NZ_CP1005511207155..1382727

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 175573 bp
Accession: NZ_CP100551        Location: 1207155..1382727         Organism: Pseudomonas sp. KHPS1       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NLY39_RS05425 (NLY39_05425) 1202678..1203211 + 534 WP_003246762.1 cupredoxin family protein -
NLY39_RS05430 (NLY39_05430) 1203380..1203718 + 339 Protein_1072 ATP-binding domain-containing protein -
NLY39_RS05435 (NLY39_05435) 1203819..1204253 - 435 WP_008175821.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
NLY39_RS05440 (NLY39_05440) 1204352..1205248 + 897 WP_008928737.1 cation transporter -
NLY39_RS05445 (NLY39_05445) 1205391..1206152 + 762 WP_009686175.1 ZIP family metal transporter -
NLY39_RS05450 (NLY39_05450) 1206447..1207886 + 1440 WP_148100097.1 apolipoprotein N-acyltransferase -
NLY39_RS05455 (NLY39_05455) 1207940..1208404 + 465 WP_254299623.1 signal peptidase II -
NLY39_RS05460 (NLY39_05460) 1208587..1209390 - 804 WP_013983804.1 IS21-like element ISPst3 family helper ATPase IstB -
NLY39_RS05465 (NLY39_05465) 1209383..1210882 - 1500 WP_125836939.1 IS21-like element ISPst3 family transposase -
NLY39_RS05470 (NLY39_05470) 1210975..1211157 - 183 WP_254299625.1 hypothetical protein -
NLY39_RS05475 (NLY39_05475) 1211205..1212015 + 811 Protein_1081 ISL3 family transposase -
NLY39_RS05480 (NLY39_05480) 1212200..1212406 + 207 WP_003139535.1 co-regulatory protein PtrA N-terminal domain-containing protein -
NLY39_RS05485 (NLY39_05485) 1212600..1214414 + 1815 WP_096827198.1 copper resistance system multicopper oxidase -
NLY39_RS05490 (NLY39_05490) 1214427..1214741 + 315 WP_096827197.1 hypothetical protein -
NLY39_RS05495 (NLY39_05495) 1214731..1215930 + 1200 WP_096827196.1 copper resistance protein B -
NLY39_RS05500 (NLY39_05500) 1215940..1216782 + 843 WP_096827195.1 cytochrome c -
NLY39_RS05505 (NLY39_05505) 1216772..1217215 + 444 WP_096827194.1 DUF411 domain-containing protein -
NLY39_RS05510 (NLY39_05510) 1217387..1218712 - 1326 WP_096827193.1 OprD family porin -
NLY39_RS05515 (NLY39_05515) 1218867..1219199 - 333 WP_096827192.1 DUF2790 domain-containing protein -
NLY39_RS05520 (NLY39_05520) 1219346..1219828 - 483 Protein_1090 efflux RND transporter permease subunit -
NLY39_RS05525 (NLY39_05525) 1219794..1220069 + 276 WP_079279988.1 type II toxin-antitoxin system RelE/ParE family toxin -
NLY39_RS05530 (NLY39_05530) 1220139..1220312 - 174 WP_177432948.1 hypothetical protein -
NLY39_RS05535 (NLY39_05535) 1220323..1220820 - 498 WP_034019467.1 DNA repair protein RadC -
NLY39_RS05540 (NLY39_05540) 1220792..1221742 - 951 WP_096827191.1 hydrolase or metal-binding protein -
NLY39_RS05545 (NLY39_05545) 1221835..1222839 - 1005 WP_096827190.1 YqaJ viral recombinase family protein -
NLY39_RS05550 (NLY39_05550) 1222914..1223882 - 969 WP_075801287.1 DUF932 domain-containing protein -
NLY39_RS05555 (NLY39_05555) 1223980..1224252 - 273 WP_174892493.1 hypothetical protein -
