MGE detailed information
MGE type: Prophage MGE length: 62980 bp
Accession: NZ_CP103633 Location: 2448627..2511606 Organism: Escherichia coli strain 2900 Replicon: chromosome
Accession: NZ_CP103633 Location: 2448627..2511606 Organism: Escherichia coli strain 2900 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S90_RS11640 (2444526) | 2444526..2445746 | + | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
| M5S90_RS11645 (2445871) | 2445871..2446566 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| M5S90_RS11650 (2446519) | 2446519..2447811 | - | 1293 | WP_071593650.1 | voltage-gated ClC-type chloride channel ClcB | - |
| M5S90_RS11655 (2447970) | 2447970..2448584 | - | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| M5S90_RS11660 (2448627) | 2448627..2449481 | - | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| M5S90_RS11665 (2449483) | 2449483..2450100 | - | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| M5S90_RS11670 (2450111) | 2450111..2452534 | - | 2424 | WP_072170800.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| M5S90_RS11675 (2452595) | 2452595..2455021 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| M5S90_RS11680 (2455220) | 2455220..2455525 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| M5S90_RS11685 (2455633) | 2455633..2456343 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| M5S90_RS11690 (2456346) | 2456346..2456906 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| M5S90_RS11695 (2456941) | 2456941..2457282 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| M5S90_RS11700 (2457417) | 2457417..2457743 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| M5S90_RS11705 (2457949) | 2457949..2459163 | + | 1215 | WP_001457992.1 | starvation-sensing protein RspA | - |
| M5S90_RS11710 (2459175) | 2459175..2460194 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| M5S90_RS11715 (2460382) | 2460382..2461662 | - | 1281 | WP_021523105.1 | Putative defective protein IntQ ; Integrase | Integrase |
| M5S90_RS11720 (2461718) | 2461718..2463289 | - | 1572 | WP_029392005.1 | IS66 family transposase ISCro1 | Transposase |
| M5S90_RS11725 (2463309) | 2463309..2463656 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| M5S90_RS11730 (2463656) | 2463656..2464333 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| M5S90_RS11735 (2464404) | 2464404..2464655 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| M5S90_RS11740 (2464728) | 2464728..2467199 | - | 2472 | WP_000048363.1 | exonuclease | - |
| M5S90_RS11745 (2467293) | 2467293..2467484 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| M5S90_RS11750 (2467481) | 2467481..2467669 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| M5S90_RS11755 (2468156) | 2468156..2468731 | - | 576 | WP_000344950.1 | hypothetical protein | - |
| M5S90_RS11760 (2468733) | 2468733..2468888 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| M5S90_RS11765 (2469057) | 2469057..2469464 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| M5S90_RS11770 (2469545) | 2469545..2469772 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| M5S90_RS11775 (2469756) | 2469756..2470277 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| M5S90_RS11780 (2470258) | 2470258..2471223 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| M5S90_RS11785 (2471264) | 2471264..2471662 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| M5S90_RS11790 (2471865) | 2471865..2472530 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| M5S90_RS11795 (2472739) | 2472739..2473353 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| M5S90_RS11800 (2473356) | 2473356..2474378 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| M5S90_RS11805 (2474883) | 2474883..2475905 | + | 1023 | Protein_2309 | ISNCY family transposase ISCARN112 | Transposase |
| M5S90_RS11810 (2476026) | 2476026..2476175 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| M5S90_RS11815 (2476612) | 2476612..2476944 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| M5S90_RS11820 (2477147) | 2477147..2477452 | - | 306 | WP_001326990.1 | protein YdfV | - |
| M5S90_RS11825 (2477477) | 2477477..2477716 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| M5S90_RS11830 (2477716) | 2477716..2478003 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| M5S90_RS11835 (2478075) | 2478075..2478230 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| M5S90_RS11840 (2478447) | 2478447..2478698 | + | 252 | WP_000980994.1 | protein Rem | - |
| M5S90_RS11845 (2478765) | 2478765..2479043 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| M5S90_RS11850 (2479045) | 2479045..2480094 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| M5S90_RS11855 (2480108) | 2480108..2480860 | + | 753 | WP_001047135.1 | antitermination protein | - |
