MGE detailed information
MGE type: Prophage MGE length: 51140 bp
Accession: NZ_CP103718 Location: 2358384..2409523 Organism: Escherichia coli strain 1579 Replicon: chromosome
Accession: NZ_CP103718 Location: 2358384..2409523 Organism: Escherichia coli strain 1579 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S87_RS11335 (2353880) | 2353880..2354179 | - | 300 | Protein_2217 | sensor domain-containing diguanylate cyclase | - |
| M5S87_RS11340 (2354373) | 2354373..2354420 | + | 48 | WP_211180494.1 | protein YnaN | - |
| M5S87_RS11345 (2354434) | 2354434..2355417 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| M5S87_RS11350 (2355895) | 2355895..2357268 | + | 1374 | WP_000123748.1 | ATP-dependent RNA helicase DbpA | - |
| M5S87_RS11355 (2357397) | 2357397..2358332 | - | 936 | WP_001523172.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| M5S87_RS11360 (2358384) | 2358384..2359619 | - | 1236 | WP_000040839.1 | ATP-dependent 6-phosphofructokinase isozyme 1 ; Integrase | Integrase |
| M5S87_RS11365 (2359621) | 2359621..2359836 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (2359940) | 2359940..2360118 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2359940) | 2359940..2360118 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2359940) | 2359940..2360118 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2359940) | 2359940..2360118 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| M5S87_RS11370 (2359936) | 2359936..2360124 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| M5S87_RS11375 (2360162) | 2360162..2360311 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| M5S87_RS11380 (2360367) | 2360367..2361176 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| M5S87_RS11385 (2361169) | 2361169..2363769 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| M5S87_RS11390 (2363871) | 2363871..2364146 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| M5S87_RS11395 (2364221) | 2364221..2364391 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| M5S87_RS11400 (2364391) | 2364391..2364612 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| M5S87_RS11405 (2365054) | 2365054..2365542 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| M5S87_RS11410 (2365539) | 2365539..2365694 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| M5S87_RS11415 (2365705) | 2365705..2365839 | - | 135 | WP_000233809.1 | phage protein | - |
| M5S87_RS11420 (2366127) | 2366127..2366546 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| M5S87_RS11425 (2366626) | 2366626..2366880 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| M5S87_RS11430 (2366877) | 2366877..2367299 | + | 423 | WP_000693803.1 | toxin YdaT family protein | - |
| M5S87_RS11435 (2367377) | 2367377..2368165 | + | 789 | WP_001396581.1 | hypothetical protein | - |
| M5S87_RS11440 (2368172) | 2368172..2368918 | + | 747 | WP_020233967.1 | ATP-binding protein | - |
| M5S87_RS11445 (2368941) | 2368941..2369702 | + | 762 | WP_000450716.1 | DUF1627 domain-containing protein | - |
| M5S87_RS11450 (2369718) | 2369718..2370140 | + | 423 | WP_029702111.1 | DUF977 family protein | - |
| M5S87_RS11455 (2370302) | 2370302..2370805 | + | 504 | WP_000137958.1 | hypothetical protein | - |
| M5S87_RS11460 (2370926) | 2370926..2371699 | - | 774 | WP_000200358.1 | KilA-N domain-containing protein | - |
| M5S87_RS11465 (2372222) | 2372222..2372347 | + | 126 | WP_001445775.1 | Hok/Gef family protein | - |
| M5S87_RS11470 (2372430) | 2372430..2372771 | - | 342 | WP_001445776.1 | DUF1971 domain-containing protein | - |
| M5S87_RS11475 (2373639) | 2373639..2374238 | + | 600 | WP_000940344.1 | DUF1367 family protein | - |
| M5S87_RS11480 (2374238) | 2374238..2374528 | + | 291 | WP_000228032.1 | DUF1364 domain-containing protein | - |
| M5S87_RS11485 (2374525) | 2374525..2375067 | + | 543 | WP_000640106.1 | DUF1133 family protein | - |
| M5S87_RS11490 (2375289) | 2375289..2375858 | + | 570 | WP_001208722.1 | hypothetical protein | - |
| M5S87_RS11495 (2375827) | 2375827..2376042 | - | 216 | WP_152948782.1 | hypothetical protein | - |
| M5S87_RS11500 (2376206) | 2376206..2376547 | + | 342 | WP_000781775.1 | phage holin, lambda family | - |
