MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 146416 bp
Accession: NZ_CP102927 Location: 2332342..2478757 Organism: Vibrio cholerae strain N1252 Replicon: chromosome
Accession: NZ_CP102927 Location: 2332342..2478757 Organism: Vibrio cholerae strain N1252 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NW313_RS10500 | 2328148..2328633 | + | 486 | WP_001911251.1 | inosine/xanthosine triphosphatase | - |
| NW313_RS10505 | 2328711..2329022 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| NW313_RS10510 | 2329077..2331023 | - | 1947 | WP_000197615.1 | murein transglycosylase | - |
| NW313_RS10515 | 2331385..2333052 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| NW313_RS10520 | 2333223..2333594 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| NW313_RS10525 | 2333661..2334788 | - | 1128 | WP_000257629.1 | T-protein | VF |
| NW313_RS10530 | 2334801..2335874 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| NW313_RS10535 | 2336116..2337792 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| NW313_RS10540 | 2337802..2338515 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| NW313_RS10545 | 2338542..2339534 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| NW313_RS10550 | 2339640..2340752 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| NW313_RS10555 | 2340770..2341693 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| NW313_RS10560 | 2341717..2343513 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| NW313_RS10565 | 2343532..2343873 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| NW313_RS10570 | 2344126..2345610 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| NW313_RS10575 | 2345747..2346709 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| NW313_RS10580 | 2346744..2347178 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| NW313_RS10585 | 2347341..2347856 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| NW313_RS10590 | 2347872..2350721 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| NW313_RS10595 | 2350752..2351720 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| NW313_RS10600 | 2351789..2353351 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| NW313_RS10605 | 2353609..2353869 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| NW313_RS10610 | 2353938..2354225 | - | 288 | WP_000414513.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| NW313_RS10615 | 2354462..2355352 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| NW313_RS10620 | 2355747..2356895 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| NW313_RS10625 | 2356988..2357839 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| NW313_RS10630 | 2357849..2358664 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| NW313_RS10635 | 2358693..2359487 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| NW313_RS10640 | 2359497..2361743 | - | 2247 | WP_258265749.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| NW313_RS10645 | 2361746..2362264 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| NW313_RS10650 | 2362895..2363560 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| NW313_RS10655 | 2363777..2364811 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| NW313_RS10660 | 2364849..2365100 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| NW313_RS10665 | 2365678..2367012 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| NW313_RS10670 | 2367286..2368818 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| NW313_RS10680 | 2370117..2371430 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| NW313_RS10685 | 2371739..2372461 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| NW313_RS10690 | 2372549..2373820 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| NW313_RS10695 | 2373942..2375531 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| NW313_RS10700 | 2375788..2376435 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| NW313_RS10705 | 2376553..2376804 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| NW313_RS10710 | 2376860..2377729 | + | 870 | WP_001205850.1 | hypothetical protein | - |
| NW313_RS10715 | 2377716..2378378 | + | 663 | WP_001158521.1 | DUF6475 domain-containing protein | - |
| NW313_RS10720 | 2378365..2378913 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| NW313_RS10725 | 2378910..2379209 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| NW313_RS10730 | 2379206..2379739 | + | 534 | WP_000566755.1 | FlhC family transcriptional regulator | - |
| NW313_RS10735 | 2379797..2380228 | + | 432 | WP_000183214.1 | entry exclusion protein EexR | - |
