MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 65077 bp
Accession: NZ_CP100553 Location: 3058117..3123193 Organism: Pseudomonas hydrolytica strain KHPS2 Replicon: chromosome
Accession: NZ_CP100553 Location: 3058117..3123193 Organism: Pseudomonas hydrolytica strain KHPS2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLY38_RS14210 (NLY38_14210) | 3054079..3054813 | + | 735 | WP_195883290.1 | SDR family oxidoreductase | - |
| NLY38_RS14215 (NLY38_14215) | 3054889..3055098 | + | 210 | WP_195883291.1 | 4-oxalocrotonate tautomerase family protein | - |
| NLY38_RS14220 (NLY38_14220) | 3055272..3055769 | - | 498 | WP_195883297.1 | winged helix-turn-helix transcriptional regulator | - |
| NLY38_RS14225 (NLY38_14225) | 3055984..3056610 | + | 627 | WP_195883292.1 | isochorismatase family cysteine hydrolase | - |
| NLY38_RS14230 (NLY38_14230) | 3056647..3057831 | + | 1185 | WP_254347816.1 | MFS transporter | - |
| NLY38_RS14235 (NLY38_14235) | 3057950..3058102 | + | 153 | Protein_2797 | site-specific integrase | - |
| NLY38_RS14240 (NLY38_14240) | 3058600..3059562 | + | 963 | WP_124148963.1 | hypothetical protein | - |
| NLY38_RS14245 (NLY38_14245) | 3059565..3059987 | - | 423 | WP_124148962.1 | DNA mismatch endonuclease Vsr | - |
| NLY38_RS14250 (NLY38_14250) | 3060017..3061615 | + | 1599 | WP_254347818.1 | DNA cytosine methyltransferase | - |
| NLY38_RS14255 (NLY38_14255) | 3061691..3063133 | + | 1443 | WP_124148966.1 | ATP-binding protein | - |
| NLY38_RS14260 (NLY38_14260) | 3063147..3065990 | + | 2844 | WP_124148960.1 | Z1 domain-containing protein | - |
| NLY38_RS14265 (NLY38_14265) | 3065974..3066990 | + | 1017 | WP_124148959.1 | PD-(D/E)XK motif protein | - |
| NLY38_RS14270 (NLY38_14270) | 3066990..3068798 | + | 1809 | WP_124148958.1 | ISNCY family transposase ISPa4 | Transposase |
| NLY38_RS14275 (NLY38_14275) | 3069250..3069519 | + | 270 | WP_254347821.1 | hypothetical protein | - |
| NLY38_RS14280 (NLY38_14280) | 3069516..3069863 | + | 348 | WP_254347823.1 | LasR-specific antiactivator QslA | - |
| NLY38_RS14285 (NLY38_14285) | 3070359..3070865 | + | 507 | WP_254347825.1 | DNA repair protein RadC | - |
| NLY38_RS14290 (NLY38_14290) | 3071159..3071677 | + | 519 | WP_254347826.1 | PAAR domain-containing protein | - |
| NLY38_RS14295 (NLY38_14295) | 3071674..3072381 | + | 708 | WP_254347827.1 | VRR-NUC domain-containing protein | - |
| NLY38_RS14300 (NLY38_14300) | 3072397..3073485 | + | 1089 | WP_254347828.1 | DUF3396 domain-containing protein | - |
| NLY38_RS14305 (NLY38_14305) | 3073513..3074235 | + | 723 | WP_254347829.1 | Imm52 family immunity protein | - |
| NLY38_RS14310 (NLY38_14310) | 3074320..3075132 | - | 813 | WP_143511068.1 | NYN domain-containing protein | - |
| NLY38_RS14315 (NLY38_14315) | 3075425..3076723 | - | 1299 | WP_254347830.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| NLY38_RS14320 (NLY38_14320) | 3076696..3077139 | - | 444 | WP_254347832.1 | S24 family peptidase | - |
| NLY38_RS14325 (NLY38_14325) | 3077406..3077840 | + | 435 | WP_254347833.1 | hypothetical protein | - |
