MGE detailed information
MGE type: Genomic_island MGE length: 40951 bp
Accession: NZ_CP102927 Location: 2173199..2214149 Organism: Vibrio cholerae strain N1252 Replicon: chromosome
Accession: NZ_CP102927 Location: 2173199..2214149 Organism: Vibrio cholerae strain N1252 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NW313_RS09830 | 2168463..2173025 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| NW313_RS09835 | 2173199..2173846 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| NW313_RS09840 | 2173849..2174757 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| NW313_RS09845 | 2174766..2175203 | - | 438 | WP_001899524.1 | RDD family protein | - |
| NW313_RS09850 | 2175255..2176023 | - | 769 | Protein_1915 | accessory colonization factor AcfC | - |
| NW313_RS09855 | 2176029..2177909 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| NW313_RS09860 | 2177916..2178677 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| NW313_RS09865 | 2178677..2179507 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| NW313_RS09870 | 2179714..2180730 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| NW313_RS09875 | 2180740..2181762 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| NW313_RS09880 | 2181737..2183248 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| NW313_RS09885 | 2183238..2183696 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| NW313_RS09890 | 2183712..2184548 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| NW313_RS09895 | 2184536..2184991 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| NW313_RS09900 | 2184984..2186453 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| NW313_RS09905 | 2186456..2186908 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| NW313_RS09910 | 2186908..2188200 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| NW313_RS09915 | 2188280..2188954 | - | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| NW313_RS09920 | 2189498..2189908 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| NW313_RS09925 | 2189893..2190558 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| NW313_RS09930 | 2191000..2192862 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| NW313_RS09935 | 2193138..2193632 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| NW313_RS09940 | 2193742..2194680 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| NW313_RS09945 | 2194677..2199278 | - | 4602 | WP_000482254.1 | membrane protein | - |
| NW313_RS09950 | 2199391..2202432 | - | 3042 | WP_001880619.1 | M66 family metalloprotease | - |
| NW313_RS09955 | 2202612..2204132 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase family protein | - |
| NW313_RS09960 | 2204474..2205154 | + | 681 | Protein_1937 | IS5 family transposase | - |
| NW313_RS09965 | 2205180..2206157 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| NW313_RS09970 | 2206761..2208122 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| NW313_RS09975 | 2208119..2208586 | + | 468 | WP_000804849.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| NW313_RS09980 | 2209014..2209592 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| NW313_RS09985 | 2209596..2212532 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| NW313_RS09990 | 2212602..2213306 | + | 705 | WP_001880605.1 | nuclease-related domain-containing protein | - |
| NW313_RS09995 | 2213640..2214149 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| NW313_RS10000 | 2214347..2216026 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| NW313_RS10005 | 2216249..2216932 | + | 684 | WP_000841479.1 | VC0807 family protein | - |
| NW313_RS10010 | 2217000..2218616 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|