| NW313_RS10740 | 2380261..2383830 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NW313_RS10745 | 2383834..2385222 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| NW313_RS10750 | 2385225..2386169 | - | 945 | WP_001260107.1 | conjugal transfer protein TraF | - |
| NW313_RS10755 | 2386426..2387385 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NW313_RS10760 | 2387673..2388146 | + | 474 | WP_000777554.1 | Dihydrofolate reductase type 1 | ARG |
| NW313_RS10765 | 2388281..2388676 | + | 396 | WP_000096366.1 | hypothetical protein | - |
| NW313_RS10770 | 2388874..2389284 | + | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| NW313_RS10775 | 2389355..2389717 | + | 363 | WP_000201475.1 | DUF1801 domain-containing protein | - |
| NW313_RS10780 | 2389817..2390518 | + | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| NW313_RS10785 | 2390515..2390898 | - | 384 | WP_223225475.1 | VOC family protein | - |
| NW313_RS10790 | 2391191..2391898 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| NW313_RS10795 | 2391988..2393061 | - | 1074 | WP_001207590.1 | primase-helicase zinc-binding domain-containing protein | - |
| NW313_RS10800 | 2393152..2393493 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| NW313_RS10805 | 2393493..2393990 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| NW313_RS10810 | 2394075..2395730 | - | 1656 | WP_001016320.1 | nitric oxide reductase activation protein NorD | - |
| NW313_RS10815 | 2395800..2396240 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| NW313_RS10820 | 2396302..2397255 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| NW313_RS10825 | 2397354..2398121 | - | 768 | WP_000970189.1 | hypothetical protein | - |
| NW313_RS10830 | 2398121..2399080 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| NW313_RS10835 | 2399290..2400306 | - | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| NW313_RS10840 | 2400367..2400510 | - | 144 | WP_000167277.1 | hypothetical protein | - |
| NW313_RS10845 | 2400592..2401410 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| NW313_RS10850 | 2401490..2401909 | - | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| NW313_RS10855 | 2401925..2402251 | - | 327 | WP_000455723.1 | hypothetical protein | - |
| NW313_RS10860 | 2402619..2403221 | + | 603 | WP_000035785.1 | hypothetical protein | - |
| NW313_RS10865 | 2403330..2404013 | + | 684 | WP_001082313.1 | endonuclease | - |
| NW313_RS10870 | 2404244..2405260 | + | 1017 | WP_001918293.1 | AAA family ATPase | - |
| NW313_RS10875 | 2405368..2406867 | + | 1500 | WP_001920874.1 | IS21 family transposase ISCte8 | Transposase |
| NW313_RS10880 | 2406857..2407612 | + | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| NW313_RS10885 | 2407743..2409308 | + | 1566 | WP_001918292.1 | hypothetical protein | - |
| NW313_RS10890 | 2409399..2413091 | - | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| NW313_RS10895 | 2413094..2414122 | - | 1029 | WP_000735886.1 | TraU family protein | - |
| NW313_RS10900 | 2414106..2415230 | - | 1125 | WP_001189235.1 | TrbC family F-type conjugative pilus assembly protein | - |
| NW313_RS10905 | 2415241..2415753 | - | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| NW313_RS10910 | 2415737..2416084 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| NW313_RS10915 | 2416077..2418476 | - | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| NW313_RS10920 | 2418476..2419168 | - | 693 | WP_001228926.1 | DsbC family protein | - |
| NW313_RS10925 | 2419300..2420238 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| NW313_RS10930 | 2420231..2421022 | - | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| NW313_RS10935 | 2421243..2421629 | - | 387 | WP_000180223.1 | TraA family conjugative transfer protein | - |
| NW313_RS10940 | 2421626..2422198 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NW313_RS10945 | 2422273..2423562 | - | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| NW313_RS10950 | 2423565..2424461 | - | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| NW313_RS10955 | 2424445..2425071 | - | 627 | WP_000667170.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| NW313_RS10960 | 2425068..2425349 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| NW313_RS10965 | 2425638..2426225 | + | 588 | WP_001167482.1 | hypothetical protein | - |
| NW313_RS10970 | 2426252..2426887 | - | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| NW313_RS10975 | 2426874..2427434 | - | 561 | WP_000546514.1 | hypothetical protein | - |
