MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 88973 bp
Accession: NZ_CP102944 Location: 5518957..5607929 Organism: Pseudomonas aeruginosa strain SCAID TCT1-2022 (325) Replicon: chromosome
Accession: NZ_CP102944 Location: 5518957..5607929 Organism: Pseudomonas aeruginosa strain SCAID TCT1-2022 (325) Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NW342_RS25875 (NW342_25875) | 5514419..5518726 | + | 4308 | WP_033990661.1 | two-partner secretion system exoprotein TpsA4 | - |
| NW342_RS25880 (NW342_25880) | 5519098..5519964 | + | 867 | WP_003120956.1 | ParA family protein | - |
| NW342_RS25885 (NW342_25885) | 5519966..5520703 | + | 738 | WP_022579603.1 | hypothetical protein | - |
| NW342_RS25890 (NW342_25890) | 5520700..5521197 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| NW342_RS25895 (NW342_25895) | 5521203..5521949 | + | 747 | WP_033989460.1 | hypothetical protein | - |
| NW342_RS25900 (NW342_25900) | 5521946..5522629 | + | 684 | WP_033989458.1 | Lar family restriction alleviation protein | - |
| NW342_RS25905 (NW342_25905) | 5522629..5523330 | + | 702 | WP_022579606.1 | DUF2786 domain-containing protein | - |
| NW342_RS25910 (NW342_25910) | 5523327..5524034 | + | 708 | WP_003122069.1 | HNH endonuclease signature motif containing protein | - |
| NW342_RS25915 (NW342_25915) | 5524018..5524236 | + | 219 | WP_003122068.1 | hypothetical protein | - |
| NW342_RS25920 (NW342_25920) | 5524233..5525576 | + | 1344 | WP_019486079.1 | replicative DNA helicase | - |
| NW342_RS25925 (NW342_25925) | 5526015..5526461 | - | 447 | WP_003117028.1 | hypothetical protein | - |
| NW342_RS25930 (NW342_25930) | 5526906..5527187 | - | 282 | WP_017002281.1 | hypothetical protein | - |
| NW342_RS25935 (NW342_25935) | 5527540..5528067 | + | 528 | WP_022579609.1 | hypothetical protein | - |
| NW342_RS25940 (NW342_25940) | 5528064..5528321 | + | 258 | WP_004352848.1 | hypothetical protein | - |
| NW342_RS25945 (NW342_25945) | 5528314..5528556 | + | 243 | WP_022579610.1 | hypothetical protein | - |
| NW342_RS25950 (NW342_25950) | 5528549..5528782 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| NW342_RS25955 (NW342_25955) | 5528782..5529804 | + | 1023 | WP_022579611.1 | nucleoid-associated protein YejK | - |
| NW342_RS25960 (NW342_25960) | 5529801..5530691 | + | 891 | WP_022579612.1 | DNA adenine methylase | - |
| NW342_RS25965 (NW342_25965) | 5530712..5530981 | + | 270 | WP_003448782.1 | Arc family DNA-binding protein | - |
| NW342_RS25970 (NW342_25970) | 5530978..5532711 | + | 1734 | WP_003448780.1 | ParB family protein | - |
| NW342_RS25975 (NW342_25975) | 5532739..5533494 | + | 756 | WP_003121580.1 | DUF2857 domain-containing protein | - |
| NW342_RS25980 (NW342_25980) | 5533497..5534822 | + | 1326 | WP_031675614.1 | STY4528 family pathogenicity island replication protein | - |
| NW342_RS25985 (NW342_25985) | 5534819..5537593 | + | 2775 | WP_239066656.1 | hypothetical protein | - |
| NW342_RS25990 (NW342_25990) | 5537859..5538587 | + | 729 | WP_003448749.1 | TIGR03761 family integrating conjugative element protein | - |
| NW342_RS25995 (NW342_25995) | 5538593..5539141 | + | 549 | WP_022579615.1 | DUF3158 family protein | - |
| NW342_RS26000 (NW342_26000) | 5539189..5540019 | + | 831 | WP_023108757.1 | Rha family transcriptional regulator | - |
| NW342_RS26005 (NW342_26005) | 5540049..5540537 | + | 489 | WP_022579618.1 | single-stranded DNA-binding protein | - |
| NW342_RS26010 (NW342_26010) | 5540687..5540998 | + | 312 | WP_022579619.1 | helix-turn-helix transcriptional regulator | - |
| NW342_RS26015 (NW342_26015) | 5541105..5541272 | + | 168 | WP_128729268.1 | CrpP family ICE-associated protein | - |
| NW342_RS26020 (NW342_26020) | 5541388..5543307 | + | 1920 | WP_022579620.1 | type I DNA topoisomerase | - |
| NW342_RS26025 (NW342_26025) | 5543321..5544067 | + | 747 | WP_022579621.1 | hypothetical protein | - |