NLY39_RS05560 (NLY39_05560) 1224504..1225163 - 660 WP_058192530.1 hypothetical protein -
NLY39_RS05565 (NLY39_05565) 1225176..1225910 - 735 WP_096827189.1 HupE/UreJ family protein -
NLY39_RS05570 (NLY39_05570) 1225958..1226317 - 360 WP_058192533.1 hypothetical protein -
NLY39_RS05575 (NLY39_05575) 1226434..1226724 + 291 WP_058192535.1 metal-sensing transcriptional repressor -
NLY39_RS05580 (NLY39_05580) 1226755..1227105 + 351 WP_058192536.1 DUF3147 family protein -
NLY39_RS05585 (NLY39_05585) 1227260..1227592 - 333 Protein_1103 tyrosine-type recombinase/integrase -
NLY39_RS05590 (NLY39_05590) 1227871..1228698 + 828 WP_003118432.1 phosphonate ABC transporter ATP-binding protein -
NLY39_RS05595 (NLY39_05595) 1228695..1229558 + 864 WP_010466255.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
NLY39_RS05600 (NLY39_05600) 1229567..1230394 + 828 WP_010466252.1 phosphonate ABC transporter, permease protein PhnE -
NLY39_RS05605 (NLY39_05605) 1230403..1231413 + 1011 WP_003118429.1 phosphonate dehydrogenase PtxD -
NLY39_RS05610 (NLY39_05610) 1231407..1232276 + 870 WP_096827188.1 LysR family transcriptional regulator -
NLY39_RS05615 (NLY39_05615) 1232385..1232707 + 323 Protein_1109 transposase -
NLY39_RS05620 (NLY39_05620) 1232706..1233088 - 383 Protein_1110 transposase -
NLY39_RS05625 (NLY39_05625) 1233262..1235028 - 1767 WP_177432944.1 protein-disulfide reductase DsbD -
NLY39_RS05630 (NLY39_05630) 1235181..1235639 - 459 WP_096827186.1 DUF411 domain-containing protein -
NLY39_RS05635 (NLY39_05635) 1235665..1235937 - 273 WP_003280450.1 heavy-metal-associated domain-containing protein -
NLY39_RS05640 (NLY39_05640) 1236012..1238267 - 2256 WP_232460414.1 heavy metal translocating P-type ATPase -
NLY39_RS05645 (NLY39_05645) 1238540..1238890 - 351 Protein_1115 TraI domain-containing protein -
NLY39_RS05650 (NLY39_05650) 1239018..1239683 + 666 WP_198402222.1 LysR substrate-binding domain-containing protein -
NLY39_RS05655 (NLY39_05655) 1239746..1241002 - 1257 WP_096827184.1 integrase domain-containing protein -
NLY39_RS05660 (NLY39_05660) 1241562..1242887 + 1326 WP_254299627.1 HipA domain-containing protein Toxin Detail
NLY39_RS05665 (NLY39_05665) 1242887..1243153 + 267 WP_003459718.1 helix-turn-helix transcriptional regulator Antitoxin Detail
NLY39_RS05670 (NLY39_05670) 1243202..1243987 + 786 WP_254299629.1 inositol monophosphatase family protein -
NLY39_RS05675 (NLY39_05675) 1244094..1244207 + 114 Protein_1121 transposase -
NLY39_RS05680 (NLY39_05680) 1244399..1244743 + 345 WP_124187315.1 IS66 family insertion sequence element accessory protein TnpB -
NLY39_RS05685 (NLY39_05685) 1244779..1246287 + 1509 WP_073625071.1 IS66 family transposase -
NLY39_RS05690 (NLY39_05690) 1246291..1246869 + 579 WP_003291613.1 plasmid pRiA4b ORF-3 family protein -
NLY39_RS05695 (NLY39_05695) 1247179..1248726 - 1548 WP_254298277.1 IS66 family transposase -
NLY39_RS05700 (NLY39_05700) 1248808..1249143 - 336 WP_132764522.1 IS66 family insertion sequence element accessory protein TnpB -