| NLY38_RS14330 (NLY38_14330) | 3077916..3081653 | - | 3738 | WP_195882999.1 | hypothetical protein | - |
| NLY38_RS14335 (NLY38_14335) | 3081990..3083024 | - | 1035 | WP_254347834.1 | diguanylate cyclase | - |
| NLY38_RS14340 (NLY38_14340) | 3083363..3083908 | - | 546 | WP_254347835.1 | Methyl-accepting chemotaxis protein McpG | VF |
| NLY38_RS14345 (NLY38_14345) | 3084255..3084746 | - | 492 | WP_254347836.1 | hypothetical protein | - |
| NLY38_RS14350 (NLY38_14350) | 3084841..3085347 | - | 507 | WP_254347837.1 | hypothetical protein | - |
| NLY38_RS14355 (NLY38_14355) | 3085529..3086050 | + | 522 | WP_254347838.1 | GNAT family N-acetyltransferase | - |
| NLY38_RS14360 (NLY38_14360) | 3086335..3086847 | + | 513 | WP_254347839.1 | antirestriction protein ArdA | - |
| NLY38_RS14365 (NLY38_14365) | 3087440..3087721 | + | 282 | WP_162884254.1 | helix-turn-helix domain-containing protein | - |
| NLY38_RS14370 (NLY38_14370) | 3087733..3088560 | + | 828 | WP_254347840.1 | replication initiator protein A | - |
| NLY38_RS14375 (NLY38_14375) | 3088805..3089443 | + | 639 | WP_254347841.1 | Chromosome-partitioning ATPase Soj | VF |
| NLY38_RS14380 (NLY38_14380) | 3089440..3089682 | + | 243 | WP_254347842.1 | hypothetical protein | - |
| NLY38_RS14385 (NLY38_14385) | 3089679..3090206 | + | 528 | WP_254347843.1 | S26 family signal peptidase | - |
| NLY38_RS14390 (NLY38_14390) | 3090558..3092507 | + | 1950 | WP_254347846.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| NLY38_RS14395 (NLY38_14395) | 3092525..3093379 | - | 855 | WP_014596883.1 | helix-turn-helix transcriptional regulator | - |
| NLY38_RS14400 (NLY38_14400) | 3093536..3094768 | + | 1233 | WP_014596884.1 | 5-aminolevulinate synthase | - |
| NLY38_RS14405 (NLY38_14405) | 3094770..3095273 | + | 504 | WP_014596885.1 | GNAT family N-acetyltransferase | - |
| NLY38_RS14410 (NLY38_14410) | 3095270..3096340 | + | 1071 | WP_254347848.1 | Gfo/Idh/MocA family oxidoreductase | - |
| NLY38_RS14415 (NLY38_14415) | 3096363..3098216 | + | 1854 | WP_254347851.1 | Asparagine synthetase [glutamine-hydrolyzing] 3 | VF |
| NLY38_RS14420 (NLY38_14420) | 3098303..3099502 | + | 1200 | WP_254347852.1 | MFS transporter | - |
| NLY38_RS14425 (NLY38_14425) | 3099516..3100442 | + | 927 | WP_254347853.1 | LysR family transcriptional regulator | - |
| NLY38_RS14430 (NLY38_14430) | 3100600..3100944 | + | 345 | WP_254347854.1 | toxin | Toxin Detail |
| NLY38_RS14435 (NLY38_14435) | 3100941..3101249 | + | 309 | WP_074879837.1 | transcriptional regulator | Antitoxin Detail |
| NLY38_RS14440 (NLY38_14440) | 3101608..3102120 | + | 513 | WP_254347855.1 | hypothetical protein | - |
| NLY38_RS14445 (NLY38_14445) | 3102117..3102491 | + | 375 | WP_254347856.1 | hypothetical protein | - |
| NLY38_RS14450 (NLY38_14450) | 3102481..3103176 | + | 696 | WP_254347858.1 | hypothetical protein | - |
| NLY38_RS14455 (NLY38_14455) | 3103238..3103627 | + | 390 | WP_254347860.1 | hypothetical protein | - |
| NLY38_RS14460 (NLY38_14460) | 3103726..3105345 | + | 1620 | WP_254347862.1 | MBL fold metallo-hydrolase | - |
| NLY38_RS14465 (NLY38_14465) | 3105701..3107692 | + | 1992 | WP_254347864.1 | Conjugal transfer protein TraG | VF |
