MGE detailed information
MGE type: Prophage MGE length: 47132 bp
Accession: NZ_CP101302 Location: 2580755..2627886 Organism: Escherichia coli strain 2000-3039 Replicon: chromosome
Accession: NZ_CP101302 Location: 2580755..2627886 Organism: Escherichia coli strain 2000-3039 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMK59_RS12855 (2576744) | 2576744..2576791 | + | 48 | WP_211180494.1 | protein YnaN | - |
| NMK59_RS12860 (2576805) | 2576805..2577788 | + | 984 | WP_000387395.1 | zinc transporter ZntB | - |
| NMK59_RS12865 (2578063) | 2578063..2578236 | + | 174 | WP_001296046.1 | protein YnaL | - |
| NMK59_RS12870 (2578266) | 2578266..2579639 | + | 1374 | WP_000123745.1 | ATP-dependent RNA helicase DbpA | - |
| NMK59_RS12875 (2579768) | 2579768..2580703 | - | 936 | WP_023982888.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| NMK59_RS12880 (2580755) | 2580755..2581990 | - | 1236 | WP_000040852.1 | Levansucrase ; Integrase | Integrase |
| NMK59_RS12885 (2581992) | 2581992..2582207 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (2582311) | 2582311..2582489 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2582311) | 2582311..2582489 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2582311) | 2582311..2582489 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2582311) | 2582311..2582489 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| NMK59_RS12890 (2582286) | 2582286..2582495 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| NMK59_RS12895 (2582488) | 2582488..2582682 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| NMK59_RS12900 (2582739) | 2582739..2583548 | - | 810 | WP_000595430.1 | recombination protein RecT | - |
| NMK59_RS12905 (2583541) | 2583541..2586186 | - | 2646 | WP_000105154.1 | exodeoxyribonuclease VIII | - |
| NMK59_RS12910 (2586288) | 2586288..2586563 | - | 276 | WP_000632297.1 | protein RacC | - |
| NMK59_RS12915 (2586638) | 2586638..2586808 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| NMK59_RS12920 (2586808) | 2586808..2587029 | - | 222 | WP_000560227.1 | cell division protein FtsZ | - |
| NMK59_RS12925 (2587076) | 2587076..2587924 | - | 849 | WP_000935592.1 | Rha family phage regulatory protein | - |
| NMK59_RS12930 (2588498) | 2588498..2588707 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| NMK59_RS12935 (2588708) | 2588708..2589346 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| NMK59_RS12940 (2589358) | 2589358..2589510 | - | 153 | WP_032362313.1 | DUF1391 family protein | - |
| NMK59_RS12945 (2589891) | 2589891..2590355 | - | 465 | WP_001253182.1 | helix-turn-helix domain-containing protein | - |
| NMK59_RS12950 (2590460) | 2590460..2590735 | + | 276 | WP_000171139.1 | YdaS family helix-turn-helix protein | - |
| NMK59_RS12955 (2590719) | 2590719..2591141 | + | 423 | WP_000702025.1 | toxin YdaT family protein | - |
| NMK59_RS12960 (2591219) | 2591219..2592007 | + | 789 | WP_001337237.1 | hypothetical protein | - |
| NMK59_RS12965 (2592014) | 2592014..2592760 | + | 747 | WP_000788976.1 | ATP-binding protein | - |
| NMK59_RS12970 (2592783) | 2592783..2593544 | + | 762 | WP_000450675.1 | DUF1627 domain-containing protein | - |
| NMK59_RS12975 (2593560) | 2593560..2593982 | + | 423 | WP_000196186.1 | DUF977 family protein | - |
| NMK59_RS12980 (2594040) | 2594040..2594396 | + | 357 | WP_000403783.1 | hypothetical protein | - |
| NMK59_RS12985 (2594447) | 2594447..2594659 | + | 213 | WP_000935421.1 | hypothetical protein | - |
| NMK59_RS12990 (2594692) | 2594692..2594909 | + | 218 | Protein_2539 | DUF4014 family protein | - |
| NMK59_RS12995 (2594911) | 2594911..2595174 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| NMK59_RS13000 (2595185) | 2595185..2595310 | + | 126 | Protein_2541 | hypothetical protein | - |
| NMK59_RS13005 (2595332) | 2595332..2595649 | + | 318 | Protein_2542 | DUF551 domain-containing protein | - |
| NMK59_RS13010 (2595899) | 2595899..2596087 | + | 189 | WP_244443673.1 | DUF551 domain-containing protein | - |
| NMK59_RS13015 (2596203) | 2596203..2596307 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| NMK59_RS13020 (2596553) | 2596553..2596708 | + | 156 | WP_000813257.1 | type I toxin-antitoxin system toxin HokD | - |
