MGE detailed information
MGE type: Conjugative plasmid MGE length: 67067 bp
Accession: NZ_CP102696 Location: 1..67067 Organism: Escherichia coli strain GN4554 Replicon: plasmid pGN4554-2
Accession: NZ_CP102696 Location: 1..67067 Organism: Escherichia coli strain GN4554 Replicon: plasmid pGN4554-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NV952_RS23360 (1) | 1..858 | + | 858 | WP_012817826.1 | incFII family plasmid replication initiator RepA | - |
| NV952_RS23365 (1774) | 1774..2043 | + | 270 | WP_171935525.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| NV952_RS23370 (2043) | 2043..2321 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| NV952_RS23375 (2618) | 2618..3817 | - | 1200 | WP_000948429.1 | IS91 family transposase | - |
| NV952_RS23380 (3827) | 3827..4015 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| NV952_RS23385 (4454) | 4454..5674 | + | 1221 | WP_072664738.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| NV952_RS23390 (5667) | 5667..9584 | + | 3918 | WP_275630599.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| NV952_RS23395 (10009) | 10009..10404 | - | 396 | WP_000445937.1 | plasmid partitioning/stability family protein | - |
| NV952_RS23400 (10404) | 10404..11363 | - | 960 | WP_000921959.1 | plasmid segregation protein ParM | - |
| NV952_RS23405 (11801) | 11801..12703 | + | 903 | WP_077628556.1 | DUF1281 domain-containing protein | - |
| NV952_RS23410 (12707) | 12707..13011 | + | 305 | Protein_10 | hypothetical protein | - |
| NV952_RS23415 (13087) | 13087..13770 | + | 684 | WP_275630600.1 | DNA methylase | - |
| NV952_RS23420 (13771) | 13771..13992 | + | 222 | WP_001104882.1 | hypothetical protein | - |
| NV952_RS23425 (13973) | 13973..14440 | + | 468 | WP_224543503.1 | DUF1380 family protein | - |
| NV952_RS23430 (14485) | 14485..15255 | + | 771 | WP_001006228.1 | hypothetical protein | - |
| NV952_RS23435 (15672) | 15672..16097 | + | 426 | WP_001198941.1 | antirestriction protein | - |
| NV952_RS23440 (16144) | 16144..16562 | + | 419 | Protein_16 | hypothetical protein | - |
| NV952_RS23445 (16562) | 16562..16753 | + | 192 | WP_001027491.1 | hypothetical protein | - |
| NV952_RS23450 (17118) | 17118..17269 | - | 152 | Protein_18 | hypothetical protein | - |
| NV952_RS23455 (17783) | 17783..18013 | + | 231 | WP_000218655.1 | hypothetical protein | - |
| NV952_RS23460 (18065) | 18065..19426 | + | 1362 | WP_032214165.1 | DUF3560 domain-containing protein | - |
| NV952_RS23465 (19474) | 19474..20037 | + | 564 | WP_059274439.1 | class I SAM-dependent methyltransferase | - |
| NV952_RS23470 (20034) | 20034..20279 | + | 246 | WP_235588471.1 | hypothetical protein | - |
| NV952_RS23475 (20189) | 20189..20449 | + | 261 | WP_072250151.1 | hypothetical protein | - |
| NV952_RS23480 (20921) | 20921..21469 | + | 549 | WP_000290809.1 | single-stranded DNA-binding protein | - |
| NV952_RS23485 (21527) | 21527..21760 | + | 234 | WP_000006011.1 | DUF905 family protein | - |
| NV952_RS23490 (21824) | 21824..23782 | + | 1959 | WP_100039124.1 | ParB/RepB/Spo0J family partition protein | - |
| NV952_RS23495 (23837) | 23837..24271 | + | 435 | WP_032217500.1 | conjugation system SOS inhibitor PsiB | - |
| NV952_RS23500 (24268) | 24268..25030 | + | 763 | Protein_28 | plasmid SOS inhibition protein A | - |
| NV952_RS23505 (24999) | 24999..25187 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - (25156) | 25156..25221 | + | 66 | NuclAT_1 | - | - |
| - (24999) | 24999..25223 | + | 225 | NuclAT_0 | - | - |
| - (24999) | 24999..25223 | + | 225 | NuclAT_0 | - | - |
| - (24999) | 24999..25223 | + | 225 | NuclAT_0 | - | - |
| - (24999) | 24999..25223 | + | 225 | NuclAT_0 | - | - |
| - (24999) | 24999..25223 | - | 225 | NuclAT_0 | - | - |
| NV952_RS23510 (25209) | 25209..25358 | + | 150 | Protein_30 | plasmid maintenance protein Mok | - |
| NV952_RS23515 (25300) | 25300..25425 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NV952_RS23520 (25645) | 25645..25875 | + | 231 | WP_001426396.1 | hypothetical protein | - |
| NV952_RS23525 (25873) | 25873..26046 | - | 174 | Protein_33 | hypothetical protein | - |
| NV952_RS23530 (26116) | 26116..26322 | + | 207 | WP_000547971.1 | hypothetical protein | - |
| NV952_RS23535 (26347) | 26347..26634 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| NV952_RS23540 (26752) | 26752..27573 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| NV952_RS23545 (27870) | 27870..28517 | - | 648 | WP_000601040.1 | transglycosylase SLT domain-containing protein | - |