| NW342_RS26030 (NW342_26030) | 5544381..5546276 | + | 1896 | WP_202551604.1 | hypothetical protein | - |
| NW342_RS26035 (NW342_26035) | 5546273..5548249 | + | 1977 | WP_022579622.1 | DEAD/DEAH box helicase | - |
| NW342_RS26040 (NW342_26040) | 5548388..5548723 | + | 336 | WP_022579623.1 | hypothetical protein | - |
| NW342_RS26045 (NW342_26045) | 5548806..5549096 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| NW342_RS26050 (NW342_26050) | 5549093..5549392 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NW342_RS26055 (NW342_26055) | 5549594..5550718 | + | 1125 | WP_023093672.1 | hypothetical protein | VF |
| NW342_RS26060 (NW342_26060) | 5550718..5552427 | + | 1710 | WP_023093673.1 | hypothetical protein | VF |
| NW342_RS26065 (NW342_26065) | 5552431..5553756 | + | 1326 | WP_022579625.1 | type 4b pilus protein PilO2 | - |
| NW342_RS26070 (NW342_26070) | 5553746..5554279 | + | 534 | WP_004352829.1 | type IV pilus biogenesis protein PilP | - |
| NW342_RS26075 (NW342_26075) | 5554288..5555868 | + | 1581 | WP_003134124.1 | hypothetical protein | VF |
| NW342_RS26080 (NW342_26080) | 5555868..5556947 | + | 1080 | WP_003109360.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| NW342_RS26085 (NW342_26085) | 5556969..5557499 | + | 531 | WP_003099765.1 | hypothetical protein | VF |
| NW342_RS26090 (NW342_26090) | 5557496..5558452 | + | 957 | WP_022579629.1 | ATPase, T2SS/T4P/T4SS family | - |
| NW342_RS26095 (NW342_26095) | 5558445..5559824 | + | 1380 | WP_022579630.1 | hypothetical protein | VF |
| NW342_RS26100 (NW342_26100) | 5559842..5560279 | + | 438 | WP_022579631.1 | hypothetical protein | VF |
| NW342_RS26105 (NW342_26105) | 5561280..5562278 | + | 999 | WP_022579633.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| NW342_RS26110 (NW342_26110) | 5562588..5563154 | + | 567 | WP_023110988.1 | hypothetical protein | - |
| NW342_RS26115 (NW342_26115) | 5563231..5563407 | + | 177 | WP_003149538.1 | hypothetical protein | - |
| NW342_RS26120 (NW342_26120) | 5563409..5563543 | + | 135 | WP_003099783.1 | hypothetical protein | - |
| NW342_RS26125 (NW342_26125) | 5563869..5564357 | + | 489 | WP_003448595.1 | STY4534 family ICE replication protein | - |
| NW342_RS26130 (NW342_26130) | 5564495..5564653 | + | 159 | WP_003121002.1 | hypothetical protein | - |
| NW342_RS26135 (NW342_26135) | 5564727..5564924 | + | 198 | WP_003448593.1 | hypothetical protein | - |
| NW342_RS26145 (NW342_26145) | 5566355..5567068 | + | 714 | WP_003121003.1 | hypothetical protein | - |
| NW342_RS26150 (NW342_26150) | 5567304..5567654 | + | 351 | WP_003099791.1 | hypothetical protein | - |
| NW342_RS26155 (NW342_26155) | 5567711..5568343 | + | 633 | WP_003099792.1 | DUF3275 family protein | - |
| NW342_RS26160 (NW342_26160) | 5568340..5568615 | + | 276 | WP_003099794.1 | hypothetical protein | - |
| NW342_RS26165 (NW342_26165) | 5568685..5569047 | + | 363 | WP_003099795.1 | hypothetical protein | - |
| NW342_RS26170 (NW342_26170) | 5569115..5569375 | + | 261 | WP_003099797.1 | hypothetical protein | - |
| NW342_RS26175 (NW342_26175) | 5569468..5570073 | + | 606 | WP_003099799.1 | hypothetical protein | - |
| NW342_RS26180 (NW342_26180) | 5570103..5571548 | + | 1446 | WP_003099801.1 | DUF6094 domain-containing protein | - |
| NW342_RS26185 (NW342_26185) | 5571653..5573035 | + | 1383 | Protein_5180 | SNF2-related protein | - |
| NW342_RS26190 (NW342_26190) | 5573230..5574033 | - | 804 | WP_011911830.1 | IS21 family transposase ISPst3 | Transposase |
| NW342_RS26195 (NW342_26195) | 5574026..5575525 | - | 1500 | WP_101516663.1 | IS21 family transposase ISPst3 | Transposase |
| NW342_RS26200 (NW342_26200) | 5575680..5576516 | + | 837 | WP_258383151.1 | helicase-related protein | - |
| NW342_RS26205 (NW342_26205) | 5576611..5577067 | + | 457 | Protein_5184 | IS3 family transposase | - |
