MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 84199 bp
Accession: NZ_CP102388 Location: 1..84199 Organism: Sphingopyxis sp. DBS4 Replicon: plasmid pDB-4
Accession: NZ_CP102388 Location: 1..84199 Organism: Sphingopyxis sp. DBS4 Replicon: plasmid pDB-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP825_RS23055 | 262..636 | + | 375 | WP_013041565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NP825_RS23060 | 633..959 | + | 327 | WP_006964370.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| NP825_RS23065 | 959..1201 | + | 243 | WP_013041566.1 | hypothetical protein | - |
| NP825_RS23070 | 1194..1493 | + | 300 | WP_013041567.1 | hypothetical protein | - |
| NP825_RS23075 | 1514..2626 | - | 1113 | WP_145206862.1 | hypothetical protein | VF |
| NP825_RS23080 | 2629..4344 | - | 1716 | WP_030092735.1 | P-type conjugative transfer protein TrbL | - |
| NP825_RS23085 | 4355..4597 | - | 243 | WP_145206861.1 | EexN family lipoprotein | - |
| NP825_RS23090 | 4607..5362 | - | 756 | WP_022675885.1 | P-type conjugative transfer protein TrbJ | - |
| NP825_RS23095 | 5388..6737 | - | 1350 | WP_019053954.1 | hypothetical protein | VF |
| NP825_RS23100 | 6768..7541 | - | 774 | WP_145206860.1 | SPOR domain-containing protein | - |
| NP825_RS23105 | 7544..8527 | - | 984 | WP_006964392.1 | P-type conjugative transfer protein TrbG | - |
| NP825_RS23110 | 8545..9264 | - | 720 | WP_006964394.1 | VirB8/TrbF family protein | - |
| NP825_RS23115 | 9251..11830 | - | 2580 | WP_006964396.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| NP825_RS23120 | 11827..12159 | - | 333 | WP_026149854.1 | conjugal transfer protein TrbD | - |
| NP825_RS23125 | 12178..12558 | - | 381 | WP_006964400.1 | TrbC/VirB2 family protein | - |
| NP825_RS23130 | 12572..13537 | - | 966 | WP_026149853.1 | hypothetical protein | VF |
| NP825_RS23135 | 13644..14045 | - | 402 | WP_019053950.1 | helix-turn-helix domain-containing protein | - |
| NP825_RS23140 | 14306..15730 | - | 1425 | WP_066488601.1 | ISKra4 family transposase ISAzs26 | Transposase |
| NP825_RS23145 | 15903..16499 | + | 597 | WP_061772305.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| NP825_RS23150 | 16503..17006 | - | 504 | WP_257551883.1 | plasmid pRiA4b ORF-3 family protein | - |
| NP825_RS23155 | 17055..17819 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| NP825_RS23160 | 17873..18229 | + | 357 | Protein_21 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| NP825_RS23165 | 18186..18881 | - | 696 | WP_257551884.1 | Vitamin B12 transporter BtuB | VF |
| NP825_RS23170 | 19077..19958 | + | 882 | WP_072598887.1 | HTH-type transcriptional regulator TfdS | VF |
| NP825_RS23175 | 20015..20416 | + | 402 | WP_257551885.1 | VOC family protein | - |
| NP825_RS23180 | 20526..20771 | - | 246 | WP_257551886.1 | hypothetical protein | - |
| NP825_RS23185 | 20844..21188 | - | 345 | WP_257551887.1 | YciI family protein | - |
| NP825_RS23190 | 21199..22296 | - | 1098 | WP_257551888.1 | muconate/chloromuconate family cycloisomerase | - |
| NP825_RS23195 | 22353..23576 | - | 1224 | WP_257551889.1 | FAD-dependent oxidoreductase | - |
| NP825_RS23200 | 23566..23892 | - | 327 | WP_257551890.1 | non-heme iron oxygenase ferredoxin subunit | - |
