MGE detailed information
MGE type: Prophage MGE length: 88588 bp
Accession: NZ_CP103739 Location: 1082397..1170984 Organism: Escherichia coli strain 3359 Replicon: chromosome
Accession: NZ_CP103739 Location: 1082397..1170984 Organism: Escherichia coli strain 3359 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T33_RS05195 (1077753) | 1077753..1078238 | + | 486 | WP_000758956.1 | molecular chaperone Skp | - |
| M5T33_RS05200 (1078242) | 1078242..1079267 | + | 1026 | WP_001139279.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| M5T33_RS05205 (1079372) | 1079372..1079827 | + | 456 | WP_000210739.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| M5T33_RS05210 (1079831) | 1079831..1080619 | + | 789 | WP_000565966.1 | acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase | - |
| M5T33_RS05215 (1080619) | 1080619..1081767 | + | 1149 | WP_000139654.1 | lipid-A-disaccharide synthase | - |
| M5T33_RS05220 (1081764) | 1081764..1082360 | + | 597 | WP_000569430.1 | ribonuclease HII | - |
| M5T33_RS05225 (1082397) | 1082397..1085879 | + | 3483 | WP_001294757.1 | DNA polymerase III subunit alpha | - |
| M5T33_RS05230 (1085892) | 1085892..1086851 | + | 960 | WP_000055746.1 | acetyl-CoA carboxylase carboxyl transferase subunit alpha | - |
| M5T33_RS05235 (1086950) | 1086950..1089091 | + | 2142 | WP_001020973.1 | lysine decarboxylase LdcC | - |
| M5T33_RS05240 (1089148) | 1089148..1089537 | + | 390 | WP_000901098.1 | VOC family protein | - |
| M5T33_RS05245 (1089602) | 1089602..1090900 | + | 1299 | WP_000176567.1 | tRNA lysidine(34) synthetase TilS | - |
| M5T33_RS05250 (1090949) | 1090949..1091209 | - | 261 | WP_000062312.1 | Rho-binding antiterminator | - |
| M5T33_RS05255 (1091196) | 1091196..1091396 | - | 201 | WP_000417058.1 | YaeP family protein | - |
| M5T33_RS05260 (1091562) | 1091562..1092107 | + | 546 | WP_001185290.1 | YaeQ family protein | - |
| M5T33_RS05265 (1092104) | 1092104..1092526 | + | 423 | WP_000635545.1 | alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB | - |
| M5T33_RS05270 (1092540) | 1092540..1093250 | + | 711 | WP_000239173.1 | envelope stress response activation lipoprotein NlpE | - |
| M5T33_RS05275 (1093424) | 1093424..1094248 | - | 825 | WP_001336393.1 | YaeF family permuted papain-like enzyme | - |
| M5T33_RS05280 (1094302) | 1094302..1096020 | - | 1719 | WP_001260712.1 | proline--tRNA ligase | - |
| M5T33_RS05285 (1096132) | 1096132..1096839 | - | 708 | WP_000094027.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| M5T33_RS05290 (1096836) | 1096836..1097240 | - | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| M5T33_RS05295 (1097358) | 1097358..1098173 | - | 816 | WP_000874226.1 | hypothetical protein | VF |
| M5T33_RS05300 (1098213) | 1098213..1098866 | - | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| M5T33_RS05305 (1098859) | 1098859..1099890 | - | 1032 | WP_000593994.1 | hypothetical protein | VF |
| M5T33_RS05310 (1100078) | 1100078..1100650 | + | 573 | WP_001140174.1 | hypothetical protein | VF |
| M5T33_RS05345 (1106411) | 1106411..1107214 | + | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| M5T33_RS05350 (1107211) | 1107211..1108125 | - | 915 | WP_000648572.1 | hypothetical protein | VF |
| M5T33_RS05355 (1108366) | 1108366..1109166 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| M5T33_RS05360 (1109197) | 1109197..1109793 | + | 597 | Protein_1033 | methyltransferase domain-containing protein | - |
| M5T33_RS05365 (1109841) | 1109841..1111199 | - | 1359 | WP_000644685.1 | hypothetical protein | VF |
| M5T33_RS05370 (1111271) | 1111271..1112026 | - | 756 | WP_001052713.1 | hydroxyacylglutathione hydrolase | - |