| NLY38_RS14470 (NLY38_14470) | 3107689..3108123 | + | 435 | WP_254347866.1 | CopG family transcriptional regulator | - |
| NLY38_RS14475 (NLY38_14475) | 3108183..3109151 | + | 969 | WP_254348510.1 | hypothetical protein | VF |
| NLY38_RS14480 (NLY38_14480) | 3109177..3109464 | + | 288 | WP_232106360.1 | TrbC/VirB2 family protein | - |
| NLY38_RS14485 (NLY38_14485) | 3109461..3109733 | + | 273 | WP_254347868.1 | VirB3 family type IV secretion system protein | - |
| NLY38_RS14490 (NLY38_14490) | 3109744..3112173 | + | 2430 | WP_254347870.1 | conjugal transfer protein TrbE | - |
| NLY38_RS14495 (NLY38_14495) | 3112170..3112904 | + | 735 | WP_254347871.1 | P-type conjugative transfer protein TrbJ | - |
| NLY38_RS14500 (NLY38_14500) | 3112917..3113102 | + | 186 | WP_254347872.1 | hypothetical protein | - |
| NLY38_RS14505 (NLY38_14505) | 3113099..3114259 | + | 1161 | WP_254347873.1 | P-type conjugative transfer protein TrbL | - |
| NLY38_RS14510 (NLY38_14510) | 3114272..3114979 | + | 708 | WP_254347874.1 | conjugal transfer protein TrbF | - |
| NLY38_RS14515 (NLY38_14515) | 3114976..3115962 | + | 987 | WP_254347875.1 | P-type conjugative transfer protein TrbG | - |
| NLY38_RS14520 (NLY38_14520) | 3115965..3117227 | + | 1263 | WP_254347876.1 | TrbI/VirB10 family protein | - |
| NLY38_RS14525 (NLY38_14525) | 3117224..3117457 | + | 234 | WP_254347878.1 | DUF2274 domain-containing protein | - |
| NLY38_RS14530 (NLY38_14530) | 3117552..3117830 | + | 279 | WP_254347880.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NLY38_RS14535 (NLY38_14535) | 3117848..3118135 | + | 288 | WP_254347882.1 | HigA family addiction module antitoxin | - |
| NLY38_RS14540 (NLY38_14540) | 3118433..3119629 | - | 1197 | WP_212631524.1 | hypothetical protein | VF |
| NLY38_RS14545 (NLY38_14545) | 3119629..3119880 | - | 252 | WP_074680694.1 | helix-turn-helix domain-containing protein | - |
| NLY38_RS14550 (NLY38_14550) | 3120166..3121371 | - | 1206 | WP_254347884.1 | hypothetical protein | - |
| NLY38_RS14555 (NLY38_14555) | 3121664..3121900 | - | 237 | WP_254348527.1 | hypothetical protein | - |
| NLY38_RS14560 (NLY38_14560) | 3121799..3122065 | + | 267 | WP_237705708.1 | hypothetical protein | - |
| NLY38_RS14565 (NLY38_14565) | 3121951..3123135 | + | 1185 | WP_254348511.1 | hypothetical protein ; Integrase | Integrase |
| NLY38_RS14575 (NLY38_14575) | 3123361..3123717 | - | 357 | WP_003243416.1 | MerR family transcriptional regulator | - |
| NLY38_RS14580 (NLY38_14580) | 3123698..3124000 | - | 303 | WP_003243414.1 | integration host factor subunit alpha | - |
| NLY38_RS14585 (NLY38_14585) | 3124004..3126382 | - | 2379 | WP_195881608.1 | phenylalanine--tRNA ligase subunit beta | - |
| NLY38_RS14590 (NLY38_14590) | 3126427..3127443 | - | 1017 | WP_003243410.1 | phenylalanine--tRNA ligase subunit alpha | - |
| NLY38_RS14595 (NLY38_14595) | 3127540..3127896 | - | 357 | WP_003243409.1 | 50S ribosomal protein L20 | - |
| NLY38_RS14600 (NLY38_14600) | 3127926..3128120 | - | 195 | WP_003243407.1 | 50S ribosomal protein L35 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|