| NMK59_RS13025 (2596828) | 2596828..2597697 | + | 870 | WP_000132062.1 | hypothetical protein | - |
| NMK59_RS13030 (2597942) | 2597942..2598334 | + | 393 | WP_000615960.1 | hypothetical protein | - |
| NMK59_RS13035 (2598528) | 2598528..2598605 | + | 78 | Protein_2548 | hypothetical protein | - |
| NMK59_RS13040 (2598761) | 2598761..2599360 | + | 600 | WP_000940306.1 | DUF1367 family protein | - |
| NMK59_RS13045 (2599360) | 2599360..2599650 | + | 291 | WP_000228035.1 | DUF1364 domain-containing protein | - |
| NMK59_RS13050 (2599647) | 2599647..2600201 | + | 555 | WP_000640148.1 | DUF1133 family protein | - |
| NMK59_RS13055 (2600475) | 2600475..2601056 | + | 582 | WP_000211403.1 | ORF6N domain-containing protein | - |
| NMK59_RS13060 (2601311) | 2601311..2601673 | + | 363 | Protein_2553 | tellurite resistance TerB family protein | - |
| NMK59_RS13065 (2601670) | 2601670..2601837 | + | 168 | WP_000216636.1 | DUF3927 family protein | - |
| NMK59_RS13070 (2602245) | 2602245..2604098 | + | 1854 | WP_254856984.1 | SASA family carbohydrate esterase | - |
| NMK59_RS13075 (2604248) | 2604248..2604463 | + | 216 | WP_000284518.1 | class II holin family protein | - |
| NMK59_RS13080 (2604468) | 2604468..2604812 | + | 345 | WP_000731236.1 | YdfR family protein | - |
| NMK59_RS13085 (2604863) | 2604863..2605396 | + | 534 | WP_000992128.1 | lysozyme | - |
| NMK59_RS13090 (2605695) | 2605695..2606162 | + | 468 | WP_001082545.1 | lysis protein | - |
| NMK59_RS13095 (2606604) | 2606604..2607149 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| NMK59_RS13100 (2607124) | 2607124..2609049 | + | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| NMK59_RS13105 (2609046) | 2609046..2609252 | + | 207 | WP_000198153.1 | gpW family protein | - |
| NMK59_RS13110 (2609249) | 2609249..2610850 | + | 1602 | WP_001415980.1 | phage portal protein | - |
| NMK59_RS13115 (2610831) | 2610831..2612150 | + | 1320 | WP_000123251.1 | S49 family peptidase | - |
| NMK59_RS13120 (2612160) | 2612160..2612492 | + | 333 | WP_001365129.1 | head decoration protein | - |
| NMK59_RS13125 (2612548) | 2612548..2613573 | + | 1026 | WP_000063258.1 | major capsid protein | - |
| NMK59_RS13130 (2613615) | 2613615..2614010 | + | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| NMK59_RS13135 (2614022) | 2614022..2614375 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| NMK59_RS13140 (2614387) | 2614387..2614965 | + | 579 | WP_000975096.1 | phage tail protein | - |
| NMK59_RS13145 (2614962) | 2614962..2615357 | + | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| NMK59_RS13150 (2615365) | 2615365..2616117 | + | 753 | WP_032362310.1 | phage tail protein | - |
| NMK59_RS13155 (2616131) | 2616131..2616553 | + | 423 | WP_032361117.1 | phage minor tail protein G | - |
| NMK59_RS13160 (2616580) | 2616580..2616993 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| NMK59_RS13165 (2616974) | 2616974..2619586 | + | 2613 | WP_254856985.1 | phage tail tape measure protein | - |
| NMK59_RS13170 (2619583) | 2619583..2619912 | + | 330 | WP_000847298.1 | phage tail protein | - |
| NMK59_RS13175 (2619912) | 2619912..2620610 | + | 699 | WP_001443841.1 | phage minor tail protein L | - |
| NMK59_RS13180 (2620621) | 2620621..2621364 | + | 744 | WP_000194707.1 | C40 family peptidase | - |
| NMK59_RS13185 (2621361) | 2621361..2621942 | + | 582 | WP_001089985.1 | tail assembly protein | - |
| NMK59_RS13190 (2622178) | 2622178..2625570 | + | 3393 | WP_032362307.1 | host specificity protein J | - |
| NMK59_RS13195 (2625638) | 2625638..2626237 | + | 600 | WP_001230428.1 | hypothetical protein | VF |
| NMK59_RS13200 (2626302) | 2626302..2627615 | + | 1314 | WP_032362306.1 | ISNCY family transposase KIS | Transposase |
| NMK59_RS13205 (2627617) | 2627617..2627886 | + | 270 | WP_001023356.1 | phage tail fiber C-terminal domain-containing protein | - |
| NMK59_RS13210 (2628289) | 2628289..2629302 | + | 1014 | WP_122993102.1 | type III secretion system effector zinc metalloprotease NleC | - |
| NMK59_RS13215 (2630106) | 2630106..2630540 | - | 435 | WP_001082294.1 | universal stress protein UspF | - |
| NMK59_RS13220 (2630681) | 2630681..2631814 | - | 1134 | WP_000837924.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|