MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 148600 bp
Accession: NZ_CP102668 Location: 1..148600 Organism: Sphingobium sp. JS3065 Replicon: plasmid pNIN3
Accession: NZ_CP102668 Location: 1..148600 Organism: Sphingobium sp. JS3065 Replicon: plasmid pNIN3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUH86_RS24025 (NUH86_24030) | 259..996 | - | 738 | WP_267253321.1 | 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase | VF |
| NUH86_RS24030 (NUH86_24035) | 1229..2767 | + | 1539 | WP_267253255.1 | long-chain-fatty-acid--CoA ligase | - |
| NUH86_RS24035 (NUH86_24040) | 2905..3297 | + | 393 | WP_267253256.1 | phosphotransferase | - |
| NUH86_RS24040 (NUH86_24045) | 3596..4822 | - | 1227 | Protein_3 | acyl-CoA dehydrogenase family protein | - |
| NUH86_RS24045 (NUH86_24050) | 4881..5861 | - | 981 | WP_267253257.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| NUH86_RS24050 (NUH86_24055) | 6060..7319 | + | 1260 | WP_267253258.1 | acetyl-CoA C-acetyltransferase | - |
| NUH86_RS24055 (NUH86_24060) | 7351..8136 | + | 786 | WP_267253259.1 | putative oxidoreductase | VF |
| NUH86_RS24060 (NUH86_24065) | 8139..9305 | + | 1167 | WP_267253260.1 | Acyl-CoA dehydrogenase | VF |
| NUH86_RS24065 (NUH86_24070) | 9308..10183 | + | 876 | WP_267253261.1 | crotonase/enoyl-CoA hydratase family protein | - |
| NUH86_RS24070 (NUH86_24075) | 10250..11242 | + | 993 | WP_267253311.1 | nitronate monooxygenase | - |
| NUH86_RS24075 (NUH86_24080) | 11242..12462 | + | 1221 | WP_267253262.1 | acyl-CoA dehydrogenase family protein | - |
| NUH86_RS24080 (NUH86_24085) | 12528..12812 | + | 285 | WP_267253263.1 | putative quinol monooxygenase | - |
| NUH86_RS24085 (NUH86_24090) | 12924..13703 | + | 780 | WP_267253264.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| NUH86_RS24090 (NUH86_24095) | 13769..14446 | + | 678 | WP_267253265.1 | nitroreductase | - |
| NUH86_RS24095 (NUH86_24100) | 14488..15768 | - | 1281 | WP_267253266.1 | MFS transporter | - |
| NUH86_RS24100 (NUH86_24105) | 15815..16603 | - | 789 | WP_267253267.1 | enoyl-CoA hydratase-related protein | - |
| NUH86_RS24105 (NUH86_24110) | 16620..17780 | - | 1161 | WP_267253268.1 | acyl-CoA dehydrogenase family protein | - |
| NUH86_RS24110 (NUH86_24115) | 17847..18947 | - | 1101 | WP_267253269.1 | CaiB/BaiF CoA-transferase family protein | - |
| NUH86_RS24115 (NUH86_24120) | 18981..19691 | - | 711 | WP_267253270.1 | nitroreductase | - |
| NUH86_RS24120 (NUH86_24125) | 19688..20773 | - | 1086 | WP_267253271.1 | Gfo/Idh/MocA family oxidoreductase | - |
| NUH86_RS24125 (NUH86_24130) | 20818..21576 | - | 759 | WP_267253312.1 | Dihydroanticapsin 7-dehydrogenase | VF |
| NUH86_RS24130 (NUH86_24135) | 21796..23058 | + | 1263 | WP_267253272.1 | amidohydrolase family protein | - |
| NUH86_RS24135 (NUH86_24140) | 23115..23891 | + | 777 | WP_267253273.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| NUH86_RS24140 (NUH86_24145) | 24011..24622 | + | 612 | WP_267253274.1 | carboxymuconolactone decarboxylase family protein | - |
| NUH86_RS24145 (NUH86_24150) | 24622..26253 | + | 1632 | WP_267253275.1 | AMP-binding protein | - |
