MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 38738 bp
Accession: NZ_CP102749 Location: 1837123..1875860 Organism: Pectobacterium parvum strain YT22221 Replicon: chromosome
Accession: NZ_CP102749 Location: 1837123..1875860 Organism: Pectobacterium parvum strain YT22221 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NV347_RS08080 (NV347_08080) | 1833588..1833815 | + | 228 | WP_039488024.1 | acyl carrier protein | - |
| NV347_RS08085 (NV347_08085) | 1833816..1834892 | + | 1077 | WP_052012127.1 | 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein | - |
| NV347_RS08090 (NV347_08090) | 1834886..1835377 | + | 492 | WP_039488023.1 | DUF2165 family protein | - |
| NV347_RS08095 (NV347_08095) | 1835603..1835737 | - | 135 | Protein_1574 | IS3 family transposase | - |
| NV347_RS08100 (NV347_08100) | 1835812..1836887 | + | 1076 | WP_258210355.1 | IS3 family transposase | - |
| NV347_RS08105 (NV347_08105) | 1837509..1838645 | + | 1137 | WP_039504519.1 | MBL fold metallo-hydrolase | - |
| NV347_RS08110 (NV347_08110) | 1838642..1840087 | + | 1446 | WP_039504524.1 | DUF1837 domain-containing protein | - |
| NV347_RS08115 (NV347_08115) | 1840084..1842279 | + | 2196 | WP_052326017.1 | DEAD/DEAH box helicase | - |
| NV347_RS08120 (NV347_08120) | 1842292..1843239 | + | 948 | WP_039504525.1 | hypothetical protein | - |
| NV347_RS08125 (NV347_08125) | 1843309..1843812 | + | 504 | WP_131547303.1 | hypothetical protein | - |
| NV347_RS08130 (NV347_08130) | 1844333..1845277 | + | 945 | WP_039504528.1 | zincin-like metallopeptidase domain-containing protein | - |
| NV347_RS08135 (NV347_08135) | 1845597..1845833 | + | 237 | WP_012769207.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| NV347_RS08140 (NV347_08140) | 1845836..1846150 | + | 315 | WP_039504530.1 | CcdB family protein | Toxin Detail |
| NV347_RS08145 (NV347_08145) | 1846543..1847547 | - | 1005 | WP_039504532.1 | DUF4238 domain-containing protein | - |
| NV347_RS08150 (NV347_08150) | 1847650..1848636 | - | 987 | WP_052326018.1 | DUF2971 domain-containing protein | - |
| NV347_RS08155 (NV347_08155) | 1848906..1849652 | - | 747 | WP_039504534.1 | MobC family replication-relaxation protein | - |
| NV347_RS08160 (NV347_08160) | 1849661..1851523 | - | 1863 | WP_039504536.1 | type IV secretory system conjugative DNA transfer family protein | - |
| NV347_RS08165 (NV347_08165) | 1852251..1852553 | - | 303 | WP_039504537.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| NV347_RS08170 (NV347_08170) | 1852597..1853613 | - | 1017 | WP_039504539.1 | Type IV secretion system protein VirB11 | VF |
| NV347_RS08175 (NV347_08175) | 1853603..1854835 | - | 1233 | WP_258210356.1 | hypothetical protein | VF |
| NV347_RS08180 (NV347_08180) | 1854832..1855722 | - | 891 | WP_258210357.1 | P-type conjugative transfer protein VirB9 | - |
| NV347_RS08185 (NV347_08185) | 1855722..1856405 | - | 684 | WP_039487530.1 | type IV secretion system protein | - |
| NV347_RS08190 (NV347_08190) | 1856398..1856538 | - | 141 | WP_039487528.1 | hypothetical protein | - |
| NV347_RS08195 (NV347_08195) | 1856626..1857666 | - | 1041 | WP_258210358.1 | type IV secretion system protein | - |
| NV347_RS08200 (NV347_08200) | 1857679..1857903 | - | 225 | WP_075278047.1 | EexN family lipoprotein | - |
| NV347_RS08205 (NV347_08205) | 1857914..1858630 | - | 717 | WP_258210359.1 | type IV secretion system protein | - |
| NV347_RS08210 (NV347_08210) | 1858654..1861401 | - | 2748 | WP_258210360.1 | Type IV secretion system protein virB4 | VF |
| NV347_RS08215 (NV347_08215) | 1861411..1861692 | - | 282 | WP_258210361.1 | hypothetical protein | VF |
| NV347_RS08220 (NV347_08220) | 1861689..1862354 | - | 666 | WP_258210362.1 | hypothetical protein | VF |
| NV347_RS08225 (NV347_08225) | 1862432..1862653 | - | 222 | WP_258210363.1 | hypothetical protein | - |
| NV347_RS08230 (NV347_08230) | 1863288..1864325 | + | 1038 | WP_258210364.1 | hypothetical protein | - |
| NV347_RS08235 (NV347_08235) | 1864616..1868395 | - | 3780 | WP_258210365.1 | hypothetical protein | - |
| NV347_RS08240 (NV347_08240) | 1868760..1870274 | + | 1515 | WP_258210366.1 | HNH endonuclease | - |
| NV347_RS08245 (NV347_08245) | 1870566..1870775 | - | 210 | WP_039513753.1 | TraR/DksA family transcriptional regulator | - |
| NV347_RS08250 (NV347_08250) | 1870765..1871349 | - | 585 | WP_258210367.1 | DUF2857 domain-containing protein | - |
| NV347_RS08255 (NV347_08255) | 1871366..1871560 | - | 195 | WP_161545735.1 | AlpA family transcriptional regulator | - |
| NV347_RS08260 (NV347_08260) | 1871714..1872628 | - | 915 | WP_258210368.1 | hypothetical protein | - |
| NV347_RS08265 (NV347_08265) | 1873044..1873316 | - | 273 | WP_014699383.1 | helix-turn-helix transcriptional regulator | - |
| NV347_RS08270 (NV347_08270) | 1873463..1873777 | + | 315 | WP_075278056.1 | helix-turn-helix transcriptional regulator | - |
| NV347_RS08275 (NV347_08275) | 1873963..1874277 | + | 315 | WP_039347347.1 | helix-turn-helix transcriptional regulator | - |
| NV347_RS08280 (NV347_08280) | 1874412..1875683 | - | 1272 | WP_258210369.1 | Prophage integrase IntA ; Integrase | Integrase |
| NV347_RS08290 (NV347_08290) | 1876031..1876828 | - | 798 | WP_039480098.1 | DgsA anti-repressor MtfA | - |
| NV347_RS08300 (NV347_08300) | 1878108..1878506 | - | 399 | WP_039480102.1 | H-NS family nucleoid-associated regulatory protein | - |
| NV347_RS08305 (NV347_08305) | 1879033..1879200 | + | 168 | WP_039480104.1 | YqaE/Pmp3 family membrane protein | - |
| NV347_RS08310 (NV347_08310) | 1879282..1880757 | - | 1476 | WP_039513801.1 | sensor domain-containing diguanylate cyclase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|