NLY39_RS05705 (NLY39_05705) 1249140..1249472 - 333 WP_003462815.1 transposase -
NLY39_RS05710 (NLY39_05710) 1249648..1250991 - 1344 WP_254299631.1 DUF1302 domain-containing protein -
NLY39_RS05715 (NLY39_05715) 1251433..1252173 - 741 WP_058173908.1 hypothetical protein -
NLY39_RS05720 (NLY39_05720) 1252291..1253838 - 1548 WP_254298277.1 IS66 family transposase -
NLY39_RS05725 (NLY39_05725) 1253920..1254255 - 336 WP_132764522.1 IS66 family insertion sequence element accessory protein TnpB -
NLY39_RS05730 (NLY39_05730) 1254252..1254584 - 333 WP_003462815.1 transposase -
NLY39_RS05735 (NLY39_05735) 1254626..1255246 - 621 WP_254299633.1 hypothetical protein -
NLY39_RS05740 (NLY39_05740) 1255649..1256341 - 693 WP_021219117.1 SDR family NAD(P)-dependent oxidoreductase -
NLY39_RS05745 (NLY39_05745) 1256554..1257780 + 1227 WP_254299634.1 sterol desaturase family protein -
NLY39_RS05750 (NLY39_05750) 1257777..1258349 + 573 WP_021219115.1 hypothetical protein -
NLY39_RS05755 (NLY39_05755) 1258440..1259147 + 708 WP_003090707.1 Crp/Fnr family transcriptional regulator -
NLY39_RS05760 (NLY39_05760) 1259586..1260425 - 840 WP_254299635.1 hypothetical protein -
NLY39_RS05765 (NLY39_05765) 1260627..1261619 - 993 WP_254299637.1 WYL domain-containing protein -
NLY39_RS05770 (NLY39_05770) 1261657..1262565 + 909 WP_254299639.1 tetratricopeptide repeat protein -
NLY39_RS05775 (NLY39_05775) 1262642..1263550 + 909 WP_254299640.1 hypothetical protein -
NLY39_RS05780 (NLY39_05780) 1263561..1264154 + 594 WP_254299642.1 hypothetical protein -
NLY39_RS05785 (NLY39_05785) 1264211..1266838 + 2628 WP_254299644.1 PD-(D/E)XK nuclease family protein -
NLY39_RS05790 (NLY39_05790) 1266853..1270041 + 3189 WP_254299646.1 UvrD-helicase domain-containing protein -
NLY39_RS05795 (NLY39_05795) 1270809..1272356 - 1548 WP_254298277.1 IS66 family transposase -
NLY39_RS05800 (NLY39_05800) 1272438..1272773 - 336 WP_132764522.1 IS66 family insertion sequence element accessory protein TnpB -
NLY39_RS05805 (NLY39_05805) 1272770..1273102 - 333 WP_003462815.1 transposase -
NLY39_RS05810 (NLY39_05810) 1273359..1274157 - 799 Protein_1148 IS5 family transposase -
NLY39_RS05815 (NLY39_05815) 1274466..1275575 + 1110 WP_171885376.1 BMP family ABC transporter substrate-binding protein -
NLY39_RS05820 (NLY39_05820) 1275579..1276691 + 1113 WP_031693781.1 ABC transporter permease -
NLY39_RS05825 (NLY39_05825) 1276684..1277604 + 921 WP_254299648.1 ABC transporter permease -
NLY39_RS05830 (NLY39_05830) 1277616..1278623 + 1008 WP_003459757.1 formamidase -
NLY39_RS05835 (NLY39_05835) 1278629..1279318 + 690 WP_031693779.1 isochorismatase family cysteine hydrolase -
NLY39_RS05840 (NLY39_05840) 1279321..1280868 + 1548 WP_003459761.1 ABC transporter ATP-binding protein -
NLY39_RS05845 (NLY39_05845) 1280865..1281539 + 675 WP_003459764.1 isochorismatase family cysteine hydrolase -
NLY39_RS05850 (NLY39_05850) 1281536..1281931 + 396 WP_003459767.1 oxalurate catabolism protein HpxZ -
