MGE detailed information
MGE type: Prophage MGE length: 108989 bp
Accession: NZ_CP101292 Location: 3018967..3127955 Organism: Escherichia coli strain 2003-3014 Replicon: chromosome
Accession: NZ_CP101292 Location: 3018967..3127955 Organism: Escherichia coli strain 2003-3014 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMK58_RS15545 (3015480) | 3015480..3016226 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| NMK58_RS15550 (3016315) | 3016315..3017001 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NMK58_RS15555 (3017179) | 3017179..3017382 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NMK58_RS15560 (3017418) | 3017418..3018878 | - | 1461 | WP_000527750.1 | mannitol dehydrogenase family protein | - |
| NMK58_RS15565 (3018967) | 3018967..3020250 | - | 1284 | Protein_3042 | MHS family MFS transporter YdfJ | - |
| NMK58_RS15570 (3020382) | 3020382..3020624 | + | 243 | WP_072279599.1 | DinI-like family protein | - |
| NMK58_RS15575 (3020733) | 3020733..3020890 | - | 158 | Protein_3044 | DUF4376 domain-containing protein | - |
| NMK58_RS15580 (3021219) | 3021219..3021869 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| NMK58_RS15585 (3022094) | 3022094..3022983 | - | 890 | Protein_3046 | hypothetical protein | VF |
| NMK58_RS15590 (3023039) | 3023039..3023233 | - | 195 | Protein_3047 | IS66 family transposase ISEc23 | Transposase |
| NMK58_RS15595 (3023920) | 3023920..3024618 | - | 699 | WP_024017370.1 | hypothetical protein | VF |
| NMK58_RS15600 (3024836) | 3024836..3025408 | - | 573 | WP_024017371.1 | hypothetical protein | VF |
| NMK58_RS15605 (3025520) | 3025520..3025789 | - | 270 | WP_001023356.1 | phage tail fiber C-terminal domain-containing protein | - |
| NMK58_RS15610 (3025791) | 3025791..3027104 | - | 1314 | WP_000268964.1 | ISNCY family transposase KIS | Transposase |
| NMK58_RS15615 (3027169) | 3027169..3027792 | - | 624 | WP_032271866.1 | Attachment invasion locus protein | VF |
| NMK58_RS15620 (3027861) | 3027861..3031337 | - | 3477 | WP_064460440.1 | host specificity protein J | - |
| NMK58_RS15625 (3031584) | 3031584..3032165 | - | 582 | WP_001090070.1 | tail assembly protein | - |
| NMK58_RS15630 (3032162) | 3032162..3032788 | - | 627 | Protein_3055 | C40 family peptidase | - |
| NMK58_RS15635 (3032871) | 3032871..3033275 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| NMK58_RS15640 (3033272) | 3033272..3033619 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| NMK58_RS15645 (3033668) | 3033668..3035206 | + | 1539 | WP_000099160.1 | IS66 family transposase ISEc22 | Transposase |
| NMK58_RS15650 (3035245) | 3035245..3035367 | - | 123 | Protein_3059 | Mov34/MPN/PAD-1 family protein | - |
| NMK58_RS15655 (3035378) | 3035378..3036076 | - | 699 | WP_064460438.1 | phage minor tail protein L | - |
| NMK58_RS15660 (3036076) | 3036076..3036417 | - | 342 | WP_000807927.1 | phage tail protein | - |
| NMK58_RS15665 (3036410) | 3036410..3039652 | - | 3243 | WP_254854519.1 | phage tail tape measure protein | - |
| NMK58_RS15670 (3039704) | 3039704..3039913 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| NMK58_RS15675 (3040009) | 3040009..3040383 | - | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| NMK58_RS15680 (3040389) | 3040389..3041105 | - | 717 | WP_001275471.1 | major tail subunit | - |
| NMK58_RS15685 (3041171) | 3041171..3041515 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| NMK58_RS15690 (3041512) | 3041512..3041958 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| NMK58_RS15695 (3041955) | 3041955..3042305 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| NMK58_RS15700 (3042316) | 3042316..3042642 | - | 327 | WP_000125984.1 | head-tail connector protein | - |
| NMK58_RS15705 (3042639) | 3042639..3045223 | - | 2585 | Protein_3070 | phage portal protein | - |
| NMK58_RS15710 (3045169) | 3045169..3045390 | - | 222 | WP_001063096.1 | hypothetical protein | - |
| NMK58_RS15715 (3045435) | 3045435..3047372 | - | 1938 | WP_000173031.1 | phage major capsid protein | - |
| NMK58_RS15720 (3047436) | 3047436..3049097 | - | 1662 | WP_045907087.1 | terminase large subunit | - |
| NMK58_RS15725 (3049094) | 3049094..3049657 | - | 564 | WP_000958366.1 | terminase small subunit | - |
| NMK58_RS15730 (3049950) | 3049950..3050315 | - | 366 | WP_000279796.1 | HNH endonuclease | - |
| NMK58_RS15735 (3050357) | 3050357..3050581 | + | 225 | WP_001448509.1 | YlcI/YnfO family protein | - |
| NMK58_RS15740 (3050663) | 3050663..3050977 | - | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| NMK58_RS15745 (3051503) | 3051503..3051688 | - | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| NMK58_RS15750 (3051916) | 3051916..3052065 | - | 150 | WP_000455402.1 | hypothetical protein | - |
| NMK58_RS15755 (3052065) | 3052065..3052634 | - | 570 | WP_001056883.1 | phage antirepressor N-terminal domain-containing protein | - |
| NMK58_RS15760 (3052909) | 3052909..3053442 | - | 534 | WP_000087703.1 | lysozyme | - |
| NMK58_RS15765 (3053447) | 3053447..3053662 | - | 216 | WP_000284506.1 | class II holin family protein | - |
| NMK58_RS15770 (3053739) | 3053739..3054011 | - | 273 | WP_001290217.1 | DUF826 domain-containing protein | - |
| NMK58_RS15775 (3054052) | 3054052..3054231 | - | 180 | WP_000143462.1 | DUF1378 family protein | - |
| NMK58_RS15780 (3054367) | 3054367..3056304 | - | 1938 | WP_044711843.1 | SASA family carbohydrate esterase | - |
| NMK58_RS15785 (3056281) | 3056281..3056423 | + | 143 | Protein_3086 | hypothetical protein | - |
| NMK58_RS15790 (3056618) | 3056618..3056785 | - | 168 | WP_000216636.1 | DUF3927 family protein | - |
| NMK58_RS15795 (3056782) | 3056782..3057213 | - | 432 | WP_000466957.1 | tellurite resistance TerB family protein | - |
| NMK58_RS15815 (3057663) | 3057663..3058376 | - | 714 | WP_000301785.1 | helix-turn-helix domain-containing protein | - |
| NMK58_RS15820 (3058511) | 3058511..3058708 | - | 198 | WP_000917770.1 | hypothetical protein | - |
| NMK58_RS15825 (3058950) | 3058950..3059480 | - | 531 | WP_000640048.1 | DUF1133 family protein | - |
| NMK58_RS15830 (3059489) | 3059489..3059848 | - | 360 | WP_000904103.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NMK58_RS15835 (3059861) | 3059861..3060907 | - | 1047 | WP_001265113.1 | DUF968 domain-containing protein | - |
| NMK58_RS15840 (3060909) | 3060909..3061181 | - | 273 | WP_001342259.1 | hypothetical protein | - |
| NMK58_RS15845 (3061317) | 3061317..3061574 | + | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| NMK58_RS15850 (3061580) | 3061580..3061879 | + | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NMK58_RS15855 (3062084) | 3062084..3062428 | - | 345 | WP_032163036.1 | hypothetical protein | - |
| NMK58_RS15860 (3062762) | 3062762..3062940 | - | 179 | Protein_3098 | hypothetical protein | - |
| NMK58_RS15865 (3062942) | 3062942..3063889 | - | 948 | WP_032163038.1 | ead/Ea22-like family protein | - |
| NMK58_RS15870 (3063886) | 3063886..3064062 | - | 177 | WP_000753068.1 | hypothetical protein | - |
| NMK58_RS15875 (3064064) | 3064064..3064237 | - | 174 | WP_001224661.1 | hypothetical protein | - |
| NMK58_RS15880 (3064331) | 3064331..3064687 | - | 357 | WP_001497097.1 | hypothetical protein | - |
| NMK58_RS15885 (3064745) | 3064745..3065140 | - | 396 | WP_001118160.1 | DUF977 family protein | - |
| NMK58_RS15890 (3065156) | 3065156..3065926 | - | 771 | WP_032163040.1 | DUF1627 domain-containing protein | - |
| NMK58_RS15895 (3065948) | 3065948..3066694 | - | 747 | WP_045906934.1 | ATP-binding protein | - |
| NMK58_RS15900 (3066701) | 3066701..3067663 | - | 963 | WP_000095671.1 | helix-turn-helix domain-containing protein | - |
| NMK58_RS15905 (3067686) | 3067686..3068111 | - | 426 | WP_000693888.1 | toxin YdaT family protein | - |
| NMK58_RS15910 (3068095) | 3068095..3068376 | - | 282 | WP_000391950.1 | YdaS family helix-turn-helix protein | - |
| NMK58_RS15915 (3068477) | 3068477..3068896 | + | 420 | WP_000362153.1 | hypothetical protein | - |
| NMK58_RS15920 (3069162) | 3069162..3069314 | + | 153 | WP_001345283.1 | DUF1391 family protein | - |
| NMK58_RS15925 (3069326) | 3069326..3069964 | + | 639 | WP_000394548.1 | hypothetical protein | - |
| NMK58_RS15930 (3069965) | 3069965..3070174 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| NMK58_RS15935 (3070739) | 3070739..3070927 | + | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| NMK58_RS15940 (3070924) | 3070924..3071112 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| NMK58_RS15945 (3071346) | 3071346..3071711 | + | 366 | Protein_3115 | exonuclease | - |
| NMK58_RS15950 (3073143) | 3073143..3073667 | + | 525 | WP_001485795.1 | 3'-5' exonuclease | - |
| NMK58_RS15955 (3073740) | 3073740..3073991 | + | 252 | WP_000005551.1 | excisionase family protein | - |
| NMK58_RS15960 (3074011) | 3074011..3075306 | + | 1296 | WP_001206148.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NMK58_RS15965 (3075955) | 3075955..3076068 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NMK58_RS15970 (3076137) | 3076137..3076370 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NMK58_RS15975 (3076687) | 3076687..3077277 | + | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NMK58_RS15980 (3077375) | 3077375..3077950 | - | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| NMK58_RS15985 (3077950) | 3077950..3080910 | - | 2961 | WP_001448491.1 | prophage tail fiber N-terminal domain-containing protein | - |
| NMK58_RS15990 (3080975) | 3080975..3081574 | - | 600 | WP_001233114.1 | Outer membrane protein X | VF |
| NMK58_RS15995 (3081645) | 3081645..3085058 | - | 3414 | WP_000515505.1 | host specificity protein J | - |
| NMK58_RS16000 (3085119) | 3085119..3085766 | - | 648 | WP_000741589.1 | tail assembly protein | - |
| NMK58_RS16005 (3085664) | 3085664..3086407 | - | 744 | WP_000140707.1 | C40 family peptidase | - |
| NMK58_RS16010 (3086412) | 3086412..3087110 | - | 699 | WP_001152371.1 | phage minor tail protein L | - |
| NMK58_RS16015 (3087120) | 3087120..3087449 | - | 330 | WP_000447251.1 | phage tail protein | - |
| NMK58_RS16020 (3087449) | 3087449..3090514 | - | 3066 | WP_000372024.1 | phage tail tape measure protein | - |
| NMK58_RS16025 (3090486) | 3090486..3090815 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| NMK58_RS16030 (3090824) | 3090824..3091210 | - | 387 | WP_001341514.1 | phage minor tail protein G | - |
| NMK58_RS16035 (3091271) | 3091271..3092014 | - | 744 | WP_000211132.1 | Ig domain-containing protein | - |
| NMK58_RS16040 (3092025) | 3092025..3092426 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| NMK58_RS16045 (3092423) | 3092423..3093001 | - | 579 | WP_000677128.1 | phage tail protein | - |
| NMK58_RS16050 (3093013) | 3093013..3093288 | - | 276 | WP_001283148.1 | DNA breaking-rejoining protein | - |
| NMK58_RS16055 (3093281) | 3093281..3093604 | - | 324 | WP_001097041.1 | DUF2190 family protein | - |
| NMK58_RS16060 (3093691) | 3093691..3095718 | - | 2028 | WP_001136588.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| NMK58_RS16065 (3095663) | 3095663..3097171 | - | 1509 | WP_000985929.1 | phage portal protein | - |
| NMK58_RS16070 (3097171) | 3097171..3097383 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| NMK58_RS16075 (3097380) | 3097380..3099479 | - | 2100 | WP_000507036.1 | phage terminase large subunit family protein | - |
| NMK58_RS16080 (3099488) | 3099488..3100015 | - | 528 | WP_001389340.1 | DUF1441 family protein | - |
| NMK58_RS16085 (3100588) | 3100588..3100794 | - | 207 | WP_001031435.1 | hypothetical protein | - |
| NMK58_RS16090 (3101095) | 3101095..3101505 | + | 411 | WP_000035577.1 | DUF1398 domain-containing protein | - |
| NMK58_RS16095 (3101657) | 3101657..3101830 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NMK58_RS16100 (3102002) | 3102002..3102157 | - | 156 | WP_001309517.1 | protein YnfN | - |
| NMK58_RS16105 (3102237) | 3102237..3102302 | - | 66 | WP_122134696.1 | small protein YnfR | - |
| NMK58_RS16110 (3102305) | 3102305..3102493 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| NMK58_RS16115 (3102504) | 3102504..3102716 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NMK58_RS16120 (3103079) | 3103079..3103576 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NMK58_RS16125 (3103573) | 3103573..3104106 | - | 534 | WP_001092971.1 | lysozyme | - |
| NMK58_RS16130 (3104103) | 3104103..3104414 | - | 312 | WP_000189915.1 | YdfR family protein | - |
| NMK58_RS16135 (3104419) | 3104419..3104634 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NMK58_RS16140 (3104854) | 3104854..3105024 | + | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| NMK58_RS16145 (3105388) | 3105388..3105603 | - | 216 | WP_000066483.1 | cold shock-like protein CspB | - |
| NMK58_RS16150 (3105904) | 3105904..3106116 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NMK58_RS16155 (3106171) | 3106171..3106260 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| NMK58_RS16160 (3106538) | 3106538..3107290 | - | 753 | WP_001047133.1 | antitermination protein | - |
| NMK58_RS16165 (3107304) | 3107304..3108353 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| NMK58_RS16170 (3108355) | 3108355..3108633 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| NMK58_RS16175 (3108700) | 3108700..3108951 | - | 252 | WP_000980994.1 | protein Rem | - |
| NMK58_RS16180 (3109168) | 3109168..3109323 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NMK58_RS16185 (3109395) | 3109395..3109682 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NMK58_RS16190 (3109682) | 3109682..3109921 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NMK58_RS16195 (3109946) | 3109946..3110251 | + | 306 | WP_001326990.1 | protein YdfV | - |
| NMK58_RS16200 (3110454) | 3110454..3110786 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| NMK58_RS16205 (3111223) | 3111223..3111372 | - | 150 | WP_180302674.1 | ISNCY family transposase ISCARN112 | Transposase |
| NMK58_RS16210 (3111493) | 3111493..3112542 | - | 1050 | Protein_3168 | ISNCY family transposase ISCARN112 | Transposase |
| NMK58_RS16215 (3112597) | 3112597..3113016 | - | 420 | WP_001151195.1 | DUF977 family protein | - |
| NMK58_RS16220 (3113057) | 3113057..3114022 | - | 966 | WP_000054507.1 | hypothetical protein | - |
| NMK58_RS16225 (3114003) | 3114003..3114524 | - | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| NMK58_RS16230 (3114508) | 3114508..3114735 | - | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| NMK58_RS16235 (3114813) | 3114813..3115220 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| NMK58_RS16240 (3115413) | 3115413..3115568 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| NMK58_RS16245 (3115570) | 3115570..3116145 | + | 576 | WP_000347171.1 | hypothetical protein | - |
| NMK58_RS16250 (3116632) | 3116632..3116820 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NMK58_RS16255 (3116817) | 3116817..3117008 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| NMK58_RS16260 (3117102) | 3117102..3119573 | + | 2472 | WP_000048369.1 | exonuclease | - |
| NMK58_RS16265 (3119646) | 3119646..3119738 | + | 93 | Protein_3179 | excisionase family protein | - |
| NMK58_RS16270 (3119769) | 3119769..3121340 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| NMK58_RS16275 (3121360) | 3121360..3121707 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| NMK58_RS16280 (3121707) | 3121707..3122384 | - | 678 | WP_119187740.1 | IS66 family transposase ISCro1 | Transposase |
| NMK58_RS16285 (3122440) | 3122440..3122604 | + | 165 | Protein_3183 | excisionase family protein | - |
| NMK58_RS16290 (3122639) | 3122639..3123919 | + | 1281 | WP_000877011.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NMK58_RS16295 (3124107) | 3124107..3125126 | - | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| NMK58_RS16300 (3125138) | 3125138..3126352 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NMK58_RS16305 (3126558) | 3126558..3126884 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| NMK58_RS16310 (3127019) | 3127019..3127360 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NMK58_RS16315 (3127395) | 3127395..3127955 | + | 561 | WP_001138576.1 | spermidine N1-acetyltransferase | - |
| NMK58_RS16320 (3127958) | 3127958..3128668 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NMK58_RS16325 (3128776) | 3128776..3129081 | + | 306 | WP_001307224.1 | DUF1161 domain-containing protein | - |
| NMK58_RS16330 (3129280) | 3129280..3131705 | + | 2426 | Protein_3192 | dimethyl sulfoxide reductase subunit A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|