MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 132701 bp
Accession: NZ_CP101831 Location: 556832..689532 Organism: Lacticaseibacillus paracasei strain SMN-LBK Replicon: chromosome
Accession: NZ_CP101831 Location: 556832..689532 Organism: Lacticaseibacillus paracasei strain SMN-LBK Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NPC72_RS02615 (NPC72_02615) | 552794..553693 | + | 900 | WP_003577889.1 | shikimate dehydrogenase | - |
| NPC72_RS02620 (NPC72_02620) | 554138..554953 | + | 816 | WP_003573694.1 | homoserine O-succinyltransferase | - |
| NPC72_RS02625 (NPC72_02625) | 554987..555916 | + | 930 | WP_003577893.1 | cysteine synthase A | - |
| NPC72_RS02630 (NPC72_02630) | 556106..556651 | - | 546 | WP_003577895.1 | hypothetical protein | - |
| NPC72_RS02640 (NPC72_02640) | 556972..558141 | - | 1170 | WP_003569067.1 | IS91 family transposase ISCARN110 | Transposase |
| NPC72_RS02645 (NPC72_02645) | 558254..558514 | - | 261 | WP_003606553.1 | hypothetical protein | - |
| NPC72_RS02650 (NPC72_02650) | 558545..559465 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| NPC72_RS02655 (NPC72_02655) | 559658..560278 | + | 621 | WP_003586911.1 | hypothetical protein | - |
| NPC72_RS02660 (NPC72_02660) | 560262..560441 | - | 180 | WP_016365098.1 | hypothetical protein | - |
| NPC72_RS02665 (NPC72_02665) | 560691..561398 | - | 708 | WP_003586913.1 | zinc ribbon domain-containing protein | - |
| NPC72_RS02670 (NPC72_02670) | 561557..561979 | - | 423 | WP_003572182.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NPC72_RS02675 (NPC72_02675) | 561972..562325 | - | 354 | WP_003572184.1 | helix-turn-helix transcriptional regulator | - |
| NPC72_RS02680 (NPC72_02680) | 562569..562817 | + | 249 | WP_003574003.1 | hypothetical protein | - |
| NPC72_RS02685 (NPC72_02685) | 562859..563059 | + | 201 | WP_003572187.1 | hypothetical protein | - |
| NPC72_RS02690 (NPC72_02690) | 563030..563863 | - | 834 | WP_003586916.1 | TIGR02391 family protein | - |
| NPC72_RS02695 (NPC72_02695) | 563924..564682 | + | 759 | WP_010493122.1 | ORF6C domain-containing protein | - |
| NPC72_RS02700 (NPC72_02700) | 564683..564862 | + | 180 | WP_003572193.1 | hypothetical protein | - |
| NPC72_RS02705 (NPC72_02705) | 564855..565106 | - | 252 | WP_003606636.1 | DUF1883 domain-containing protein | - |
| NPC72_RS02710 (NPC72_02710) | 565172..565528 | + | 357 | WP_003586919.1 | DUF771 domain-containing protein | - |
| NPC72_RS02715 (NPC72_02715) | 565613..565816 | + | 204 | WP_003572201.1 | hypothetical protein | - |
| NPC72_RS02720 (NPC72_02720) | 565799..566344 | - | 546 | WP_003586921.1 | hypothetical protein | - |
| NPC72_RS02725 (NPC72_02725) | 566525..566839 | + | 315 | WP_003661649.1 | hypothetical protein | - |
| NPC72_RS02730 (NPC72_02730) | 566832..567578 | + | 747 | WP_003586926.1 | DnaD domain protein | - |
| NPC72_RS02735 (NPC72_02735) | 567593..568417 | + | 825 | WP_003574014.1 | ATP-binding protein | - |
| NPC72_RS02740 (NPC72_02740) | 568417..568935 | + | 519 | WP_003574016.1 | 3'-5' exonuclease | - |
| NPC72_RS02745 (NPC72_02745) | 568982..569404 | + | 423 | WP_003564822.1 | hypothetical protein | - |
| NPC72_RS02750 (NPC72_02750) | 569406..570143 | + | 738 | WP_003572217.1 | hypothetical protein | - |
| NPC72_RS02755 (NPC72_02755) | 570155..570442 | + | 288 | WP_010493149.1 | hypothetical protein | - |
| NPC72_RS02760 (NPC72_02760) | 570512..570844 | + | 333 | WP_003586929.1 | hypothetical protein | - |
