MGE detailed information
MGE type: Prophage MGE length: 68821 bp
Accession: NZ_CP103718 Location: 2613686..2682506 Organism: Escherichia coli strain 1579 Replicon: chromosome
Accession: NZ_CP103718 Location: 2613686..2682506 Organism: Escherichia coli strain 1579 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S87_RS12565 (2609002) | 2609002..2609829 | + | 828 | WP_029702064.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| M5S87_RS12570 (2609826) | 2609826..2610683 | + | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| M5S87_RS12575 (2610680) | 2610680..2611537 | + | 858 | WP_000968125.1 | iron/manganese ABC transporter permease subunit SitD | - |
| M5S87_RS12580 (2612010) | 2612010..2612804 | + | 795 | WP_000354607.1 | hypothetical protein | - |
| M5S87_RS12585 (2612894) | 2612894..2613080 | + | 187 | Protein_2467 | DinI family protein | - |
| M5S87_RS12590 (2613350) | 2613350..2613643 | - | 294 | WP_001405873.1 | hypothetical protein | - |
| M5S87_RS12595 (2613686) | 2613686..2614726 | - | 1041 | WP_001314683.1 | tail fiber domain-containing protein | - |
| M5S87_RS12600 (2614736) | 2614736..2615017 | - | 282 | WP_000654155.1 | hypothetical protein | - |
| M5S87_RS12605 (2615017) | 2615017..2617392 | - | 2376 | WP_042099016.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M5S87_RS12610 (2617513) | 2617513..2617971 | - | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| M5S87_RS12615 (2618168) | 2618168..2618767 | - | 600 | WP_001542091.1 | hypothetical protein | VF |
| M5S87_RS12620 (2618835) | 2618835..2622314 | - | 3480 | WP_021523093.1 | host specificity protein J | - |
| M5S87_RS12625 (2622375) | 2622375..2622977 | - | 603 | WP_259411930.1 | tail assembly protein | - |
| M5S87_RS12630 (2622914) | 2622914..2623657 | - | 744 | WP_032153655.1 | C40 family peptidase | - |
| M5S87_RS12635 (2623663) | 2623663..2624361 | - | 699 | WP_001551186.1 | phage minor tail protein L | - |
| M5S87_RS12640 (2624361) | 2624361..2624690 | - | 330 | WP_000847345.1 | phage tail protein | - |
| M5S87_RS12645 (2624687) | 2624687..2627248 | - | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| M5S87_RS12650 (2627241) | 2627241..2627675 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| M5S87_RS12655 (2627657) | 2627657..2628079 | - | 423 | WP_000479153.1 | phage minor tail protein G | - |
| M5S87_RS12660 (2628095) | 2628095..2628835 | - | 741 | WP_001349920.1 | phage tail protein | - |
| M5S87_RS12665 (2628843) | 2628843..2629238 | - | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| M5S87_RS12670 (2629235) | 2629235..2629813 | - | 579 | WP_000975070.1 | phage tail protein | - |
| M5S87_RS12675 (2629825) | 2629825..2630178 | - | 354 | WP_000752979.1 | head-tail joining protein | - |
| M5S87_RS12680 (2630190) | 2630190..2630588 | - | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| M5S87_RS12685 (2630630) | 2630630..2631655 | - | 1026 | WP_000063277.1 | major capsid protein | - |
| M5S87_RS12690 (2631710) | 2631710..2632042 | - | 333 | WP_001708751.1 | head decoration protein | - |
| M5S87_RS12695 (2632052) | 2632052..2633371 | - | 1320 | WP_020233915.1 | S49 family peptidase | - |
| M5S87_RS12700 (2633352) | 2633352..2634953 | - | 1602 | WP_001356819.1 | phage portal protein | - |
| M5S87_RS12705 (2634950) | 2634950..2635156 | - | 207 | WP_000198149.1 | gpW family protein | - |
| M5S87_RS12710 (2635153) | 2635153..2637078 | - | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| M5S87_RS12715 (2637053) | 2637053..2637598 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| M5S87_RS12720 (2637987) | 2637987..2638220 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| M5S87_RS12725 (2638278) | 2638278..2638688 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| M5S87_RS12730 (2638840) | 2638840..2639013 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| M5S87_RS12735 (2639185) | 2639185..2639340 | - | 156 | WP_001309517.1 | protein YnfN | - |
| M5S87_RS12740 (2639420) | 2639420..2639485 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| M5S87_RS12745 (2639488) | 2639488..2639676 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| M5S87_RS12750 (2639687) | 2639687..2639899 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| M5S87_RS12755 (2640262) | 2640262..2640759 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| M5S87_RS12760 (2640756) | 2640756..2641289 | - | 534 | WP_001092971.1 | lysozyme | - |
| M5S87_RS12765 (2641286) | 2641286..2641597 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| M5S87_RS12770 (2641602) | 2641602..2641817 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| M5S87_RS12775 (2642037) | 2642037..2642207 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| M5S87_RS12780 (2642374) | 2642374..2642832 | - | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| M5S87_RS12785 (2643283) | 2643283..2643498 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| M5S87_RS12790 (2643799) | 2643799..2644011 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| M5S87_RS12795 (2644066) | 2644066..2644155 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| M5S87_RS12800 (2644433) | 2644433..2645185 | - | 753 | WP_001047135.1 | antitermination protein | - |
