MGE detailed information
MGE type: Conjugative plasmid MGE length: 94558 bp
Accession: NZ_CP103535 Location: 1..94558 Organism: Escherichia coli strain 4238 Replicon: plasmid pMB9108_2
Accession: NZ_CP103535 Location: 1..94558 Organism: Escherichia coli strain 4238 Replicon: plasmid pMB9108_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T38_RS23935 (M5T38_23935) | 1..501 | + | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
| M5T38_RS23940 (M5T38_23940) | 1234..1668 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| M5T38_RS23945 (M5T38_23945) | 1761..2027 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| M5T38_RS23950 (M5T38_23950) | 2213..3096 | + | 884 | Protein_3 | IS3 family transposase IS1203 | Transposase |
| M5T38_RS23955 (M5T38_23955) | 3187..3933 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| M5T38_RS23960 (M5T38_23960) | 3948..5489 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| M5T38_RS23965 (M5T38_23965) | 5683..6012 | + | 330 | Protein_6 | integrase core domain-containing protein | - |
| M5T38_RS23970 (M5T38_23970) | 6103..6492 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| M5T38_RS23975 (M5T38_23975) | 6489..7391 | + | 903 | WP_044783606.1 | Recombination-promoting nuclease RpnA | VF |
| M5T38_RS23980 (M5T38_23980) | 7391..7663 | + | 273 | WP_259419150.1 | hypothetical protein | - |
| M5T38_RS23990 (M5T38_23990) | 8968..9219 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| M5T38_RS23995 (M5T38_23995) | 9797..10645 | + | 849 | WP_001077034.1 | DUF4942 domain-containing protein | - |
| M5T38_RS24000 (M5T38_24000) | 10731..11066 | - | 336 | WP_000157083.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| M5T38_RS24005 (M5T38_24005) | 11299..11631 | + | 333 | WP_001291057.1 | plasmid mobilization protein MobA | - |
| M5T38_RS24010 (M5T38_24010) | 11643..14363 | + | 2721 | WP_059332184.1 | Protein TraI | Relaxase |
| M5T38_RS24015 (M5T38_24015) | 14584..16884 | - | 2301 | WP_000077653.1 | F-type conjugative transfer protein TrbC | - |
| M5T38_RS24020 (M5T38_24020) | 16865..17989 | - | 1125 | WP_000152384.1 | DsbC family protein | - |
| M5T38_RS24025 (M5T38_24025) | 17986..19266 | - | 1281 | WP_012680989.1 | IncI1-type conjugal transfer protein TrbA | - |
| M5T38_RS24030 (M5T38_24030) | 19640..19786 | + | 147 | WP_001346191.1 | hypothetical protein | - |
| M5T38_RS24035 (M5T38_24035) | 20367..20618 | + | 252 | WP_001081067.1 | DinQ-like type I toxin DqlB | - |
| M5T38_RS24040 (M5T38_24040) | 20681..20857 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| M5T38_RS24045 (M5T38_24045) | 21008..21475 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| M5T38_RS24050 (M5T38_24050) | 21635..22258 | + | 624 | WP_001155250.1 | helix-turn-helix domain-containing protein | - |
| M5T38_RS24055 (M5T38_24055) | 22456..22671 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| M5T38_RS24060 (M5T38_24060) | 22675..23043 | - | 369 | WP_001302696.1 | hypothetical protein | - |
| M5T38_RS24065 (M5T38_24065) | 23055..23246 | - | 192 | WP_000751583.1 | hypothetical protein | - |
| M5T38_RS24070 (M5T38_24070) | 23343..23585 | - | 243 | WP_001363144.1 | hypothetical protein | - |
| M5T38_RS24075 (M5T38_24075) | 23915..24067 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| M5T38_RS24080 (M5T38_24080) | 24205..25791 | - | 1587 | WP_000004560.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| M5T38_RS24085 (M5T38_24085) | 26065..26718 | - | 654 | WP_001402874.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| M5T38_RS24090 (M5T38_24090) | 26806..28971 | - | 2166 | WP_000691807.1 | DotA/TraY family protein | - |
| M5T38_RS24095 (M5T38_24095) | 29046..29615 | - | 570 | WP_021565162.1 | conjugal transfer protein TraX | - |
