MGE detailed information
MGE type: Genomic_island MGE length: 24535 bp
Accession: NZ_CP103401 Location: 3482909..3507443 Organism: Pantoea agglomerans strain CHTF15 Replicon: chromosome
Accession: NZ_CP103401 Location: 3482909..3507443 Organism: Pantoea agglomerans strain CHTF15 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYF24_RS16370 (3478203) | 3478203..3479627 | + | 1425 | WP_258992891.1 | fructose-specific PTS transporter subunit EIIC | - |
| NYF24_RS16375 (3479633) | 3479633..3480493 | + | 861 | WP_167423608.1 | ketose-bisphosphate aldolase | - |
| NYF24_RS16380 (3480633) | 3480633..3480908 | - | 276 | WP_137228347.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NYF24_RS16385 (3480912) | 3480912..3481160 | - | 249 | WP_022625341.1 | ribbon-helix-helix domain-containing protein | - |
| NYF24_RS16390 (3481466) | 3481466..3482284 | - | 819 | WP_258992893.1 | CDP-diacylglycerol diphosphatase | - |
| NYF24_RS16395 (3482358) | 3482358..3482492 | - | 135 | WP_158149584.1 | hypothetical protein | - |
| NYF24_RS16400 (3482909) | 3482909..3483601 | + | 693 | WP_033769578.1 | LuxR family transcriptional regulator | - |
| NYF24_RS16405 (3483616) | 3483616..3484254 | - | 639 | WP_031593697.1 | acyl-homoserine-lactone synthase | - |
| NYF24_RS16410 (3485544) | 3485544..3485807 | - | 264 | WP_256849118.1 | hypothetical protein | - |
| NYF24_RS16415 (3485776) | 3485776..3485997 | - | 222 | WP_258995815.1 | DUF2778 domain-containing protein | - |
| NYF24_RS16420 (3486039) | 3486039..3486368 | - | 330 | WP_258992899.1 | endoribonuclease SymE | Toxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_0 | - | Antitoxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_0 | - | Antitoxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_0 | - | Antitoxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_0 | - | Antitoxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_1 | - | Antitoxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_1 | - | Antitoxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_1 | - | Antitoxin Detail |
| - (3486363) | 3486363..3486439 | + | 77 | NuclAT_1 | - | Antitoxin Detail |
| NYF24_RS16425 (3486892) | 3486892..3487215 | - | 324 | WP_039386786.1 | DNA-binding transcriptional regulator | - |
| NYF24_RS16430 (3487199) | 3487199..3487441 | - | 243 | Protein_3200 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NYF24_RS16435 (3487645) | 3487645..3488697 | + | 1053 | WP_258992903.1 | hypothetical protein | - |
| NYF24_RS16440 (3488691) | 3488691..3488966 | + | 276 | WP_033759756.1 | hypothetical protein | - |
| NYF24_RS16445 (3489151) | 3489151..3489384 | + | 234 | WP_258995816.1 | MarR family transcriptional regulator | - |
| NYF24_RS16450 (3489470) | 3489470..3490439 | - | 970 | Protein_3204 | IS3 family transposase ISKpn34 | Transposase |
| NYF24_RS16455 (3490594) | 3490594..3491553 | + | 960 | WP_033759703.1 | toll/interleukin-1 receptor domain-containing protein | - |
| NYF24_RS16460 (3491865) | 3491865..3494912 | - | 3048 | WP_258992910.1 | DEAD/DEAH box helicase family protein | - |
| NYF24_RS16465 (3494923) | 3494923..3497001 | - | 2079 | WP_258992912.1 | site-specific DNA-methyltransferase | - |
| NYF24_RS16470 (3496994) | 3496994..3499117 | - | 2124 | WP_258992914.1 | DUF262 domain-containing protein | - |
| NYF24_RS16475 (3499128) | 3499128..3499934 | - | 807 | WP_258992916.1 | DUF4391 domain-containing protein | - |
| NYF24_RS16480 (3499931) | 3499931..3503164 | - | 3234 | WP_258992918.1 | helicase-related protein | - |
| NYF24_RS16485 (3503720) | 3503720..3504921 | - | 1202 | Protein_3211 | tyrosine-type recombinase/integrase | - |
| NYF24_RS16495 (3505385) | 3505385..3506416 | - | 1032 | WP_258995818.1 | DUF1176 domain-containing protein | - |
| NYF24_RS16500 (3506566) | 3506566..3506952 | - | 387 | WP_258992919.1 | hypothetical protein | - |
| NYF24_RS16505 (3506982) | 3506982..3507443 | - | 462 | WP_258992920.1 | hypothetical protein | - |
| NYF24_RS16510 (3507819) | 3507819..3508832 | + | 1014 | WP_258992921.1 | HNH endonuclease domain-containing protein | - |
| NYF24_RS16515 (3508829) | 3508829..3509506 | + | 678 | WP_258992922.1 | class I SAM-dependent methyltransferase | - |
| NYF24_RS16520 (3509648) | 3509648..3510646 | - | 999 | WP_258992925.1 | YsnF/AvaK domain-containing protein | - |
| NYF24_RS16525 (3510663) | 3510663..3511064 | - | 402 | WP_010251609.1 | DUF2382 domain-containing protein | - |
| NYF24_RS16530 (3511608) | 3511608..3512117 | + | 510 | WP_010671770.1 | DUF2501 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|