| NP825_RS23205 | 23961..25022 | - | 1062 | WP_257551891.1 | maleylacetate reductase | - |
| NP825_RS23210 | 25019..25741 | - | 723 | WP_257551892.1 | dienelactone hydrolase family protein | - |
| NP825_RS23215 | 25770..26543 | - | 774 | WP_257551893.1 | chlorocatechol 1,2-dioxygenase | - |
| NP825_RS23220 | 26648..27124 | - | 477 | WP_072598895.1 | anthranilate 1,2-dioxygenase small subunit AndAd | - |
| NP825_RS23225 | 27121..28416 | - | 1296 | WP_257551905.1 | anthranilate 1,2-dioxygenase large subunit AndAc | - |
| NP825_RS23230 | 28591..29355 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| NP825_RS23235 | 29467..30231 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| NP825_RS23240 | 30389..31456 | + | 1068 | WP_257551894.1 | maleylacetate reductase | - |
| NP825_RS23245 | 31931..32407 | + | 477 | WP_257551895.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| NP825_RS23250 | 32514..34220 | - | 1707 | WP_257551896.1 | Phenol regulator MopR | VF |
| NP825_RS23255 | 34203..35660 | + | 1458 | WP_257551897.1 | TonB-dependent receptor | - |
| NP825_RS23260 | 35906..37714 | + | 1809 | WP_257551899.1 | FAD-dependent monooxygenase | - |
| NP825_RS23265 | 37741..38028 | + | 288 | WP_257551901.1 | dioxygenase | - |
| NP825_RS23270 | 37994..38758 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| NP825_RS23275 | 38814..39383 | + | 570 | Protein_44 | SprT-like domain-containing protein | - |
| NP825_RS23280 | 39402..39638 | + | 237 | WP_041734157.1 | hypothetical protein | - |
| NP825_RS23285 | 40146..41222 | + | 1077 | WP_014194363.1 | hypothetical protein | - |
| NP825_RS23290 | 41371..42075 | + | 705 | WP_014194362.1 | DNA adenine methylase | - |
| NP825_RS23295 | 42293..42457 | + | 165 | WP_019053931.1 | hypothetical protein | - |
| NP825_RS23300 | 42468..42617 | - | 150 | WP_006954178.1 | hypothetical protein | - |
| NP825_RS23305 | 42765..42983 | - | 219 | WP_226998764.1 | helix-turn-helix transcriptional regulator | - |
| NP825_RS23310 | 43272..44138 | - | 867 | WP_257551875.1 | MBL fold metallo-hydrolase | - |
| NP825_RS23315 | 44183..44773 | - | 591 | WP_234415796.1 | DsbA family protein | - |
| NP825_RS23320 | 44827..45456 | - | 630 | WP_048939562.1 | DsbA family protein | - |
| NP825_RS23325 | 45453..45947 | - | 495 | WP_257551876.1 | TlpA disulfide reductase family protein | - |
| NP825_RS23330 | 46020..46787 | - | 768 | WP_063142326.1 | IS21 family transposase ISSsp5 | Transposase |
| NP825_RS23335 | 46784..48235 | - | 1452 | WP_206378527.1 | IS21 family transposase ISSsp5 | Transposase |
| NP825_RS23340 | 48395..48631 | + | 237 | Protein_57 | AAA family ATPase | - |
| NP825_RS23345 | 48862..49260 | + | 399 | WP_158011144.1 | hypothetical protein | - |
| NP825_RS23350 | 49262..52621 | - | 3360 | WP_145206857.1 | zincin-like metallopeptidase domain-containing protein | - |
| NP825_RS23355 | 52640..52891 | - | 252 | WP_006954184.1 | hypothetical protein | - |
| NP825_RS23360 | 52888..55068 | - | 2181 | WP_019053936.1 | DNA topoisomerase 3 | - |
| NP825_RS23365 | 55073..55606 | - | 534 | WP_006954186.1 | conjugative transfer signal peptidase TraF | - |