| NPC72_RS02765 (NPC72_02765) | 571359..571802 | + | 444 | WP_010493154.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| NPC72_RS02770 (NPC72_02770) | 572315..572968 | + | 654 | WP_003586931.1 | hypothetical protein | - |
| NPC72_RS02775 (NPC72_02775) | 573219..574215 | + | 997 | Protein_550 | IS30 family transposase ISApl1 | Transposase |
| NPC72_RS02780 (NPC72_02780) | 574411..574629 | - | 219 | WP_003573729.1 | CsbD family protein | - |
| NPC72_RS02785 (NPC72_02785) | 575052..576268 | + | 1217 | Protein_552 | hypothetical protein | - |
| NPC72_RS02790 (NPC72_02790) | 576255..576590 | + | 336 | WP_010493173.1 | ribonucleoside-diphosphate reductase | - |
| NPC72_RS02795 (NPC72_02795) | 576773..577084 | + | 312 | WP_003582149.1 | IS3 family transposase IS1163 | Transposase |
| NPC72_RS02800 (NPC72_02800) | 577114..577842 | + | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| NPC72_RS02805 (NPC72_02805) | 577839..578717 | + | 879 | WP_012491054.1 | IS3 family transposase ISSth1b | Transposase |
| NPC72_RS02810 (NPC72_02810) | 578796..579626 | + | 831 | WP_016363323.1 | IS3 family transposase IS1520 | Transposase |
| NPC72_RS02815 (NPC72_02815) | 580308..580586 | + | 279 | WP_003586951.1 | hypothetical protein | - |
| NPC72_RS02820 (NPC72_02820) | 580598..580864 | + | 267 | WP_014566886.1 | hypothetical protein | - |
| NPC72_RS02825 (NPC72_02825) | 580888..582471 | + | 1584 | WP_003586954.1 | hypothetical protein | VF |
| NPC72_RS02830 (NPC72_02830) | 582490..582966 | + | 477 | WP_003586956.1 | PcfB family protein | - |
| NPC72_RS02835 (NPC72_02835) | 582966..584867 | + | 1902 | WP_003606869.1 | type IV secretory system conjugative DNA transfer family protein | - |
| NPC72_RS02840 (NPC72_02840) | 584885..585091 | + | 207 | WP_003571730.1 | hypothetical protein | - |
| NPC72_RS02845 (NPC72_02845) | 585111..585944 | + | 834 | WP_003606870.1 | hypothetical protein | - |
| NPC72_RS02850 (NPC72_02850) | 585962..586333 | + | 372 | WP_016363322.1 | PrgI family protein | - |
| NPC72_RS02855 (NPC72_02855) | 586281..588737 | + | 2457 | WP_003586965.1 | ATP-binding protein | - |
| NPC72_RS02860 (NPC72_02860) | 588727..591204 | + | 2478 | WP_003586967.1 | CHAP domain-containing protein | - |
| NPC72_RS02865 (NPC72_02865) | 591218..591742 | + | 525 | WP_003586970.1 | hypothetical protein | - |
| NPC72_RS02870 (NPC72_02870) | 591760..591990 | + | 231 | WP_003586972.1 | hypothetical protein | - |
| NPC72_RS02875 (NPC72_02875) | 592026..593171 | + | 1146 | WP_003586973.1 | hypothetical protein | - |
| NPC72_RS02880 (NPC72_02880) | 593189..594163 | + | 975 | WP_016363319.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| NPC72_RS02885 (NPC72_02885) | 594251..594526 | + | 276 | WP_003589454.1 | hypothetical protein | - |
| NPC72_RS02890 (NPC72_02890) | 594773..595174 | + | 402 | WP_016363316.1 | MobC family plasmid mobilization relaxosome protein | - |
| NPC72_RS02895 (NPC72_02895) | 595146..597353 | + | 2208 | WP_003606873.1 | relaxase/mobilization nuclease domain-containing protein | - |
| NPC72_RS02900 (NPC72_02900) | 597398..598789 | + | 1392 | WP_003589449.1 | DUF3991 domain-containing protein | - |
| NPC72_RS02910 (NPC72_02910) | 600621..601379 | + | 759 | WP_003606711.1 | MurR/RpiR family transcriptional regulator | - |
| NPC72_RS02915 (NPC72_02915) | 601497..603170 | + | 1674 | WP_003587163.1 | PTS transporter subunit EIIC | - |
| NPC72_RS02920 (NPC72_02920) | 603183..603953 | + | 771 | WP_003587161.1 | HAD-IIB family hydrolase | - |
| NPC72_RS02925 (NPC72_02925) | 603968..604453 | + | 486 | WP_016363706.1 | PTS glucose transporter subunit IIA | - |