| NUH86_RS24150 (NUH86_24155) | 26342..27379 | + | 1038 | WP_267253276.1 | DUF2889 domain-containing protein | - |
| NUH86_RS24155 (NUH86_24160) | 27388..28164 | + | 777 | WP_267253277.1 | enoyl-CoA hydratase-related protein | - |
| NUH86_RS24160 (NUH86_24165) | 28240..30300 | + | 2061 | WP_267253313.1 | 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein | - |
| NUH86_RS24165 (NUH86_24170) | 30324..31499 | + | 1176 | WP_267253278.1 | acetyl-CoA C-acetyltransferase | - |
| NUH86_RS24170 (NUH86_24175) | 31562..32695 | + | 1134 | WP_267253279.1 | acyl-CoA dehydrogenase family protein | - |
| NUH86_RS24175 (NUH86_24180) | 32794..33447 | + | 654 | WP_267253280.1 | TetR family transcriptional regulator | - |
| NUH86_RS24180 (NUH86_24185) | 33643..34611 | + | 969 | WP_267253314.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| NUH86_RS24185 (NUH86_24190) | 34747..37167 | + | 2421 | WP_267253281.1 | TonB-dependent receptor | - |
| NUH86_RS24190 (NUH86_24195) | 37299..39419 | + | 2121 | WP_267253282.1 | molybdopterin-dependent oxidoreductase | - |
| NUH86_RS24195 (NUH86_24200) | 39503..40054 | + | 552 | WP_267253283.1 | NADPH-dependent FMN reductase | - |
| NUH86_RS24200 (NUH86_24205) | 40095..42422 | + | 2328 | WP_267253284.1 | Pesticin receptor | VF |
| NUH86_RS24205 (NUH86_24210) | 42475..42618 | + | 144 | Protein_36 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| NUH86_RS24210 (NUH86_24215) | 42609..42863 | + | 255 | Protein_37 | succinate--CoA ligase subunit beta | - |
| NUH86_RS24215 (NUH86_24220) | 42860..43564 | + | 705 | Protein_38 | succinate--CoA ligase subunit alpha | - |
| NUH86_RS24220 (NUH86_24225) | 43659..44921 | + | 1263 | WP_067739295.1 | IS21 family transposase ISMex13 | Transposase |
| NUH86_RS24225 (NUH86_24230) | 44918..45778 | + | 861 | WP_067739292.1 | IS21 family transposase ISMex13 | Transposase |
| NUH86_RS24230 (NUH86_24235) | 45853..46095 | + | 243 | Protein_41 | succinate--CoA ligase subunit alpha | - |
| NUH86_RS24235 (NUH86_24240) | 46257..46706 | - | 450 | WP_267253315.1 | SMP-30/gluconolactonase/LRE family protein | - |
| NUH86_RS24240 (NUH86_24245) | 46941..48041 | - | 1101 | WP_267253285.1 | NADH:flavin oxidoreductase | - |
| NUH86_RS24245 (NUH86_24250) | 48183..48950 | - | 768 | WP_267253286.1 | Dihydroanticapsin 7-dehydrogenase | VF |
| NUH86_RS24250 (NUH86_24255) | 49220..50278 | - | 1059 | WP_267253287.1 | IS110 family transposase ISShwo5 | Transposase |
| NUH86_RS24255 (NUH86_24260) | 50847..50981 | - | 135 | WP_267253288.1 | hypothetical protein | - |
| NUH86_RS24260 (NUH86_24265) | 51015..52955 | + | 1941 | WP_267253289.1 | molybdopterin-dependent oxidoreductase | - |
| NUH86_RS24265 (NUH86_24270) | 53428..54117 | + | 690 | Protein_48 | IS110 family transposase ISMtsp6 | Transposase |
| NUH86_RS24270 (NUH86_24275) | 54139..54972 | - | 834 | WP_267249579.1 | IS5 family transposase IS1031D | Transposase |
| NUH86_RS24275 (NUH86_24280) | 55049..55471 | + | 423 | Protein_50 | IS110 family transposase ISMtsp6 | Transposase |
| NUH86_RS24280 (NUH86_24285) | 55747..55935 | - | 189 | WP_267253290.1 | transposase domain-containing protein | - |
| NUH86_RS24285 (NUH86_24290) | 55866..56150 | + | 285 | WP_267253291.1 | S-4TM family putative pore-forming effector | - |