| M5S87_RS11505 (2376551) | 2376551..2377027 | + | 477 | WP_023153991.1 | glycoside hydrolase family protein | - |
| M5S87_RS11510 (2377244) | 2377244..2377429 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| M5S87_RS11515 (2377626) | 2377626..2379083 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| M5S87_RS11520 (2379221) | 2379221..2379478 | + | 258 | Protein_2254 | ParB/Srx family N-terminal domain-containing protein | - |
| M5S87_RS11525 (2380005) | 2380005..2380937 | + | 933 | WP_020233805.1 | hypothetical protein | - |
| M5S87_RS11530 (2380915) | 2380915..2381124 | + | 210 | WP_000126788.1 | hypothetical protein | - |
| M5S87_RS11535 (2381128) | 2381128..2382222 | + | 1095 | WP_000089448.1 | terminase small subunit | - |
| M5S87_RS11540 (2382203) | 2382203..2383504 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| M5S87_RS11545 (2383507) | 2383507..2384913 | + | 1407 | WP_000763701.1 | DUF4055 domain-containing protein | - |
| M5S87_RS11550 (2384897) | 2384897..2386009 | + | 1113 | WP_001363932.1 | phage minor head protein | - |
| M5S87_RS11555 (2386114) | 2386114..2386878 | + | 765 | WP_029702112.1 | hypothetical protein | - |
| M5S87_RS11560 (2386977) | 2386977..2388116 | + | 1140 | WP_020233804.1 | P22 phage major capsid protein family protein | - |
| M5S87_RS11565 (2388159) | 2388159..2388335 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| M5S87_RS11570 (2388339) | 2388339..2388734 | + | 396 | WP_000634214.1 | hypothetical protein | - |
| M5S87_RS11575 (2388734) | 2388734..2389117 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| M5S87_RS11580 (2389118) | 2389118..2389498 | + | 381 | WP_001029815.1 | hypothetical protein | - |
| M5S87_RS11585 (2389495) | 2389495..2389887 | + | 393 | WP_000673077.1 | phage tail terminator-like protein | - |
| M5S87_RS11590 (2389914) | 2389914..2390876 | + | 963 | WP_001328756.1 | phage tail tube protein | - |
| M5S87_RS11595 (2391027) | 2391027..2391386 | + | 360 | WP_122452218.1 | protein YdaY | - |
| M5S87_RS11600 (2391494) | 2391494..2391694 | + | 201 | WP_032139919.1 | hypothetical protein | - |
| M5S87_RS11605 (2391858) | 2391858..2395091 | + | 3234 | WP_023153989.1 | phage tail tape measure protein | - |
| M5S87_RS11610 (2395084) | 2395084..2395422 | + | 339 | WP_000024051.1 | phage tail protein | - |
| M5S87_RS11615 (2395422) | 2395422..2396120 | + | 699 | WP_001152432.1 | phage minor tail protein L | - |
| M5S87_RS11620 (2396126) | 2396126..2396869 | + | 744 | WP_001351716.1 | C40 family peptidase | - |
| M5S87_RS11625 (2396866) | 2396866..2397407 | + | 542 | Protein_2275 | tail assembly protein | - |
| M5S87_RS11630 (2397468) | 2397468..2400947 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| M5S87_RS11635 (2401015) | 2401015..2401614 | + | 600 | WP_001542091.1 | Na(+)/H(+) antiporter NhaB | VF |
| M5S87_RS11640 (2401811) | 2401811..2402269 | + | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| M5S87_RS11645 (2402390) | 2402390..2404789 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M5S87_RS11650 (2404786) | 2404786..2405067 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| M5S87_RS11655 (2405077) | 2405077..2405781 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| M5S87_RS11660 (2405792) | 2405792..2406085 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| M5S87_RS11665 (2406105) | 2406105..2406215 | + | 111 | Protein_2283 | tail fiber assembly protein | - |
| M5S87_RS11670 (2406313) | 2406313..2406904 | - | 592 | Protein_2284 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| M5S87_RS11675 (2407221) | 2407221..2407454 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| M5S87_RS11680 (2407523) | 2407523..2407636 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| M5S87_RS11685 (2408240) | 2408240..2409523 | + | 1284 | Protein_2287 | MHS family MFS transporter YdfJ | - |
| M5S87_RS11690 (2409612) | 2409612..2411072 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| M5S87_RS11695 (2411108) | 2411108..2411311 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| M5S87_RS11700 (2411489) | 2411489..2412175 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator rspR | - |
| M5S87_RS11705 (2412264) | 2412264..2413010 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|