| NPC72_RS02930 (NPC72_02930) | 604596..605383 | + | 788 | WP_099973804.1 | IS5 family transposase ISCaa8 | Transposase |
| NPC72_RS02935 (NPC72_02935) | 605390..605968 | + | 579 | Protein_582 | hypothetical protein | - |
| NPC72_RS02940 (NPC72_02940) | 605983..606942 | + | 960 | WP_003587152.1 | D-2-hydroxyacid dehydrogenase | - |
| NPC72_RS02945 (NPC72_02945) | 607060..607446 | - | 387 | WP_003587151.1 | hypothetical protein | - |
| NPC72_RS02950 (NPC72_02950) | 607439..607759 | - | 321 | WP_016363695.1 | hypothetical protein | - |
| NPC72_RS02955 (NPC72_02955) | 607752..609059 | - | 1308 | WP_003587146.1 | Y-family DNA polymerase | - |
| NPC72_RS02960 (NPC72_02960) | 609578..610837 | - | 1260 | WP_003606688.1 | restriction endonuclease subunit S | - |
| NPC72_RS02965 (NPC72_02965) | 610834..612450 | - | 1617 | WP_003587143.1 | type I restriction-modification system subunit M | - |
| NPC72_RS02970 (NPC72_02970) | 612464..615631 | - | 3168 | WP_003606687.1 | HsdR family type I site-specific deoxyribonuclease | - |
| NPC72_RS02975 (NPC72_02975) | 615766..616680 | + | 915 | WP_003587138.1 | hypothetical protein | - |
| NPC72_RS02980 (NPC72_02980) | 617195..618250 | + | 1056 | Protein_591 | IS30 family transposase ISCth3 | Transposase |
| NPC72_RS02985 (NPC72_02985) | 618507..619229 | + | 723 | WP_003587133.1 | nitroreductase family protein | - |
| NPC72_RS02990 (NPC72_02990) | 619370..619519 | + | 150 | WP_228772279.1 | hypothetical protein | - |
| NPC72_RS02995 (NPC72_02995) | 619606..620190 | + | 585 | WP_003587130.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| NPC72_RS03000 (NPC72_03000) | 620277..621440 | + | 1164 | WP_003606682.1 | PrsW family intramembrane metalloprotease | - |
| NPC72_RS03005 (NPC72_03005) | 621600..621992 | - | 393 | WP_003587125.1 | hypothetical protein | - |
| NPC72_RS03010 (NPC72_03010) | 622048..622299 | + | 252 | WP_003586983.1 | IS3 family transposase IS153 | Transposase |
| NPC72_RS03015 (NPC72_03015) | 622317..623195 | + | 879 | WP_019875241.1 | IS3 family transposase ISBce13 | Transposase |
| NPC72_RS03020 (NPC72_03020) | 623353..623778 | - | 426 | WP_032676118.1 | IS3 family transposase IS1223 | Transposase |
| NPC72_RS03025 (NPC72_03025) | 623830..624093 | - | 264 | WP_003587109.1 | hypothetical protein | - |
| NPC72_RS03030 (NPC72_03030) | 624153..626975 | - | 2823 | WP_003587111.1 | cation-transporting P-type ATPase | - |
| NPC72_RS03035 (NPC72_03035) | 627284..628071 | + | 788 | WP_099973805.1 | IS5 family transposase ISCaa8 | Transposase |
| NPC72_RS03040 (NPC72_03040) | 628068..628229 | - | 162 | WP_016363761.1 | hypothetical protein | - |
| NPC72_RS03045 (NPC72_03045) | 628588..629175 | - | 588 | WP_003586668.1 | hypothetical protein ; Integrase | Integrase |
| NPC72_RS03050 (NPC72_03050) | 629252..629530 | + | 279 | WP_003586674.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| NPC72_RS03055 (NPC72_03055) | 629530..629904 | + | 375 | WP_003586676.1 | type II toxin-antitoxin system YafQ family toxin | - |
| NPC72_RS03060 (NPC72_03060) | 630174..631589 | - | 1416 | WP_016365202.1 | IS5 family transposase ISLca2 | Transposase |
| NPC72_RS03065 (NPC72_03065) | 631998..632465 | + | 468 | WP_003587210.1 | DNA starvation/stationary phase protection protein | - |
| NPC72_RS03070 (NPC72_03070) | 632712..633455 | + | 744 | WP_003587212.1 | ABC transporter ATP-binding protein | - |
| NPC72_RS03075 (NPC72_03075) | 633433..634680 | + | 1248 | WP_010620835.1 | ABC transporter permease | - |