| M5T33_RS05375 (1112060) | 1112060..1112782 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| M5T33_RS05380 (1112779) | 1112779..1113246 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| M5T33_RS05385 (1113311) | 1113311..1114042 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| M5T33_RS05395 (1114579) | 1114579..1114879 | + | 301 | Protein_1039 | hypothetical protein | - |
| M5T33_RS05400 (1114935) | 1114935..1115632 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| M5T33_RS05405 (1115649) | 1115649..1115900 | + | 252 | Protein_1041 | ISAs1 family transposase | - |
| M5T33_RS05410 (1115946) | 1115946..1116314 | + | 369 | Protein_1042 | ISAs1 family transposase ISEc1 | Transposase |
| M5T33_RS05415 (1116371) | 1116371..1117141 | - | 771 | WP_001118040.1 | 2-oxoglutaramate amidase | - |
| M5T33_RS05420 (1117322) | 1117322..1117768 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| M5T33_RS05425 (1117811) | 1117811..1120255 | - | 2445 | WP_000973107.1 | hypothetical protein | VF |
| M5T33_RS05430 (1120495) | 1120495..1121073 | + | 579 | WP_000284050.1 | hypothetical protein | VF |
| M5T33_RS05435 (1121279) | 1121279..1122046 | + | 768 | WP_001365365.1 | class II glutamine amidotransferase | - |
| M5T33_RS05440 (1122017) | 1122017..1122757 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| M5T33_RS05445 (1122913) | 1122913..1123191 | - | 279 | WP_000615976.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| M5T33_RS05450 (1123194) | 1123194..1123454 | - | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| M5T33_RS05460 (1124497) | 1124497..1125270 | + | 774 | WP_016245244.1 | hypothetical protein | VF |
| M5T33_RS05465 (1125446) | 1125446..1125943 | + | 498 | WP_000006242.1 | REP-associated tyrosine transposase RayT | - |
| M5T33_RS05470 (1126167) | 1126167..1127879 | - | 1713 | Protein_1054 | hypothetical protein | VF |
| M5T33_RS05475 (1127851) | 1127851..1128636 | + | 786 | WP_000207587.1 | hypothetical protein | VF |
| M5T33_RS05480 (1128707) | 1128707..1129762 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| M5T33_RS05485 (1129814) | 1129814..1130119 | + | 306 | WP_016245245.1 | type I toxin-antitoxin system antitoxin YafN | - |
| M5T33_RS05490 (1130153) | 1130153..1130850 | + | 698 | WP_099550739.1 | IS1 family transposase | - |
| M5T33_RS05495 (1130887) | 1130887..1131285 | + | 399 | Protein_1059 | type II toxin-antitoxin system mRNA interferase toxin YafO | - |
| M5T33_RS05500 (1131295) | 1131295..1131747 | + | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| M5T33_RS05505 (1131993) | 1131993..1132196 | + | 204 | Protein_1061 | RtcB family protein | - |
| M5T33_RS05510 (1132195) | 1132195..1132716 | + | 522 | Protein_1062 | peptide chain release factor H | - |
| M5T33_RS05515 (1132773) | 1132773..1134230 | - | 1458 | WP_001293002.1 | cytosol nonspecific dipeptidase | - |
| M5T33_RS05520 (1134491) | 1134491..1134949 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (1135545) | 1135545..1135625 | + | 81 | NuclAT_11 | - | - |
| - (1135545) | 1135545..1135625 | + | 81 | NuclAT_11 | - | - |
| - (1135545) | 1135545..1135625 | + | 81 | NuclAT_11 | - | - |
| - (1135545) | 1135545..1135625 | + | 81 | NuclAT_11 | - | - |
| M5T33_RS05525 (1135041) | 1135041..1136285 | + | 1245 | WP_000189541.1 | esterase FrsA | - |
| M5T33_RS05530 (1136343) | 1136343..1136744 | + | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| M5T33_RS05535 (1136783) | 1136783..1137838 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| M5T33_RS05540 (1138126) | 1138126..1139229 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| M5T33_RS05545 (1139241) | 1139241..1140494 | + | 1254 | WP_000893249.1 | glutamate-5-semialdehyde dehydrogenase | - |
| M5T33_RS05555 (1140699) | 1140699..1141817 | - | 1119 | WP_223718984.1 | hypothetical protein ; Integrase | Integrase |
| M5T33_RS05560 (1141739) | 1141739..1142089 | - | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| M5T33_RS05565 (1142089) | 1142089..1142394 | - | 306 | WP_000206732.1 | protein YfdT | - |