| NV952_RS23550 (28793) | 28793..29176 | + | 384 | WP_001151530.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NV952_RS23555 (29368) | 29368..30015 | + | 648 | WP_000338011.1 | transcriptional regulator TraJ family protein | - |
| NV952_RS23560 (30135) | 30135..30362 | + | 228 | WP_000589558.1 | conjugal transfer relaxosome protein TraY | - |
| NV952_RS23565 (30396) | 30396..30821 | + | 426 | WP_130560641.1 | type IV conjugative transfer system pilin TraA | - |
| NV952_RS23570 (30836) | 30836..31147 | + | 312 | WP_000012125.1 | type IV conjugative transfer system protein TraL | - |
| NV952_RS23575 (31169) | 31169..31735 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| NV952_RS23580 (31722) | 31722..32450 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| NV952_RS23585 (32450) | 32450..33877 | + | 1428 | WP_000146635.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NV952_RS23590 (33867) | 33867..34454 | + | 588 | WP_000002773.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NV952_RS23595 (34441) | 34441..34761 | + | 321 | WP_001057290.1 | conjugal transfer protein TrbD | - |
| NV952_RS23600 (34754) | 34754..35005 | + | 252 | WP_001038338.1 | conjugal transfer protein TrbG | - |
| NV952_RS23605 (35002) | 35002..35517 | + | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NV952_RS23610 (35652) | 35652..35873 | + | 222 | WP_001278693.1 | conjugal transfer protein TraR | - |
| NV952_RS23615 (35866) | 35866..36339 | + | 474 | WP_000549600.1 | hypothetical protein | - |
| NV952_RS23620 (36419) | 36419..36637 | + | 219 | Protein_52 | hypothetical protein | - |
| NV952_RS23625 (36665) | 36665..37027 | + | 363 | WP_000836688.1 | hypothetical protein | - |
| NV952_RS23630 (37154) | 37154..39784 | + | 2631 | WP_063501950.1 | type IV secretion system protein TraC | - |
| NV952_RS23635 (39781) | 39781..40167 | + | 387 | WP_000214096.1 | type-F conjugative transfer system protein TrbI | - |
| NV952_RS23640 (40164) | 40164..40796 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| NV952_RS23645 (40793) | 40793..41785 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| NV952_RS23650 (41794) | 41794..42432 | + | 639 | WP_000777701.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NV952_RS23655 (42429) | 42429..42800 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| NV952_RS23660 (42826) | 42826..43248 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| NV952_RS23665 (43245) | 43245..45095 | + | 1851 | WP_275630595.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NV952_RS23670 (45122) | 45122..45379 | + | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| NV952_RS23675 (45372) | 45372..46115 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NV952_RS23680 (46276) | 46276..46512 | + | 237 | WP_000270010.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NV952_RS23685 (46499) | 46499..47044 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NV952_RS23690 (47034) | 47034..47348 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| NV952_RS23695 (47302) | 47302..47694 | + | 393 | WP_100039121.1 | F-type conjugal transfer protein TrbF | - |
| NV952_RS23700 (47681) | 47681..49054 | + | 1374 | WP_265928828.1 | conjugal transfer pilus assembly protein TraH | - |
| NV952_RS23705 (49051) | 49051..51870 | + | 2820 | WP_203291457.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NV952_RS23710 (51889) | 51889..52386 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| NV952_RS23715 (52419) | 52419..53150 | + | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| NV952_RS23720 (53353) | 53353..54090 | + | 738 | WP_275630596.1 | hypothetical protein | - |
| NV952_RS23725 (54141) | 54141..56348 | + | 2208 | WP_100036095.1 | type IV conjugative transfer system coupling protein TraD | - |
| NV952_RS23730 (56348) | 56348..61618 | + | 5271 | WP_275630597.1 | conjugative transfer relaxase/helicase TraI | - |
| NV952_RS23735 (61638) | 61638..62384 | + | 747 | WP_275630598.1 | conjugal transfer pilus acetylase TraX | - |
| NV952_RS23740 (62439) | 62439..62999 | + | 561 | WP_000139351.1 | fertility inhibition protein FinO | - |
| NV952_RS23745 (63131) | 63131..63343 | + | 213 | WP_001385659.1 | hypothetical protein | - |
| NV952_RS23750 (63630) | 63630..64307 | + | 678 | WP_000392235.1 | PIN domain-containing protein | - |
| NV952_RS23755 (64627) | 64627..65200 | + | 574 | Protein_79 | DUF2726 domain-containing protein | - |
| NV952_RS23760 (65355) | 65355..65819 | + | 465 | WP_000872610.1 | hypothetical protein | - |
| NV952_RS23765 (66076) | 66076..66225 | + | 150 | WP_001378818.1 | Hok/Gef family protein | - |
| NV952_RS23770 (66509) | 66509..66757 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|