| NP825_RS23370 | 55603..57495 | - | 1893 | WP_145206858.1 | Conjugal transfer protein TraG | VF |
| NP825_RS23375 | 57517..59835 | - | 2319 | WP_145206859.1 | Protein TraI | Relaxase |
| NP825_RS23380 | 59852..60238 | - | 387 | WP_006954189.1 | IncP-type oriT-binding protein TraJ | - |
| NP825_RS23385 | 60936..61661 | + | 726 | WP_026149851.1 | ArsA-related P-loop ATPase | - |
| NP825_RS23390 | 61661..62101 | + | 441 | WP_019053940.1 | hypothetical protein | - |
| NP825_RS23395 | 62132..62764 | - | 633 | WP_019053941.1 | hypothetical protein | - |
| NP825_RS23400 | 62882..63904 | - | 1023 | WP_006954195.1 | ParB/RepB/Spo0J family partition protein | - |
| NP825_RS23405 | 63907..64652 | - | 746 | Protein_70 | ParA family protein | - |
| NP825_RS23410 | 64649..64948 | - | 300 | WP_019053944.1 | TrfB-related DNA-binding protein | - |
| NP825_RS23415 | 64941..65186 | - | 246 | WP_238320177.1 | KleE stable inheritance protein | - |
| NP825_RS23420 | 65376..65639 | - | 264 | WP_006954203.1 | hypothetical protein | - |
| NP825_RS23425 | 65744..66157 | - | 414 | WP_006954205.1 | antirestriction protein | - |
| NP825_RS23430 | 66497..67264 | - | 768 | WP_006954207.1 | GntR family transcriptional regulator | - |
| NP825_RS23435 | 67443..67682 | - | 240 | WP_019053948.1 | hypothetical protein | - |
| NP825_RS23440 | 68017..68262 | + | 246 | WP_257551877.1 | plasmid pRiA4b ORF-3 family protein | - |
| NP825_RS23445 | 68281..69045 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| NP825_RS23450 | 69119..69724 | + | 606 | WP_257551878.1 | hypothetical protein | - |
| NP825_RS23455 | 69721..70134 | + | 414 | WP_041734158.1 | hypothetical protein | - |
| NP825_RS23460 | 70158..70502 | + | 345 | WP_014194368.1 | hypothetical protein | - |
| NP825_RS23465 | 70515..70910 | + | 396 | WP_257551879.1 | hypothetical protein | - |
| NP825_RS23470 | 70983..73931 | - | 2949 | WP_233431824.1 | Tn3 family transposase TnpA_ISAzs29 | Transposase |
| NP825_RS23475 | 74060..74653 | + | 594 | WP_007683474.1 | Tn3 family transposase ISPsy42 | Transposase |
| NP825_RS23480 | 74650..76011 | + | 1362 | WP_007683476.1 | hypothetical protein | - |
| NP825_RS23485 | 76345..76596 | + | 252 | WP_066609322.1 | hypothetical protein | - |
| NP825_RS23490 | 76596..77006 | + | 411 | WP_066609323.1 | thermonuclease family protein | - |
| NP825_RS23495 | 77006..77290 | + | 285 | Protein_88 | Tn3 family transposase ISPsy42 | Transposase |
| NP825_RS23500 | 77321..77914 | - | 594 | WP_013039114.1 | Tn3 family transposase ISPsy42 | Transposase |
| NP825_RS23505 | 78054..81011 | + | 2958 | WP_011627729.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| NP825_RS23510 | 81068..81280 | + | 213 | Protein_91 | Tn3 family transposase ISPsy42 | Transposase |
| NP825_RS23515 | 82087..82716 | + | 630 | WP_257551880.1 | hypothetical protein | - |
| NP825_RS23520 | 82755..82886 | + | 132 | WP_257551907.1 | diguanylate cyclase | - |
| NP825_RS23525 | 82913..83305 | + | 393 | WP_257551881.1 | hypothetical protein | - |
| NP825_RS23530 | 83296..83700 | + | 405 | WP_257551882.1 | Blue-light-activated protein | VF |
| NP825_RS23535 | 83681..84037 | - | 357 | WP_014194370.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|