| M5T38_RS24100 (M5T38_24100) | 29612..30817 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| M5T38_RS24105 (M5T38_24105) | 30775..31395 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| M5T38_RS24110 (M5T38_24110) | 31395..34439 | - | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| M5T38_RS24115 (M5T38_24115) | 34734..35552 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| M5T38_RS24120 (M5T38_24120) | 35566..35718 | - | 153 | Protein_37 | TraS | - |
| M5T38_RS24125 (M5T38_24125) | 35775..36173 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| M5T38_RS24130 (M5T38_24130) | 36220..36750 | - | 531 | WP_000987021.1 | conjugal transfer protein TraQ | - |
| M5T38_RS24135 (M5T38_24135) | 36747..37460 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| M5T38_RS24140 (M5T38_24140) | 37457..38794 | - | 1338 | WP_001272018.1 | conjugal transfer protein TraO | - |
| M5T38_RS24145 (M5T38_24145) | 38798..39772 | - | 975 | WP_000547385.1 | hypothetical protein | VF |
| M5T38_RS24150 (M5T38_24150) | 39783..40478 | - | 696 | WP_059332170.1 | DotI/IcmL family type IV secretion protein | - |
| M5T38_RS24155 (M5T38_24155) | 40490..40840 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| M5T38_RS24160 (M5T38_24160) | 40857..44918 | - | 4062 | WP_059332171.1 | DUF5710 domain-containing protein | - |
| M5T38_RS24165 (M5T38_24165) | 44982..45272 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| M5T38_RS24170 (M5T38_24170) | 45269..46417 | - | 1149 | WP_000775212.1 | putative protein YggR | VF |
| M5T38_RS24175 (M5T38_24175) | 46401..47237 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| M5T38_RS24180 (M5T38_24180) | 47234..47692 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| M5T38_RS24185 (M5T38_24185) | 47796..48998 | - | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
| M5T38_RS24190 (M5T38_24190) | 49100..49921 | - | 822 | WP_000845373.1 | hypothetical protein | - |
| M5T38_RS24195 (M5T38_24195) | 50086..50280 | - | 195 | Protein_52 | integrase | - |
| M5T38_RS24200 (M5T38_24200) | 50394..51755 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
| M5T38_RS24205 (M5T38_24205) | 51773..52399 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
| M5T38_RS24210 (M5T38_24210) | 52415..52900 | - | 486 | WP_001080768.1 | hypothetical protein | VF |
| M5T38_RS24215 (M5T38_24215) | 52945..53481 | - | 537 | WP_000111534.1 | hypothetical protein | VF |
| M5T38_RS24220 (M5T38_24220) | 53543..54637 | - | 1095 | WP_000697158.1 | type II secretion system F family protein | - |
| M5T38_RS24225 (M5T38_24225) | 54639..56147 | - | 1509 | WP_000880807.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| M5T38_RS24230 (M5T38_24230) | 56250..56708 | - | 459 | WP_000095885.1 | hypothetical protein | VF |
| M5T38_RS24235 (M5T38_24235) | 56698..57993 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| M5T38_RS24240 (M5T38_24240) | 58014..59633 | - | 1620 | WP_001035565.1 | Outer membrane lipoprotein BfpB | VF |
| M5T38_RS24245 (M5T38_24245) | 59665..60102 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| M5T38_RS24250 (M5T38_24250) | 60106..61176 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| M5T38_RS24255 (M5T38_24255) | 61403..61738 | - | 336 | WP_001335624.1 | hypothetical protein | - |
| M5T38_RS24260 (M5T38_24260) | 61854..62096 | - | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
| M5T38_RS24265 (M5T38_24265) | 62177..63871 | - | 1695 | WP_000482665.1 | flotillin family protein | - |
| M5T38_RS24270 (M5T38_24270) | 63898..64518 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| M5T38_RS24275 (M5T38_24275) | 64785..65447 | - | 663 | WP_000154142.1 | hypothetical protein | - |