NLY39_RS05855 (NLY39_05855) 1281947..1282633 + 687 WP_039964396.1 GntR family transcriptional regulator -
NLY39_RS05860 (NLY39_05860) 1282647..1283738 - 1092 WP_003459769.1 ring-opening amidohydrolase -
NLY39_RS05865 (NLY39_05865) 1283775..1284200 - 426 WP_003459770.1 DUF3830 family protein -
NLY39_RS05870 (NLY39_05870) 1284232..1284834 - 603 WP_003459771.1 TIGR00730 family Rossman fold protein -
NLY39_RS05875 (NLY39_05875) 1284850..1285611 - 762 WP_003459772.1 ABC transporter permease -
NLY39_RS05880 (NLY39_05880) 1285608..1286492 - 885 WP_003459774.1 ABC transporter ATP-binding protein -
NLY39_RS05885 (NLY39_05885) 1286547..1287995 - 1449 WP_003459776.1 allantoinase AllB -
NLY39_RS05890 (NLY39_05890) 1288006..1288797 - 792 WP_003459778.1 SDR family NAD(P)-dependent oxidoreductase -
NLY39_RS05895 (NLY39_05895) 1288817..1289866 - 1050 WP_003459780.1 ABC transporter substrate-binding protein -
NLY39_RS05900 (NLY39_05900) 1289869..1290723 - 855 WP_156157184.1 isochorismatase family cysteine hydrolase -
NLY39_RS05905 (NLY39_05905) 1290987..1291886 + 900 WP_003459784.1 LysR family transcriptional regulator -
NLY39_RS05910 (NLY39_05910) 1292200..1292337 + 138 WP_156157183.1 hypothetical protein -
NLY39_RS05915 (NLY39_05915) 1292612..1293481 + 870 WP_254299650.1 site-specific integrase -
NLY39_RS05920 (NLY39_05920) 1293387..1293614 - 228 WP_254299652.1 DUF4113 domain-containing protein -
NLY39_RS05925 (NLY39_05925) 1293724..1294350 + 627 WP_254299654.1 HAD family hydrolase -
NLY39_RS05930 (NLY39_05930) 1294500..1294763 - 264 Protein_1172 IS3 family transposase -
NLY39_RS05935 (NLY39_05935) 1294775..1295794 - 1020 WP_254299656.1 WYL domain-containing protein -
NLY39_RS05940 (NLY39_05940) 1295933..1298104 - 2172 WP_254299657.1 ATP-binding protein -
NLY39_RS05945 (NLY39_05945) 1298406..1298798 - 393 WP_254299660.1 hypothetical protein -
NLY39_RS05950 (NLY39_05950) 1298908..1299783 - 876 WP_254299662.1 WYL domain-containing protein -
NLY39_RS05955 (NLY39_05955) 1299957..1300202 + 246 WP_254299664.1 hypothetical protein -
NLY39_RS05960 (NLY39_05960) 1300278..1300919 + 642 WP_254299667.1 peptidase M15 -
NLY39_RS05965 (NLY39_05965) 1301163..1303079 + 1917 WP_254299668.1 class I SAM-dependent DNA methyltransferase -
NLY39_RS05970 (NLY39_05970) 1303225..1304331 + 1107 WP_254299670.1 restriction endonuclease subunit S -
NLY39_RS05975 (NLY39_05975) 1304321..1306162 + 1842 WP_013983900.1 AAA family ATPase -
NLY39_RS05980 (NLY39_05980) 1306168..1307466 + 1299 WP_254299671.1 McrC family protein -
NLY39_RS05985 (NLY39_05985) 1307508..1312280 + 4773 WP_254299672.1 DUF3320 domain-containing protein -
NLY39_RS05990 (NLY39_05990) 1312365..1315466 + 3102 WP_254299673.1 type I restriction endonuclease subunit R -
NLY39_RS05995 (NLY39_05995) 1316791..1318062 - 1272 WP_254299675.1 tyrosine-type recombinase/integrase -
NLY39_RS06000 (NLY39_06000) 1318219..1320672 - 2454 WP_254299676.1 site-specific integrase -
NLY39_RS06010 (NLY39_06010) 1321260..1324175 + 2916 WP_254299677.1 ATP-binding protein -