| NPC72_RS03080 (NPC72_03080) | 634685..635356 | + | 672 | WP_003587215.1 | TetR/AcrR family transcriptional regulator | - |
| NPC72_RS03085 (NPC72_03085) | 635460..636176 | - | 717 | WP_003587217.1 | hypothetical protein | - |
| NPC72_RS03090 (NPC72_03090) | 636260..636666 | + | 407 | Protein_613 | IS5 family transposase ISCARN82 | Transposase |
| NPC72_RS03095 (NPC72_03095) | 636769..637786 | + | 1018 | Protein_614 | IS30 family transposase ISSag3 | Transposase |
| NPC72_RS03100 (NPC72_03100) | 637907..638455 | - | 549 | WP_003582473.1 | ferritin-like domain-containing protein | - |
| NPC72_RS03105 (NPC72_03105) | 638465..638686 | - | 222 | WP_003582479.1 | heavy-metal-associated domain-containing protein | - |
| NPC72_RS03110 (NPC72_03110) | 638728..640626 | - | 1899 | WP_016363699.1 | heavy metal translocating P-type ATPase | - |
| NPC72_RS03115 (NPC72_03115) | 640861..641163 | - | 303 | Protein_618 | IS5 family transposase ISLrh3 | Transposase |
| NPC72_RS03125 (NPC72_03125) | 642240..642671 | + | 432 | WP_003607154.1 | CopY/TcrY family copper transport repressor | - |
| NPC72_RS03130 (NPC72_03130) | 642922..645189 | + | 2268 | WP_003589066.1 | heavy metal translocating P-type ATPase | - |
| NPC72_RS03135 (NPC72_03135) | 645264..645590 | - | 327 | Protein_622 | MFS transporter | - |
| NPC72_RS03140 (NPC72_03140) | 645612..645901 | - | 290 | Protein_623 | IS5 family transposase ISCARN82 | Transposase |
| NPC72_RS03145 (NPC72_03145) | 645856..646182 | - | 327 | WP_003589061.1 | IS3 family transposase IS153 | Transposase |
| NPC72_RS03150 (NPC72_03150) | 646379..647911 | + | 1533 | WP_003606758.1 | ABC transporter permease/substrate-binding protein | - |
| NPC72_RS03155 (NPC72_03155) | 647911..648849 | + | 939 | WP_003606756.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| NPC72_RS03160 (NPC72_03160) | 649079..650140 | + | 1062 | WP_003589055.1 | ABC transporter permease | - |
| NPC72_RS03165 (NPC72_03165) | 650145..650816 | + | 672 | WP_003606755.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| NPC72_RS03170 (NPC72_03170) | 650923..651606 | + | 684 | WP_049169626.1 | IS6 family transposase ISBth20 | Transposase |
| NPC72_RS03175 (NPC72_03175) | 651849..652277 | - | 429 | WP_003586786.1 | hypothetical protein | - |
| NPC72_RS03180 (NPC72_03180) | 652466..652768 | - | 303 | Protein_631 | IS30 family transposase | - |
| NPC72_RS03185 (NPC72_03185) | 652880..653800 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| NPC72_RS03190 (NPC72_03190) | 653821..654186 | - | 366 | Protein_633 | IS30 family transposase | - |
| NPC72_RS03195 (NPC72_03195) | 654323..655738 | + | 1416 | WP_003600251.1 | IS5 family transposase ISLca2 | Transposase |
| NPC72_RS03200 (NPC72_03200) | 655904..658075 | - | 2172 | WP_003607130.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| NPC72_RS03205 (NPC72_03205) | 658247..659236 | + | 990 | WP_003586769.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| NPC72_RS03210 (NPC72_03210) | 659233..659718 | + | 486 | WP_003586772.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| NPC72_RS03215 (NPC72_03215) | 660450..660692 | + | 243 | WP_016363783.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| NPC72_RS03220 (NPC72_03220) | 660685..660966 | + | 282 | WP_003573774.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| NPC72_RS03225 (NPC72_03225) | 661166..661564 | + | 399 | WP_003586778.1 | DUF1722 domain-containing protein | - |
| NPC72_RS03230 (NPC72_03230) | 661809..662918 | - | 1110 | WP_003607129.1 | hypothetical protein | - |
| NPC72_RS03235 (NPC72_03235) | 662920..664350 | - | 1431 | WP_003607128.1 | hypothetical protein | - |