| NUH86_RS24290 (NUH86_24295) | 56193..56759 | - | 567 | WP_267253292.1 | hypothetical protein | - |
| NUH86_RS24295 (NUH86_24300) | 56981..57742 | + | 762 | WP_267253293.1 | Transcriptional activator protein LuxR | VF |
| NUH86_RS24300 (NUH86_24305) | 57759..58502 | + | 744 | WP_267253294.1 | Transcriptional activator protein LuxR | VF |
| NUH86_RS24305 (NUH86_24310) | 58575..59180 | + | 606 | WP_267253295.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| NUH86_RS24310 (NUH86_24315) | 59191..60135 | + | 945 | WP_267253296.1 | phytanoyl-CoA dioxygenase family protein | - |
| NUH86_RS24315 (NUH86_24320) | 60186..60527 | + | 342 | WP_267253297.1 | hypothetical protein | - |
| NUH86_RS24320 (NUH86_24325) | 60524..61192 | + | 669 | WP_267253298.1 | Type IV secretion system protein virB1 | VF |
| NUH86_RS24325 (NUH86_24330) | 61189..61527 | + | 339 | WP_125723801.1 | TrbC/VirB2 family protein | - |
| NUH86_RS24330 (NUH86_24335) | 61524..61874 | + | 351 | WP_267253299.1 | Type IV secretion system protein virB3 | VF |
| NUH86_RS24335 (NUH86_24340) | 61867..64278 | + | 2412 | WP_267253300.1 | Type IV secretion system protein virB4 | VF |
| NUH86_RS24340 (NUH86_24345) | 64282..64995 | + | 714 | WP_267253301.1 | type IV secretion system protein | - |
| NUH86_RS24345 (NUH86_24350) | 65227..66171 | + | 945 | WP_267253302.1 | type IV secretion system protein | - |
| NUH86_RS24350 (NUH86_24355) | 66506..67204 | + | 699 | WP_267253303.1 | Type IV secretion system protein virB8 | VF |
| NUH86_RS24355 (NUH86_24360) | 67201..68058 | + | 858 | WP_267253304.1 | Type IV secretion system protein virB9 | VF |
| NUH86_RS24360 (NUH86_24365) | 68062..69285 | + | 1224 | WP_267253305.1 | Type IV secretion system protein virB10 | VF |
| NUH86_RS24365 (NUH86_24370) | 69289..70293 | + | 1005 | WP_267253306.1 | Type IV secretion system protein VirB11 | VF |
| NUH86_RS24370 (NUH86_24375) | 70277..72238 | + | 1962 | WP_267253307.1 | Protein VirD4 | VF |
| NUH86_RS24375 (NUH86_24380) | 72228..73091 | + | 864 | WP_267253308.1 | DNA transfer protein | - |
| NUH86_RS24380 (NUH86_24385) | 73137..73829 | + | 693 | WP_267253309.1 | HEPN domain-containing protein | - |
| NUH86_RS24385 (NUH86_24390) | 73833..74666 | + | 834 | WP_267253310.1 | DUF3883 domain-containing protein | - |
| NUH86_RS24390 (NUH86_24395) | 74703..75686 | - | 984 | WP_267253212.1 | WYL domain-containing protein | - |
| NUH86_RS24395 (NUH86_24400) | 75791..79090 | + | 3300 | WP_267253213.1 | TM0106 family RecB-like putative nuclease | - |
| NUH86_RS24400 (NUH86_24405) | 79094..80203 | + | 1110 | WP_267253214.1 | DNA repair exonuclease | - |
| NUH86_RS24405 (NUH86_24410) | 80200..82830 | + | 2631 | WP_267253216.1 | AAA family ATPase | - |
| NUH86_RS24410 (NUH86_24415) | 83059..83913 | + | 855 | WP_267253217.1 | WYL domain-containing protein | - |
| NUH86_RS24415 (NUH86_24420) | 83900..86182 | + | 2283 | Protein_78 | SNF2-related protein | - |
| NUH86_RS24420 (NUH86_24425) | 86244..87077 | + | 834 | WP_267249579.1 | IS5 family transposase IS1031D | Transposase |
| NUH86_RS24425 (NUH86_24430) | 87099..88103 | + | 1005 | Protein_80 | C-terminal helicase domain-containing protein | - |