| M5S87_RS12805 (2645199) | 2645199..2646248 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| M5S87_RS12810 (2646250) | 2646250..2646528 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| M5S87_RS12815 (2646595) | 2646595..2646846 | - | 252 | WP_000980994.1 | protein Rem | - |
| M5S87_RS12820 (2647063) | 2647063..2647218 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| M5S87_RS12825 (2647290) | 2647290..2647577 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| M5S87_RS12830 (2647577) | 2647577..2647816 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| M5S87_RS12835 (2647841) | 2647841..2648146 | + | 306 | WP_001326990.1 | protein YdfV | - |
| M5S87_RS12840 (2648349) | 2648349..2648681 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| M5S87_RS12845 (2649118) | 2649118..2649267 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| M5S87_RS12850 (2649388) | 2649388..2650410 | - | 1023 | Protein_2520 | ISNCY family transposase ISCARN112 | Transposase |
| M5S87_RS12855 (2650915) | 2650915..2651937 | - | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| M5S87_RS12860 (2651940) | 2651940..2652554 | - | 615 | WP_001265627.1 | hypothetical protein | - |
| M5S87_RS12865 (2652763) | 2652763..2653428 | - | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| M5S87_RS12870 (2653631) | 2653631..2654029 | - | 399 | WP_001151242.1 | DUF977 family protein | - |
| M5S87_RS12875 (2654070) | 2654070..2655035 | - | 966 | WP_000054487.1 | hypothetical protein | - |
| M5S87_RS12880 (2655016) | 2655016..2655537 | - | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| M5S87_RS12885 (2655521) | 2655521..2655748 | - | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| M5S87_RS12890 (2655829) | 2655829..2656236 | + | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| M5S87_RS12895 (2656405) | 2656405..2656560 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| M5S87_RS12900 (2656562) | 2656562..2657137 | + | 576 | WP_000344950.1 | hypothetical protein | - |
| M5S87_RS12905 (2657624) | 2657624..2657812 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| M5S87_RS12910 (2657809) | 2657809..2658000 | + | 192 | WP_001083276.1 | lysis protein YdfD | - |
| M5S87_RS12915 (2658094) | 2658094..2660565 | + | 2472 | WP_000048363.1 | exonuclease | - |
| M5S87_RS12920 (2660638) | 2660638..2660889 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| M5S87_RS12925 (2660960) | 2660960..2661637 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| M5S87_RS12930 (2661637) | 2661637..2661984 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| M5S87_RS12935 (2662004) | 2662004..2663575 | + | 1572 | WP_029392005.1 | IS66 family transposase ISCro1 | Transposase |
| M5S87_RS12940 (2663631) | 2663631..2664911 | + | 1281 | WP_021523105.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| M5S87_RS12945 (2665099) | 2665099..2666118 | - | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| M5S87_RS12950 (2666130) | 2666130..2667344 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| M5S87_RS12955 (2667550) | 2667550..2667876 | - | 327 | WP_001314753.1 | YnfA family protein | - |
| M5S87_RS12960 (2668011) | 2668011..2668352 | + | 342 | WP_000705205.1 | DUF1283 family protein | - |
| M5S87_RS12965 (2668387) | 2668387..2668947 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| M5S87_RS12970 (2668950) | 2668950..2669660 | - | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| M5S87_RS12975 (2669768) | 2669768..2670073 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| M5S87_RS12980 (2670272) | 2670272..2672698 | + | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| M5S87_RS12985 (2672759) | 2672759..2675182 | + | 2424 | WP_072170800.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| M5S87_RS12990 (2675193) | 2675193..2675810 | + | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| M5S87_RS12995 (2675812) | 2675812..2676666 | + | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| M5S87_RS13000 (2676709) | 2676709..2677323 | + | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| M5S87_RS13005 (2677482) | 2677482..2678690 | + | 1209 | Protein_2551 | voltage-gated ClC-type chloride channel ClcB | - |
| M5S87_RS13010 (2678833) | 2678833..2679291 | + | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| M5S87_RS13015 (2679438) | 2679438..2680133 | - | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| M5S87_RS13020 (2680258) | 2680258..2681478 | - | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
| M5S87_RS13025 (2681613) | 2681613..2682506 | - | 894 | WP_001019534.1 | HTH-type transcriptional regulator HdfR | VF |
| M5S87_RS13030 (2682613) | 2682613..2683866 | + | 1254 | WP_000091840.1 | MFS transporter | - |
| M5S87_RS13035 (2684290) | 2684290..2684598 | + | 309 | WP_001362115.1 | acid resistance repetitive basic protein Asr | - |
| M5S87_RS13040 (2684691) | 2684691..2684774 | + | 84 | WP_000233090.1 | hypothetical protein | - |
| M5S87_RS13045 (2684874) | 2684874..2685695 | + | 822 | WP_001260850.1 | serine protease | - |
| M5S87_RS13050 (2685734) | 2685734..2686063 | - | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| M5S87_RS13055 (2686050) | 2686050..2686415 | - | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|