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| NYS49_RS24220 (20459) | 20459..20692 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| NYS49_RS24225 (20751) | 20751..22709 | + | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| NYS49_RS24230 (22762) | 22762..23196 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| NYS49_RS24235 (23193) | 23193..23912 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| NYS49_RS24240 (23909) | 23909..24505 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| NYS49_RS24245 (24967) | 24967..25467 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| NYS49_RS24250 (26196) | 26196..26630 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| NYS49_RS24255 (26724) | 26724..26990 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| NYS49_RS24260 (27167) | 27167..27556 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| NYS49_RS24265 (27553) | 27553..28455 | + | 903 | WP_023150544.1 | Recombination-promoting nuclease RpnA | VF |
| NYS49_RS24270 (28517) | 28517..28723 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| NYS49_RS24275 (28754) | 28754..29005 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| NYS49_RS24280 (29585) | 29585..30433 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| NYS49_RS24285 (30519) | 30519..30854 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| NYS49_RS24290 (31088) | 31088..31420 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| NYS49_RS24295 (31431) | 31431..34130 | + | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| NYS49_RS24300 (34167) | 34167..36458 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| NYS49_RS24305 (36451) | 36451..37521 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| NYS49_RS24310 (37540) | 37540..38748 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (38928) | 38928..38985 | - | 58 | NuclAT_1 | - | - |
| - (38928) | 38928..38985 | - | 58 | NuclAT_1 | - | - |
| - (38928) | 38928..38985 | - | 58 | NuclAT_1 | - | - |
| - (38928) | 38928..38985 | - | 58 | NuclAT_1 | - | - |
| NYS49_RS24315 (39055) | 39055..40140 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (40349) | 40349..40409 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40349) | 40349..40409 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40349) | 40349..40409 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (40349) | 40349..40409 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| NYS49_RS24320 (40461) | 40461..40613 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| NYS49_RS24325 (40685) | 40685..40936 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| NYS49_RS24330 (41236) | 41236..41532 | + | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| NYS49_RS24335 (41597) | 41597..41773 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| NYS49_RS24340 (42165) | 42165..42374 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| NYS49_RS24345 (42446) | 42446..43108 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NYS49_RS24350 (43179) | 43179..45347 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| NYS49_RS24355 (45444) | 45444..46028 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| NYS49_RS24360 (46057) | 46057..47259 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| NYS49_RS24365 (47226) | 47226..47840 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| NYS49_RS24370 (47840) | 47840..50884 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| NYS49_RS24375 (50974) | 50974..51774 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| NYS49_RS24380 (51758) | 51758..51946 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| NYS49_RS24385 (52010) | 52010..52414 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| NYS49_RS24390 (52465) | 52465..52992 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NYS49_RS24395 (52992) | 52992..53696 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| NYS49_RS24400 (53696) | 53696..54985 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| NYS49_RS24405 (54988) | 54988..55971 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| NYS49_RS24410 (55982) | 55982..56674 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| NYS49_RS24415 (56671) | 56671..57018 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NYS49_RS24420 (57036) | 57036..60803 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| NYS49_RS24425 (60893) | 60893..61444 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| NYS49_RS24430 (61459) | 61459..61749 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| NYS49_RS24435 (61746) | 61746..62894 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| NYS49_RS24440 (62891) | 62891..63709 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| NYS49_RS24445 (63706) | 63706..64164 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| NYS49_RS24450 (64558) | 64558..65142 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| NYS49_RS24455 (65202) | 65202..66404 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| NYS49_RS24460 (66490) | 66490..67314 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| NYS49_RS24465 (67465) | 67465..68619 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| NYS49_RS24470 (68618) | 68618..68971 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| NYS49_RS24475 (69346) | 69346..69459 | - | 114 | Protein_78 | prepilin | - |
| NYS49_RS24480 (69820) | 69820..70968 | - | 1149 | WP_259381968.1 | hypothetical protein | VF |
| NYS49_RS24485 (70968) | 70968..71624 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| NYS49_RS24490 (71609) | 71609..72169 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| NYS49_RS24495 (72179) | 72179..72793 | - | 615 | WP_001542527.1 | hypothetical protein | VF |
| NYS49_RS24500 (72811) | 72811..73908 | - | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| NYS49_RS24505 (73921) | 73921..75474 | - | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| NYS49_RS24510 (75485) | 75485..75937 | - | 453 | WP_012783945.1 | hypothetical protein | VF |
| NYS49_RS24515 (75924) | 75924..77219 | - | 1296 | WP_012783946.1 | type 4b pilus protein PilO2 | - |
| NYS49_RS24520 (77212) | 77212..78894 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| NYS49_RS24525 (78908) | 78908..79345 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| NYS49_RS24530 (79345) | 79345..80412 | - | 1068 | WP_012783947.1 | hypothetical protein | VF |
| NYS49_RS24535 (81036) | 81036..81332 | - | 297 | WP_000494780.1 | hypothetical protein | - |
| NYS49_RS24540 (81499) | 81499..81753 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| NYS49_RS24545 (81915) | 81915..82466 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| NYS49_RS24550 (82639) | 82639..83322 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| NYS49_RS24555 (83576) | 83576..84109 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| NYS49_RS24560 (84551) | 84551..84838 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| NYS49_RS24565 (84876) | 84876..85034 | - | 159 | Protein_96 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|