| NUH86_RS24430 (NUH86_24435) | 88100..88867 | + | 768 | WP_267253218.1 | DUF4391 domain-containing protein | - |
| NUH86_RS24435 (NUH86_24440) | 88860..89903 | + | 1044 | WP_267253219.1 | site-specific DNA-methyltransferase | - |
| NUH86_RS24440 (NUH86_24445) | 89959..91329 | - | 1371 | WP_013039223.1 | IS1380 family transposase ISSp1 | Transposase |
| NUH86_RS24445 (NUH86_24450) | 91437..91946 | + | 510 | Protein_84 | DNA methyltransferase | - |
| NUH86_RS24450 (NUH86_24455) | 92071..93441 | + | 1371 | WP_013039223.1 | IS1380 family transposase ISSp1 | Transposase |
| NUH86_RS24455 (NUH86_24460) | 93666..94154 | + | 489 | Protein_86 | hypothetical protein | - |
| NUH86_RS24460 (NUH86_24465) | 94165..94359 | + | 195 | WP_267253220.1 | hypothetical protein | - |
| NUH86_RS24465 (NUH86_24470) | 94414..95247 | + | 834 | WP_267249579.1 | IS5 family transposase IS1031D | Transposase |
| NUH86_RS24470 (NUH86_24475) | 95240..98191 | + | 2952 | WP_267253221.1 | DEAD/DEAH box helicase family protein | - |
| NUH86_RS24475 (NUH86_24480) | 98423..99838 | + | 1416 | WP_267253037.1 | ISNCY family transposase ISRel10 | Transposase |
| NUH86_RS24480 (NUH86_24485) | 100100..101101 | + | 1002 | WP_267253222.1 | IS30 family transposase ISRssp4 | Transposase |
| NUH86_RS24485 (NUH86_24490) | 101295..102703 | + | 1409 | Protein_92 | ISNCY family transposase ISRel10 | Transposase |
| NUH86_RS24490 (NUH86_24495) | 102900..104174 | - | 1275 | WP_267253223.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| NUH86_RS24495 (NUH86_24500) | 104171..104404 | - | 234 | WP_017503541.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| NUH86_RS24500 (NUH86_24505) | 104530..105132 | - | 603 | WP_267253224.1 | DUF6088 family protein | - |
| NUH86_RS24505 (NUH86_24510) | 105278..106384 | - | 1107 | WP_267253225.1 | T-DNA border endonuclease VirD2 | Relaxase |
| NUH86_RS24510 (NUH86_24515) | 106377..106913 | - | 537 | WP_267253226.1 | hypothetical protein | Relaxase |
| NUH86_RS24515 (NUH86_24520) | 107164..108096 | - | 933 | WP_267253227.1 | ParB/RepB/Spo0J family partition protein | - |
| NUH86_RS24520 (NUH86_24525) | 108096..108860 | - | 765 | WP_267253228.1 | ParA family protein | - |
| NUH86_RS24525 (NUH86_24530) | 108874..109050 | - | 177 | WP_267253229.1 | hypothetical protein | - |
| NUH86_RS24530 (NUH86_24535) | 109236..109325 | - | 90 | Protein_101 | DUF3768 domain-containing protein | - |
| NUH86_RS24535 (NUH86_24540) | 109534..109878 | + | 345 | WP_267253230.1 | DUF4268 domain-containing protein | - |
| NUH86_RS24540 (NUH86_24545) | 109887..112688 | + | 2802 | WP_267253231.1 | AAA family ATPase | - |
| NUH86_RS24545 (NUH86_24550) | 112688..113998 | + | 1311 | WP_267253232.1 | restriction endonuclease | - |
| NUH86_RS24550 (NUH86_24555) | 114045..116300 | - | 2256 | WP_267253233.1 | AAA family ATPase | - |
| NUH86_RS24555 (NUH86_24560) | 116473..116994 | - | 522 | WP_267253234.1 | hypothetical protein | - |
| NUH86_RS24560 (NUH86_24565) | 117088..117252 | - | 165 | WP_267253235.1 | hypothetical protein | - |
| NUH86_RS24565 (NUH86_24570) | 117558..117992 | + | 435 | WP_267253316.1 | hypothetical protein | - |