| M5S90_RS11860 (2481138) | 2481138..2481227 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| M5S90_RS11865 (2481282) | 2481282..2481494 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| M5S90_RS11870 (2481795) | 2481795..2482010 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| M5S90_RS11875 (2482461) | 2482461..2482919 | + | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| M5S90_RS11880 (2483086) | 2483086..2483256 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| M5S90_RS11885 (2483476) | 2483476..2483691 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| M5S90_RS11890 (2483696) | 2483696..2484007 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| M5S90_RS11895 (2484004) | 2484004..2484537 | + | 534 | WP_001092971.1 | lysozyme | - |
| M5S90_RS11900 (2484534) | 2484534..2485031 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| M5S90_RS11905 (2485394) | 2485394..2485606 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| M5S90_RS11910 (2485617) | 2485617..2485805 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| M5S90_RS11915 (2485808) | 2485808..2485873 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| M5S90_RS11920 (2485953) | 2485953..2486108 | + | 156 | WP_001309517.1 | protein YnfN | - |
| M5S90_RS11925 (2486280) | 2486280..2486453 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| M5S90_RS11930 (2486605) | 2486605..2487015 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| M5S90_RS11935 (2487073) | 2487073..2487306 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| M5S90_RS11940 (2487695) | 2487695..2488240 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| M5S90_RS11945 (2488215) | 2488215..2490140 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| M5S90_RS11950 (2490137) | 2490137..2490343 | + | 207 | WP_000198149.1 | gpW family protein | - |
| M5S90_RS11955 (2490340) | 2490340..2491941 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| M5S90_RS11960 (2491922) | 2491922..2493241 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| M5S90_RS11965 (2493251) | 2493251..2493583 | + | 333 | WP_001708751.1 | head decoration protein | - |
| M5S90_RS11970 (2493638) | 2493638..2494663 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| M5S90_RS11975 (2494705) | 2494705..2495103 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| M5S90_RS11980 (2495115) | 2495115..2495468 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| M5S90_RS11985 (2495480) | 2495480..2496058 | + | 579 | WP_000975070.1 | phage tail protein | - |
| M5S90_RS11990 (2496055) | 2496055..2496450 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| M5S90_RS11995 (2496458) | 2496458..2497198 | + | 741 | WP_001349920.1 | phage tail protein | - |
| M5S90_RS12000 (2497214) | 2497214..2497636 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| M5S90_RS12005 (2497618) | 2497618..2498052 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| M5S90_RS12010 (2498045) | 2498045..2500606 | + | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| M5S90_RS12015 (2500603) | 2500603..2500932 | + | 330 | WP_000847345.1 | phage tail protein | - |
| M5S90_RS12020 (2500932) | 2500932..2501630 | + | 699 | WP_160187893.1 | phage minor tail protein L | - |
| M5S90_RS12025 (2501636) | 2501636..2502379 | + | 744 | WP_001351716.1 | C40 family peptidase | - |
| M5S90_RS12030 (2502376) | 2502376..2502917 | + | 542 | Protein_2354 | tail assembly protein | - |
| M5S90_RS12035 (2502978) | 2502978..2506457 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| M5S90_RS12040 (2506525) | 2506525..2507124 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| M5S90_RS12045 (2507321) | 2507321..2507779 | + | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| M5S90_RS12050 (2507900) | 2507900..2510275 | + | 2376 | WP_042099016.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M5S90_RS12055 (2510275) | 2510275..2510556 | + | 282 | WP_000654155.1 | hypothetical protein | - |
| M5S90_RS12060 (2510566) | 2510566..2511606 | + | 1041 | WP_001314683.1 | tail fiber domain-containing protein | - |
| M5S90_RS12065 (2511649) | 2511649..2511942 | + | 294 | WP_001405873.1 | hypothetical protein | - |
| M5S90_RS12070 (2512212) | 2512212..2512398 | - | 187 | Protein_2362 | DinI family protein | - |
| M5S90_RS12075 (2512488) | 2512488..2513282 | - | 795 | WP_000354607.1 | hypothetical protein | - |
| M5S90_RS12080 (2513755) | 2513755..2514612 | - | 858 | WP_000968125.1 | iron/manganese ABC transporter permease subunit SitD | - |
| M5S90_RS12085 (2514609) | 2514609..2515466 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| M5S90_RS12090 (2515463) | 2515463..2516290 | - | 828 | WP_000983718.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|