| M5T33_RS05570 (1142394) | 1142394..1142756 | - | 363 | WP_001242754.1 | phage protein | - |
| M5T33_RS05575 (1142747) | 1142747..1143283 | - | 537 | WP_000008235.1 | 5'-deoxynucleotidase | - |
| M5T33_RS05580 (1143365) | 1143365..1143684 | - | 320 | Protein_1075 | hypothetical protein | - |
| M5T33_RS05585 (1143828) | 1143828..1144262 | + | 435 | WP_000016389.1 | hypothetical protein | - |
| M5T33_RS05590 (1144425) | 1144425..1145122 | + | 698 | WP_101780539.1 | IS1 family transposase IS1R | Transposase |
| M5T33_RS05595 (1145140) | 1145140..1145262 | - | 123 | Protein_1078 | tail fiber assembly protein | - |
| M5T33_RS05600 (1145262) | 1145262..1145831 | - | 570 | WP_002431159.1 | hypothetical protein | - |
| M5T33_RS05605 (1145861) | 1145861..1146415 | + | 555 | WP_000904980.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| M5T33_RS05610 (1146747) | 1146747..1148435 | - | 1689 | WP_000956451.1 | AAA family ATPase | - |
| M5T33_RS05615 (1148614) | 1148614..1149594 | + | 981 | WP_000019402.1 | IS5 family transposase IS5D | Transposase |
| M5T33_RS05620 (1149869) | 1149869..1151028 | + | 1160 | Protein_1083 | IS30 family transposase ISCfr4 | Transposase |
| M5T33_RS05625 (1151468) | 1151468..1151806 | - | 339 | Protein_1084 | LysR substrate-binding domain-containing protein | - |
| M5T33_RS05630 (1151857) | 1151857..1152813 | - | 957 | WP_000121346.1 | molybdenum cofactor insertion chaperone PaoD | - |
| M5T33_RS05635 (1152823) | 1152823..1155021 | - | 2199 | WP_000667036.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| M5T33_RS05640 (1155018) | 1155018..1155974 | - | 957 | WP_000643332.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| M5T33_RS05645 (1155971) | 1155971..1156660 | - | 690 | WP_000070699.1 | aldehyde dehydrogenase iron-sulfur subunit PaoA | - |
| M5T33_RS05650 (1157078) | 1157078..1157691 | + | 614 | Protein_1089 | YagU family protein | - |
| M5T33_RS05655 (1157939) | 1157939..1158268 | - | 330 | WP_001303809.1 | YkgJ family cysteine cluster protein | - |
| M5T33_RS05660 (1158581) | 1158581..1159291 | - | 711 | WP_001350485.1 | hypothetical protein | VF |
| M5T33_RS05665 (1159260) | 1159260..1160903 | - | 1644 | WP_001310578.1 | hypothetical protein | VF |
| M5T33_RS05670 (1160893) | 1160893..1162170 | - | 1278 | WP_000504830.1 | hypothetical protein | VF |
| M5T33_RS05680 (1162962) | 1162962..1164194 | - | 1233 | Protein_1095 | hypothetical protein | VF |
| M5T33_RS05685 (1164220) | 1164220..1164888 | - | 669 | WP_000716398.1 | hypothetical protein | VF |
| M5T33_RS05690 (1164946) | 1164946..1165533 | - | 588 | WP_000730972.1 | hypothetical protein | VF |
| M5T33_RS05695 (1165608) | 1165608..1166150 | - | 543 | WP_001301257.1 | hypothetical protein | VF |
| M5T33_RS05705 (1167410) | 1167410..1167541 | - | 132 | Protein_1100 | IS3 family transposase | - |
| M5T33_RS05710 (1167823) | 1167823..1169181 | + | 1359 | WP_000823242.1 | esterase-like activity of phytase family protein | - |
| M5T33_RS05715 (1169303) | 1169303..1169380 | - | 78 | Protein_1102 | DUF6404 family protein | - |
| M5T33_RS05720 (1169420) | 1169420..1170364 | - | 945 | Protein_1103 | IS66 family transposase ISEc8 | Transposase |
| M5T33_RS05725 (1170432) | 1170432..1170647 | + | 216 | Protein_1104 | IS3 family transposase IS911 | Transposase |
| M5T33_RS05735 (1171870) | 1171870..1172097 | + | 228 | WP_001147279.1 | protein YkgL | - |
| M5T33_RS05740 (1172132) | 1172132..1172272 | - | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| M5T33_RS05745 (1172272) | 1172272..1172535 | - | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| M5T33_RS05750 (1172899) | 1172899..1173000 | - | 102 | WP_000662258.1 | small membrane protein YkgR | - |
| M5T33_RS05755 (1173474) | 1173474..1173563 | - | 90 | Protein_1110 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|