| NUH86_RS24570 (NUH86_24575) | 118068..118475 | - | 408 | WP_007682669.1 | single-stranded DNA-binding protein | - |
| NUH86_RS24575 (NUH86_24580) | 118909..119652 | - | 744 | WP_267253236.1 | hypothetical protein | - |
| NUH86_RS24580 (NUH86_24585) | 119649..120590 | - | 942 | WP_267253317.1 | DUF2493 domain-containing protein | - |
| NUH86_RS24585 (NUH86_24590) | 120863..121060 | - | 198 | WP_267253237.1 | hypothetical protein | - |
| NUH86_RS24590 (NUH86_24595) | 121164..122048 | - | 885 | WP_267253238.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| NUH86_RS24595 (NUH86_24600) | 122041..122940 | - | 900 | WP_267253239.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| NUH86_RS24600 (NUH86_24605) | 122940..124511 | - | 1572 | WP_267253240.1 | IS607 family transposase ISNma20 | Transposase |
| NUH86_RS24605 (NUH86_24610) | 124630..125244 | + | 615 | WP_267253241.1 | DeoR family transcriptional regulator | - |
| NUH86_RS24610 (NUH86_24615) | 125299..126390 | + | 1092 | WP_267253242.1 | competence protein CoiA family protein | - |
| NUH86_RS24615 (NUH86_24620) | 126443..127366 | - | 924 | WP_267253243.1 | zincin-like metallopeptidase domain-containing protein | - |
| NUH86_RS24620 (NUH86_24625) | 127457..129469 | - | 2013 | WP_267253244.1 | ParB/RepB/Spo0J family partition protein | - |
| NUH86_RS24625 (NUH86_24630) | 129581..131503 | - | 1923 | WP_267253245.1 | strawberry notch C-terminal domain-containing protein | - |
| NUH86_RS24630 (NUH86_24635) | 131787..133019 | + | 1233 | WP_007015824.1 | site-specific integrase | - |
| NUH86_RS24635 (NUH86_24640) | 133016..134371 | + | 1356 | WP_009823940.1 | tyrosine-type recombinase/integrase | - |
| NUH86_RS24640 (NUH86_24645) | 134368..135372 | + | 1005 | WP_009823939.1 | Tyrosine recombinase XerC | VF |
| NUH86_RS24645 (NUH86_24650) | 135417..137612 | - | 2196 | WP_267253246.1 | strawberry notch family protein | - |
| NUH86_RS24650 (NUH86_24655) | 137656..138546 | - | 891 | WP_267253247.1 | toprim domain-containing protein | - |
| NUH86_RS24655 (NUH86_24660) | 138609..138935 | - | 327 | WP_267253248.1 | single-stranded DNA-binding protein | - |
| NUH86_RS24660 (NUH86_24665) | 139612..140700 | + | 1089 | WP_267253318.1 | replication initiation protein | - |
| NUH86_RS24665 (NUH86_24670) | 140895..142097 | + | 1203 | WP_267253249.1 | Chromosome-partitioning ATPase Soj | VF |
| NUH86_RS24670 (NUH86_24675) | 142146..143159 | + | 1014 | WP_267253319.1 | ParB/RepB/Spo0J family partition protein | - |
| NUH86_RS24675 (NUH86_24680) | 143188..143871 | - | 684 | WP_267253250.1 | RES family NAD+ phosphorylase | - |
| NUH86_RS24680 (NUH86_24685) | 143871..144284 | - | 414 | WP_267253251.1 | DUF2384 domain-containing protein | - |
| NUH86_RS24685 (NUH86_24690) | 144378..145598 | - | 1221 | WP_267253252.1 | hypothetical protein | - |
| NUH86_RS24690 (NUH86_24695) | 145782..146942 | + | 1161 | WP_267253320.1 | integrase | - |
| NUH86_RS24695 (NUH86_24700) | 147112..147780 | + | 669 | WP_267253253.1 | hypothetical protein | - |
| NUH86_RS24700 (NUH86_24705) | 147900..148034 | + | 135 | WP_267253254.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|