NLY39_RS06015 (NLY39_06015) 1324192..1324437 - 246 WP_003241519.1 hypothetical protein -
NLY39_RS06020 (NLY39_06020) 1324641..1326494 - 1854 WP_254299678.1 DUF4105 domain-containing protein -
NLY39_RS06025 (NLY39_06025) 1326638..1326949 + 312 WP_003241522.1 TraR/DksA family transcriptional regulator -
NLY39_RS06030 (NLY39_06030) 1326942..1328582 - 1641 WP_003241524.1 cation:proton antiporter -
NLY39_RS06035 (NLY39_06035) 1328725..1331214 + 2490 WP_254299679.1 ATP-binding protein -
NLY39_RS06040 (NLY39_06040) 1331380..1331733 + 354 WP_003241528.1 hypothetical protein -
NLY39_RS06045 (NLY39_06045) 1331887..1332381 + 495 WP_003241530.1 TIGR00645 family protein -
NLY39_RS06050 (NLY39_06050) 1332523..1332825 + 303 WP_003241532.1 DUF6482 family protein -
NLY39_RS06055 (NLY39_06055) 1332837..1334399 + 1563 WP_254300190.1 cryptochrome/photolyase family protein -
NLY39_RS06060 (NLY39_06060) 1334396..1334560 + 165 WP_096827180.1 DUF2256 domain-containing protein -
NLY39_RS06065 (NLY39_06065) 1334631..1335260 + 630 WP_003241537.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
NLY39_RS06070 (NLY39_06070) 1335420..1335647 - 228 WP_003241539.1 hypothetical protein -
NLY39_RS06075 (NLY39_06075) 1335855..1338908 - 3054 WP_254299680.1 multidrug efflux RND transporter permease subunit -
NLY39_RS06080 (NLY39_06080) 1339110..1340255 - 1146 WP_012017856.1 efflux RND transporter periplasmic adaptor subunit -
NLY39_RS06085 (NLY39_06085) 1340397..1342019 - 1623 WP_254299681.1 methyl-accepting chemotaxis protein -
NLY39_RS06090 (NLY39_06090) 1342331..1343851 - 1521 WP_129483463.1 tripartite tricarboxylate transporter permease -
NLY39_RS06095 (NLY39_06095) 1343861..1344373 - 513 WP_254299682.1 tripartite tricarboxylate transporter TctB family protein -
NLY39_RS06100 (NLY39_06100) 1344440..1345417 - 978 WP_254299684.1 tripartite tricarboxylate transporter substrate binding protein -
NLY39_RS06105 (NLY39_06105) 1345452..1346846 - 1395 WP_012017861.1 enolase C-terminal domain-like protein -
NLY39_RS06110 (NLY39_06110) 1347356..1348267 + 912 WP_148117598.1 5-dehydro-4-deoxyglucarate dehydratase -
NLY39_RS06115 (NLY39_06115) 1348378..1349727 + 1350 WP_254299690.1 glucarate dehydratase -
NLY39_RS06120 (NLY39_06120) 1349877..1351217 + 1341 WP_254299691.1 MFS transporter -
NLY39_RS06125 (NLY39_06125) 1351240..1352796 + 1557 WP_254299692.1 galactarate dehydratase -
NLY39_RS06130 (NLY39_06130) 1352810..1353751 + 942 WP_254299693.1 2-hydroxyacid dehydrogenase -
NLY39_RS06135 (NLY39_06135) 1353955..1354551 - 597 WP_254299695.1 NAD(P)-binding domain-containing protein -
NLY39_RS06140 (NLY39_06140) 1354615..1355364 - 750 WP_254299697.1 3-oxoacyl-ACP reductase family protein -
NLY39_RS06145 (NLY39_06145) 1355593..1356519 + 927 WP_096827167.1 LysR family transcriptional regulator -
NLY39_RS06150 (NLY39_06150) 1356589..1357518 + 930 WP_003241563.1 ABC transporter ATP-binding protein -
NLY39_RS06155 (NLY39_06155) 1357515..1358276 + 762 WP_254299699.1 ABC transporter permease -