| NPC72_RS03240 (NPC72_03240) | 664540..665223 | + | 684 | WP_003586785.1 | IS6 family transposase ISBth20 | Transposase |
| NPC72_RS03245 (NPC72_03245) | 665556..668324 | + | 2769 | WP_003607349.1 | CRISPR-associated helicase/endonuclease Cas3 | - |
| NPC72_RS03250 (NPC72_03250) | 668305..670014 | + | 1710 | WP_003586647.1 | type I-E CRISPR-associated protein Cse1/CasA | - |
| NPC72_RS03255 (NPC72_03255) | 670011..670613 | + | 603 | WP_003586648.1 | type I-E CRISPR-associated protein Cse2/CasB | - |
| NPC72_RS03260 (NPC72_03260) | 670606..671691 | + | 1086 | WP_003586650.1 | type I-E CRISPR-associated protein Cas7/Cse4/CasC | - |
| NPC72_RS03265 (NPC72_03265) | 671663..672373 | + | 711 | WP_003586652.1 | type I-E CRISPR-associated protein Cas5/CasD | - |
| NPC72_RS03270 (NPC72_03270) | 672389..673036 | + | 648 | WP_003586654.1 | type I-E CRISPR-associated protein Cas6/Cse3/CasE | - |
| NPC72_RS03275 (NPC72_03275) | 673041..673988 | + | 948 | WP_003586656.1 | type I-E CRISPR-associated endonuclease Cas1e | - |
| NPC72_RS03280 (NPC72_03280) | 673985..674890 | + | 906 | WP_003586658.1 | type I-E CRISPR-associated endoribonuclease Cas2e | - |
| NPC72_RS03285 (NPC72_03285) | 676938..677621 | + | 684 | WP_002816607.1 | IS6 family transposase ISBth20 | Transposase |
| NPC72_RS03290 (NPC72_03290) | 677725..679053 | + | 1329 | WP_003587117.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| NPC72_RS03295 (NPC72_03295) | 679254..679811 | + | 558 | WP_003567312.1 | hypothetical protein | - |
| NPC72_RS03300 (NPC72_03300) | 680089..680328 | + | 240 | Protein_655 | hypothetical protein | - |
| NPC72_RS03305 (NPC72_03305) | 680851..680852 | - | 2 | WP_099973807.1 | IS5 family transposase ISCARN82 | Transposase |
| NPC72_RS03310 (NPC72_03310) | 681169..681561 | - | 393 | WP_003587174.1 | ISLre2 family transposase ISLrh4 | Transposase |
| NPC72_RS03315 (NPC72_03315) | 681887..682135 | - | 249 | WP_003593233.1 | DUF1722 domain-containing protein | - |
| NPC72_RS03320 (NPC72_03320) | 682329..682844 | - | 516 | Protein_659 | anion permease | - |
| NPC72_RS03325 (NPC72_03325) | 682954..683874 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| NPC72_RS03330 (NPC72_03330) | 683910..684161 | - | 252 | WP_002816285.1 | IS3 family transposase IS153 | Transposase |
| NPC72_RS03335 (NPC72_03335) | 684346..684828 | + | 483 | WP_003589537.1 | PTS glucose transporter subunit IIA | - |
| NPC72_RS03340 (NPC72_03340) | 684910..685218 | + | 309 | WP_003577175.1 | IS3 family transposase IS1163 | Transposase |
| NPC72_RS03345 (NPC72_03345) | 685228..686106 | - | 879 | WP_012491054.1 | IS3 family transposase ISSth1b | Transposase |
| NPC72_RS03350 (NPC72_03350) | 686103..686831 | - | 729 | WP_003582147.1 | IS3 family transposase ISSth1b | Transposase |
| NPC72_RS03355 (NPC72_03355) | 686933..687763 | + | 831 | WP_016363323.1 | IS3 family transposase IS1520 | Transposase |
| NPC72_RS03360 (NPC72_03360) | 687923..688894 | + | 972 | WP_032771614.1 | GH25 family lysozyme | - |
| NPC72_RS03365 (NPC72_03365) | 689578..690366 | + | 789 | WP_003587240.1 | hypothetical protein | - |
| NPC72_RS03370 (NPC72_03370) | 690452..691588 | - | 1137 | WP_003587241.1 | PLP-dependent transferase | - |
| NPC72_RS03375 (NPC72_03375) | 691690..692502 | - | 813 | WP_003607400.1 | transporter substrate-binding domain-containing protein | - |
| NPC72_RS03380 (NPC72_03380) | 692534..693247 | - | 714 | WP_003573812.1 | amino acid ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|