| NW342_RS26210 (NW342_26210) | 5577246..5578457 | + | 1212 | WP_003456423.1 | three-Cys-motif partner protein TcmP | - |
| NW342_RS26215 (NW342_26215) | 5578690..5579433 | + | 744 | WP_003117069.1 | phage Gp37/Gp68 family protein | - |
| NW342_RS26220 (NW342_26220) | 5579451..5580785 | + | 1335 | WP_003117070.1 | three-Cys-motif partner protein TcmP | - |
| NW342_RS26225 (NW342_26225) | 5581237..5581935 | + | 699 | WP_023121525.1 | hypothetical protein | - |
| NW342_RS26230 (NW342_26230) | 5581946..5582701 | + | 756 | WP_003099814.1 | TIGR03759 family integrating conjugative element protein | - |
| NW342_RS26235 (NW342_26235) | 5582686..5583267 | + | 582 | WP_003117072.1 | hypothetical protein | VF |
| NW342_RS26240 (NW342_26240) | 5583264..5583764 | + | 501 | WP_003099819.1 | integrating conjugative element protein | - |
| NW342_RS26245 (NW342_26245) | 5583773..5584042 | + | 270 | WP_003099820.1 | hypothetical protein | - |
| NW342_RS26250 (NW342_26250) | 5584046..5585089 | + | 1044 | Protein_5193 | conjugative transfer system coupling protein TraD | - |
| NW342_RS26255 (NW342_26255) | 5585290..5586093 | - | 804 | WP_011911830.1 | IS21 family transposase ISPst3 | Transposase |
| NW342_RS26260 (NW342_26260) | 5586086..5587585 | - | 1500 | WP_101516663.1 | IS21 family transposase ISPst3 | Transposase |
| NW342_RS26265 (NW342_26265) | 5587700..5588896 | + | 1197 | Protein_5196 | TIGR03752 family integrating conjugative element protein | - |
| NW342_RS26270 (NW342_26270) | 5588874..5589317 | + | 444 | WP_003121022.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| NW342_RS26275 (NW342_26275) | 5589317..5592259 | + | 2943 | WP_033989541.1 | conjugative transfer ATPase | - |
| NW342_RS26280 (NW342_26280) | 5592256..5592540 | + | 285 | WP_003086159.1 | hypothetical protein | - |
| NW342_RS26285 (NW342_26285) | 5592537..5593196 | + | 660 | WP_022579649.1 | DsbA family protein | - |
| NW342_RS26290 (NW342_26290) | 5593193..5593411 | - | 219 | WP_003158150.1 | hypothetical protein | - |
| NW342_RS26295 (NW342_26295) | 5595550..5595981 | + | 432 | WP_003456706.1 | TIGR03757 family integrating conjugative element protein | - |
| NW342_RS26300 (NW342_26300) | 5595981..5596919 | + | 939 | WP_003456709.1 | TIGR03756 family integrating conjugative element protein | - |
| NW342_RS26305 (NW342_26305) | 5596937..5598325 | + | 1389 | WP_023108760.1 | integrating conjugative element protein | - |
| NW342_RS26310 (NW342_26310) | 5598325..5598669 | + | 345 | WP_003456714.1 | hypothetical protein | - |
| NW342_RS26315 (NW342_26315) | 5598666..5600201 | + | 1536 | WP_108720489.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NW342_RS26320 (NW342_26320) | 5600232..5600585 | - | 354 | WP_022580143.1 | hypothetical protein | - |
| NW342_RS26325 (NW342_26325) | 5600704..5600976 | + | 273 | WP_022580142.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| NW342_RS26330 (NW342_26330) | 5600980..5601339 | + | 360 | WP_012076884.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NW342_RS26335 (NW342_26335) | 5601349..5602266 | - | 918 | WP_023082681.1 | hypothetical protein | - |
| NW342_RS26340 (NW342_26340) | 5602292..5602531 | - | 240 | WP_023082682.1 | hypothetical protein | - |
| NW342_RS26345 (NW342_26345) | 5602915..5604165 | + | 1251 | WP_003119430.1 | IS256 family transposase ISRso7 | Transposase |
| NW342_RS26350 (NW342_26350) | 5604325..5606247 | + | 1923 | WP_022580137.1 | MobH family relaxase | - |
| NW342_RS26355 (NW342_26355) | 5606244..5607545 | + | 1302 | WP_003454526.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NW342_RS26375 (NW342_26375) | 5608364..5610928 | - | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| NW342_RS26380 (NW342_26380) | 5611084..5611812 | - | 729 | WP_033991129.1 | peptidoglycan editing factor PgeF | - |
| NW342_RS26385 (NW342_26385) | 5611809..5612771 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|