NLY39_RS06160 (NLY39_06160) 1358362..1358754 - 393 WP_003241568.1 protease inhibitor I42 family protein -
NLY39_RS06165 (NLY39_06165) 1358842..1361238 - 2397 WP_012017868.1 endopeptidase La -
NLY39_RS06170 (NLY39_06170) 1361336..1362040 - 705 WP_003241572.1 hypothetical protein -
NLY39_RS06175 (NLY39_06175) 1362315..1363064 + 750 WP_012017869.1 AraC family transcriptional regulator -
NLY39_RS06180 (NLY39_06180) 1363200..1363886 + 687 WP_254299701.1 methylamine utilization protein -
NLY39_RS06185 (NLY39_06185) 1363873..1366212 + 2340 WP_254299703.1 EAL domain-containing protein -
NLY39_RS06190 (NLY39_06190) 1366216..1367067 + 852 WP_096827163.1 DUF3034 family protein -
NLY39_RS06195 (NLY39_06195) 1367070..1367489 + 420 WP_003241582.1 group 1 truncated hemoglobin -
NLY39_RS06200 (NLY39_06200) 1367499..1368086 - 588 WP_195882717.1 D-sedoheptulose 7-phosphate isomerase -
NLY39_RS06205 (NLY39_06205) 1368101..1369390 - 1290 WP_003241585.1 M18 family aminopeptidase -
NLY39_RS06210 (NLY39_06210) 1369586..1370221 - 636 WP_012017873.1 RluA family pseudouridine synthase -
NLY39_RS06215 (NLY39_06215) 1370490..1370744 - 255 WP_003241592.1 cell division topological specificity factor MinE -
NLY39_RS06220 (NLY39_06220) 1370741..1371556 - 816 WP_003241594.1 septum site-determining protein MinD -
NLY39_RS06225 (NLY39_06225) 1371659..1372387 - 729 WP_195882719.1 septum site-determining protein MinC -
NLY39_RS06230 (NLY39_06230) 1372635..1373567 + 933 WP_012017874.1 lipid A biosynthesis lauroyl acyltransferase -
NLY39_RS06235 (NLY39_06235) 1373604..1374785 + 1182 WP_012017875.1 patatin-like phospholipase family protein -
NLY39_RS06240 (NLY39_06240) 1374880..1375734 - 855 WP_129483477.1 pirin family protein -
NLY39_RS06245 (NLY39_06245) 1375847..1376617 - 771 WP_003241605.1 VacJ family lipoprotein -
NLY39_RS06250 (NLY39_06250) 1376610..1377908 - 1299 WP_003241608.1 hypothetical protein -
NLY39_RS06255 (NLY39_06255) 1377994..1378482 - 489 WP_012017878.1 GNAT family N-acetyltransferase -
NLY39_RS06260 (NLY39_06260) 1378546..1378767 - 222 WP_003241614.1 DUF2061 domain-containing protein -
NLY39_RS06265 (NLY39_06265) 1378919..1379290 + 372 WP_003241615.1 DUF2784 domain-containing protein -
NLY39_RS06270 (NLY39_06270) 1379535..1380347 + 813 WP_096827158.1 SDR family oxidoreductase -
NLY39_RS06275 (NLY39_06275) 1380465..1381595 + 1131 WP_096827157.1 MFS transporter -
NLY39_RS06280 (NLY39_06280) 1381670..1382098 + 429 WP_003241621.1 hypothetical protein -
NLY39_RS06285 (NLY39_06285) 1382108..1382440 + 333 WP_003241623.1 YnfA family protein -
NLY39_RS06290 (NLY39_06290) 1382620..1383933 + 1314 WP_003241624.1 OprO/OprP family phosphate-selective porin -
NLY39_RS06295 (NLY39_06295) 1384016..1385140 + 1125 WP_254299706.1 GNAT family N-acetyltransferase -
NLY39_RS06300 (NLY39_06300) 1385597..1387087 + 1491 WP_003241627.1 sodium/proline symporter PutP -
NLY39_RS06305 (NLY39_06305) 1387264..1387488 + 225 WP_177491235.1 VF530 family protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance