MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 83915 bp
Accession: NZ_CP100554 Location: 1..83915 Organism: Pseudomonas hydrolytica strain KHPS2 Replicon: plasmid unnamed
Accession: NZ_CP100554 Location: 1..83915 Organism: Pseudomonas hydrolytica strain KHPS2 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLY38_RS25445 (NLY38_25445) | 211..1608 | + | 1398 | WP_254348608.1 | hypothetical protein | VF |
| NLY38_RS25450 (NLY38_25450) | 1608..2654 | + | 1047 | WP_254348609.1 | Type IV secretion system protein VirB11 | VF |
| NLY38_RS25455 (NLY38_25455) | 2655..4418 | + | 1764 | WP_254348611.1 | Protein VirD4 | VF |
| NLY38_RS25460 (NLY38_25460) | 4642..4974 | + | 333 | WP_254348614.1 | hypothetical protein | - |
| NLY38_RS25465 (NLY38_25465) | 4998..5435 | + | 438 | WP_254348616.1 | hypothetical protein | - |
| NLY38_RS25470 (NLY38_25470) | 5642..5824 | + | 183 | WP_254348618.1 | hypothetical protein | - |
| NLY38_RS25475 (NLY38_25475) | 5824..6471 | + | 648 | WP_254348620.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| NLY38_RS25480 (NLY38_25480) | 6514..7014 | - | 501 | WP_254348622.1 | hypothetical protein | - |
| NLY38_RS25485 (NLY38_25485) | 7075..7740 | - | 666 | WP_254300366.1 | hypothetical protein | - |
| NLY38_RS25490 (NLY38_25490) | 7838..8776 | - | 939 | WP_254348624.1 | LysR family transcriptional regulator | - |
| NLY38_RS25495 (NLY38_25495) | 9017..9976 | + | 960 | WP_254348625.1 | aliphatic sulfonate ABC transporter substrate-binding protein | - |
| NLY38_RS25500 (NLY38_25500) | 9973..10458 | + | 486 | WP_254300361.1 | nucleoside deaminase | - |
| NLY38_RS25505 (NLY38_25505) | 10475..11110 | + | 636 | WP_254300359.1 | isochorismatase family cysteine hydrolase | - |
| NLY38_RS25510 (NLY38_25510) | 11107..11901 | + | 795 | WP_254348626.1 | ABC transporter permease | - |
| NLY38_RS25515 (NLY38_25515) | 11898..12725 | + | 828 | WP_254300349.1 | Aliphatic sulfonates import ATP-binding protein SsuB | VF |
| NLY38_RS25520 (NLY38_25520) | 12813..13274 | - | 462 | WP_254300347.1 | hypothetical protein | - |
| NLY38_RS25525 (NLY38_25525) | 13459..13827 | - | 369 | WP_254300345.1 | hypothetical protein | - |
| NLY38_RS25530 (NLY38_25530) | 14073..15623 | - | 1551 | WP_254348627.1 | IS66 family transposase ISPpu13 | Transposase |
| NLY38_RS25535 (NLY38_25535) | 15643..16002 | - | 360 | WP_058151328.1 | IS66 family transposase ISPpu15 | Transposase |
| NLY38_RS25540 (NLY38_25540) | 16478..16807 | - | 330 | WP_125836219.1 | lipoprotein | - |
| NLY38_RS25545 (NLY38_25545) | 16804..17184 | - | 381 | WP_254348628.1 | DNA binding protein | - |
| NLY38_RS25550 (NLY38_25550) | 17185..18435 | - | 1251 | WP_254348630.1 | zeta toxin family protein | - |
| NLY38_RS25555 (NLY38_25555) | 18534..18842 | - | 309 | WP_254348631.1 | hypothetical protein | - |
| NLY38_RS25560 (NLY38_25560) | 18940..23409 | - | 4470 | WP_254348632.1 | hypothetical protein | Relaxase |
| NLY38_RS25565 (NLY38_25565) | 23406..23819 | - | 414 | WP_254348633.1 | hypothetical protein | Relaxase |
| NLY38_RS25570 (NLY38_25570) | 24139..24555 | + | 417 | WP_254348634.1 | type IV secretory system conjugative DNA transfer family protein | - |
| NLY38_RS25575 (NLY38_25575) | 24567..25268 | + | 702 | WP_254348635.1 | StbB family protein | - |
| NLY38_RS25580 (NLY38_25580) | 25274..25867 | + | 594 | WP_254348637.1 | hypothetical protein | - |
| NLY38_RS25585 (NLY38_25585) | 25876..26172 | + | 297 | WP_254348640.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| NLY38_RS25590 (NLY38_25590) | 26234..26692 | + | 459 | WP_254348642.1 | hypothetical protein | - |
| NLY38_RS25595 (NLY38_25595) | 27265..27675 | - | 411 | WP_254348644.1 | hypothetical protein | - |
| NLY38_RS25600 (NLY38_25600) | 27740..28063 | - | 324 | WP_254348646.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| NLY38_RS25605 (NLY38_25605) | 28060..28422 | - | 363 | WP_254348648.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NLY38_RS25610 (NLY38_25610) | 28568..28831 | - | 264 | WP_254348650.1 | hypothetical protein | - |
| NLY38_RS25615 (NLY38_25615) | 28877..29428 | - | 552 | WP_254348652.1 | hypothetical protein | - |
| NLY38_RS25620 (NLY38_25620) | 29439..29669 | - | 231 | WP_254348654.1 | hypothetical protein | - |
| NLY38_RS25625 (NLY38_25625) | 30836..30979 | + | 144 | WP_254348656.1 | hypothetical protein | - |
| NLY38_RS25630 (NLY38_25630) | 30976..32748 | - | 1773 | WP_254348657.1 | DNA cytosine methyltransferase | - |
| NLY38_RS25635 (NLY38_25635) | 32745..32975 | - | 231 | WP_254348658.1 | hypothetical protein | - |
| NLY38_RS25640 (NLY38_25640) | 32989..33390 | - | 402 | WP_254348659.1 | hypothetical protein | - |
| NLY38_RS25645 (NLY38_25645) | 33563..33943 | - | 381 | WP_254348660.1 | hypothetical protein | - |
| NLY38_RS25650 (NLY38_25650) | 33993..34217 | - | 225 | WP_254348662.1 | YgdI/YgdR family lipoprotein | - |
| NLY38_RS25655 (NLY38_25655) | 34214..34468 | - | 255 | WP_254348664.1 | hypothetical protein | - |
| NLY38_RS25660 (NLY38_25660) | 34590..35039 | - | 450 | WP_254348666.1 | hypothetical protein | - |
| NLY38_RS25665 (NLY38_25665) | 35736..36092 | - | 357 | WP_254348668.1 | hypothetical protein | - |
| NLY38_RS25670 (NLY38_25670) | 36340..38379 | - | 2040 | Protein_46 | Tn3 family transposase TnpA_IS3000 | Transposase |
| NLY38_RS25675 (NLY38_25675) | 38436..39452 | + | 1017 | WP_114012834.1 | IS30 family transposase IS1394 | Transposase |
| NLY38_RS25680 (NLY38_25680) | 39478..40458 | - | 981 | Protein_48 | Tn3 family transposase TnpA_IS3000 | Transposase |
| NLY38_RS25685 (NLY38_25685) | 40603..41778 | + | 1176 | Protein_49 | glutamine synthetase family protein | - |
| NLY38_RS25690 (NLY38_25690) | 41860..43230 | + | 1371 | WP_254300329.1 | aspartate aminotransferase family protein | - |
| NLY38_RS25695 (NLY38_25695) | 43353..44438 | + | 1086 | WP_254300331.1 | polyamine ABC transporter substrate-binding protein | - |
| NLY38_RS25700 (NLY38_25700) | 44653..44919 | + | 267 | Protein_52 | spermidine/putrescine ABC transporter substrate-binding protein PotF | - |
| NLY38_RS25705 (NLY38_25705) | 45036..45719 | - | 684 | WP_254348671.1 | HupE/UreJ family protein | - |
| NLY38_RS25710 (NLY38_25710) | 45767..46813 | - | 1047 | WP_254300332.1 | arginase family protein | - |
| NLY38_RS25715 (NLY38_25715) | 46839..47912 | - | 1074 | WP_254348553.1 | agmatinase family protein | - |
| NLY38_RS25720 (NLY38_25720) | 47934..48320 | - | 387 | WP_254300334.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| NLY38_RS25725 (NLY38_25725) | 48330..49349 | - | 1020 | WP_254300335.1 | hydrogenase nickel incorporation protein HypB | - |
| NLY38_RS25730 (NLY38_25730) | 49352..50056 | - | 705 | WP_254348554.1 | TetR/AcrR family transcriptional regulator | - |
| NLY38_RS25735 (NLY38_25735) | 50757..50948 | + | 192 | WP_254348555.1 | hypothetical protein | - |
| NLY38_RS25740 (NLY38_25740) | 51083..52360 | + | 1278 | WP_254348556.1 | cytosine permease | - |
| NLY38_RS25745 (NLY38_25745) | 52516..53028 | + | 513 | WP_254300338.1 | XRE family transcriptional regulator | - |
| NLY38_RS25755 (NLY38_25755) | 54569..54964 | - | 396 | Protein_63 | IS110 family transposase ISMdi12 | Transposase |
| NLY38_RS25760 (NLY38_25760) | 55359..55964 | + | 606 | WP_254348559.1 | Tn3 family transposase TnpR_ISMpo10 | Transposase |
| NLY38_RS25765 (NLY38_25765) | 55982..56374 | + | 393 | Protein_65 | DUF4158 domain-containing protein | - |
| NLY38_RS25770 (NLY38_25770) | 56441..59482 | - | 3042 | WP_254348561.1 | Tn3 family transposase TnpA_IS3000 | Transposase |
| NLY38_RS25775 (NLY38_25775) | 59508..60050 | - | 543 | WP_254348563.1 | hypothetical protein | - |
| NLY38_RS25780 (NLY38_25780) | 60127..60597 | - | 471 | WP_254348564.1 | hypothetical protein | - |
| NLY38_RS25785 (NLY38_25785) | 60607..60921 | - | 315 | WP_254348567.1 | hypothetical protein | - |
| NLY38_RS25790 (NLY38_25790) | 60933..61097 | - | 165 | WP_254348568.1 | hypothetical protein | - |
| NLY38_RS25795 (NLY38_25795) | 61108..61524 | - | 417 | WP_254348570.1 | hypothetical protein | - |
| NLY38_RS25800 (NLY38_25800) | 62332..62622 | - | 291 | WP_254348572.1 | helix-turn-helix transcriptional regulator | - |
| NLY38_RS25805 (NLY38_25805) | 62632..63654 | - | 1023 | WP_254348574.1 | DNA-binding protein | - |
| NLY38_RS25810 (NLY38_25810) | 64834..65553 | + | 720 | WP_254348576.1 | replication initiation protein | - |
| NLY38_RS25815 (NLY38_25815) | 65814..67184 | + | 1371 | WP_034077125.1 | IS1182 family transposase ISCfr1 | Transposase |
| NLY38_RS25820 (NLY38_25820) | 67556..67855 | - | 300 | WP_254348578.1 | hypothetical protein | - |
| NLY38_RS25825 (NLY38_25825) | 68025..68381 | - | 357 | WP_254348580.1 | TrfB-related DNA-binding protein | - |
| NLY38_RS25830 (NLY38_25830) | 68450..69739 | - | 1290 | WP_254348581.1 | ParB/RepB/Spo0J family partition protein | - |
| NLY38_RS25835 (NLY38_25835) | 69739..70515 | - | 777 | WP_254348582.1 | ParA family protein | - |
| NLY38_RS25840 (NLY38_25840) | 70624..71436 | - | 813 | WP_254348583.1 | DUF3560 domain-containing protein | - |
| NLY38_RS25845 (NLY38_25845) | 71621..71848 | - | 228 | WP_254348584.1 | hypothetical protein | - |
| NLY38_RS25850 (NLY38_25850) | 71861..72163 | - | 303 | WP_254348585.1 | hypothetical protein | - |
| NLY38_RS25855 (NLY38_25855) | 72170..72499 | - | 330 | WP_254348587.1 | hypothetical protein | - |
| NLY38_RS25860 (NLY38_25860) | 72511..73017 | - | 507 | WP_254348588.1 | hypothetical protein | - |
| NLY38_RS25865 (NLY38_25865) | 73860..74225 | + | 366 | WP_254348589.1 | hypothetical protein | - |
| NLY38_RS25870 (NLY38_25870) | 74239..76266 | + | 2028 | WP_254348590.1 | type I DNA topoisomerase | - |
| NLY38_RS25875 (NLY38_25875) | 76545..76784 | - | 240 | WP_254348591.1 | helix-turn-helix domain-containing protein | - |
| NLY38_RS25880 (NLY38_25880) | 76894..77556 | + | 663 | WP_254348592.1 | hypothetical protein | VF |
| NLY38_RS25885 (NLY38_25885) | 77580..77894 | + | 315 | WP_254348593.1 | hypothetical protein | - |
| NLY38_RS25890 (NLY38_25890) | 77897..78265 | + | 369 | WP_254348596.1 | hypothetical protein | - |
| NLY38_RS25895 (NLY38_25895) | 78222..80609 | + | 2388 | WP_254348598.1 | hypothetical protein | - |
| NLY38_RS25900 (NLY38_25900) | 80683..81387 | + | 705 | WP_254348600.1 | type IV secretion system protein | - |
| NLY38_RS25905 (NLY38_25905) | 81393..82370 | + | 978 | WP_254348602.1 | type IV secretion system protein | - |
| NLY38_RS25910 (NLY38_25910) | 82414..82560 | + | 147 | WP_254348604.1 | hypothetical protein | - |
| NLY38_RS25915 (NLY38_25915) | 82557..83330 | + | 774 | WP_254348606.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|