| NW313_RS10980 | 2427444..2429264 | - | 1821 | WP_000661888.1 | conjugative transfer system coupling protein TraD | - |
| NW313_RS10985 | 2429313..2431463 | - | 2151 | WP_000475916.1 | MobH family relaxase | - |
| NW313_RS10990 | 2431585..2432400 | - | 816 | WP_001125250.1 | abortive infection family protein | - |
| NW313_RS10995 | 2432435..2433205 | - | 771 | WP_000158025.1 | hypothetical protein | - |
| NW313_RS11000 | 2433232..2435283 | - | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| NW313_RS11005 | 2435322..2437625 | - | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| NW313_RS11010 | 2437638..2441378 | - | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| NW313_RS11015 | 2441383..2445072 | - | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| NW313_RS11020 | 2445085..2445633 | - | 549 | WP_001115853.1 | hypothetical protein | - |
| NW313_RS11025 | 2445617..2446417 | - | 801 | WP_000653856.1 | DUF1819 family protein | - |
| NW313_RS11030 | 2446435..2447355 | - | 921 | WP_000180270.1 | WYL domain-containing protein | - |
| NW313_RS11035 | 2447673..2447972 | - | 300 | WP_000284114.1 | hypothetical protein | - |
| NW313_RS11040 | 2448060..2448965 | - | 906 | WP_000196209.1 | 3'-5' exonuclease | - |
| NW313_RS11045 | 2449349..2449606 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| NW313_RS11050 | 2449605..2450054 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NW313_RS11055 | 2450062..2450295 | + | 234 | Protein_2151 | DNA polymerase V subunit UmuC | - |
| NW313_RS11060 | 2450484..2450987 | + | 504 | WP_000572562.1 | hypothetical protein | - |
| NW313_RS11065 | 2451045..2452256 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| NW313_RS11070 | 2452293..2453600 | - | 1308 | Protein_2154 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| NW313_RS11075 | 2454071..2454886 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| NW313_RS11080 | 2454947..2455750 | + | 804 | WP_001082316.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| NW313_RS11085 | 2455750..2456586 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| NW313_RS11090 | 2456693..2457097 | - | 405 | Protein_2158 | IS91 family transposase ISPps1 | Transposase |
| NW313_RS11095 | 2457209..2457514 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| NW313_RS11100 | 2457542..2458756 | - | 1215 | WP_000214119.1 | Bicyclomycin resistance protein | ARG |
| NW313_RS11105 | 2458973..2459857 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| NW313_RS11110 | 2459888..2461381 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| NW313_RS11115 | 2461493..2461684 | - | 192 | Protein_2163 | hypothetical protein | - |
| NW313_RS11120 | 2461799..2464777 | - | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| NW313_RS11125 | 2464891..2465484 | - | 594 | WP_000107352.1 | Tn3 family transposase TnpA_IS3000 | Transposase |
| NW313_RS11130 | 2465768..2466940 | + | 1173 | WP_001142610.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| NW313_RS11135 | 2466951..2467394 | - | 444 | WP_000348524.1 | conjugative transfer protein MobI(A/C) | - |
| NW313_RS11140 | 2467859..2468833 | + | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| NW313_RS11145 | 2468836..2469105 | + | 270 | WP_001995600.1 | hypothetical protein | - |
| NW313_RS11150 | 2469107..2470348 | + | 1242 | WP_001218618.1 | Prophage integrase IntS ; Integrase | Integrase |
| NW313_RS11155 | 2470478..2472496 | - | 2019 | WP_000211147.1 | ATP-binding protein | - |
| NW313_RS11160 | 2472642..2472830 | - | 189 | WP_000127615.1 | hypothetical protein | - |
| NW313_RS11165 | 2473571..2475628 | + | 2058 | WP_000160066.1 | hypothetical protein | VF |
| NW313_RS11170 | 2475617..2476066 | - | 450 | WP_000214238.1 | [Ribosomal protein S18]-alanine N-acetyltransferase | VF |
| NW313_RS11175 | 2476063..2476470 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| NW313_RS11180 | 2476581..2477084 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| NW313_RS11185 | 2477068..2477595 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| NW313_RS11190 | 2477828..2479882 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| NW313_RS11195 | 2479990..2481003 | + | 1014 | WP_000421327.1 | peptidase U32 family protein | - |
| NW313_RS11200 | 2481015..2481893 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| NW313_RS11205 | 2481946..2483283 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| NW313_RS11210 | 2483330..2483737 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|