| M5T38_RS24280 (M5T38_24280) | 65588..66229 | - | 642 | WP_000335849.1 | transcription termination/antitermination NusG family protein | - |
| M5T38_RS24285 (M5T38_24285) | 66930..67961 | + | 1032 | WP_000907880.1 | plasmid replication initiator RepA | - |
| M5T38_RS24290 (M5T38_24290) | 68869..69153 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| M5T38_RS24295 (M5T38_24295) | 69153..69428 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M5T38_RS24300 (M5T38_24300) | 69534..69737 | + | 204 | Protein_73 | hypothetical protein | - |
| M5T38_RS24305 (M5T38_24305) | 70006..70272 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| M5T38_RS24310 (M5T38_24310) | 70510..71112 | - | 603 | WP_000517694.1 | ProQ/FINO family protein | - |
| M5T38_RS24315 (M5T38_24315) | 71466..72077 | + | 612 | Protein_76 | hypothetical protein | - |
| M5T38_RS24320 (M5T38_24320) | 72225..73085 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| M5T38_RS24325 (M5T38_24325) | 73268..73825 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| M5T38_RS24330 (M5T38_24330) | 73989..76994 | + | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| M5T38_RS24335 (M5T38_24335) | 77028..77768 | + | 741 | Protein_80 | hypothetical protein | - |
| M5T38_RS24340 (M5T38_24340) | 78018..79238 | - | 1221 | WP_000343765.1 | ISL3 family transposase ISEc53 | Transposase |
| M5T38_RS24345 (M5T38_24345) | 79257..79775 | - | 519 | WP_000115885.1 | hypothetical protein | VF |
| M5T38_RS24350 (M5T38_24350) | 80208..80510 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| M5T38_RS24355 (M5T38_24355) | 80507..81133 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| M5T38_RS24360 (M5T38_24360) | 81361..82632 | - | 1272 | WP_065652137.1 | Y-family DNA polymerase | - |
| M5T38_RS24365 (M5T38_24365) | 82632..83069 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| M5T38_RS24370 (M5T38_24370) | 83066..83314 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| M5T38_RS24375 (M5T38_24375) | 83732..84634 | + | 903 | WP_023383827.1 | DUF1281 domain-containing protein | - |
| M5T38_RS24380 (M5T38_24380) | 84631..84942 | + | 312 | WP_001310011.1 | hypothetical protein | - |
| M5T38_RS24385 (M5T38_24385) | 85019..85702 | + | 684 | WP_000086126.1 | DNA methylase | - |
| M5T38_RS24390 (M5T38_24390) | 85703..85924 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| M5T38_RS24395 (M5T38_24395) | 85854..86372 | + | 519 | WP_224162043.1 | DUF1380 family protein | - |
| M5T38_RS24400 (M5T38_24400) | 86418..87194 | + | 777 | WP_032230682.1 | hypothetical protein | - |
| M5T38_RS24405 (M5T38_24405) | 87610..88035 | + | 426 | WP_001198900.1 | antirestriction protein | - |
| M5T38_RS24410 (M5T38_24410) | 88082..88504 | + | 423 | WP_000271688.1 | DUF1380 family protein | - |
| M5T38_RS24415 (M5T38_24415) | 88501..88692 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| M5T38_RS24420 (M5T38_24420) | 88830..89111 | + | 282 | WP_154671919.1 | hypothetical protein | - |
| M5T38_RS24425 (M5T38_24425) | 89464..89991 | + | 528 | WP_001276115.1 | single-stranded DNA-binding protein | - |
| M5T38_RS24430 (M5T38_24430) | 90049..90282 | + | 234 | WP_000005981.1 | DUF905 domain-containing protein | - |
| M5T38_RS24435 (M5T38_24435) | 90341..92299 | + | 1959 | WP_052971411.1 | ParB/RepB/Spo0J family partition protein | - |
| M5T38_RS24440 (M5T38_24440) | 92354..92788 | + | 435 | WP_000845903.1 | conjugation system SOS inhibitor PsiB | - |
| M5T38_RS24445 (M5T38_24445) | 92785..93504 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| M5T38_RS24450 (M5T38_24450) | 93501..94097 | + | 597 | WP_000977995.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|