MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 54854 bp
Accession: NZ_CP100430 Location: 1038744..1093597 Organism: Streptococcus suis strain LSS42 Replicon: chromosome
Accession: NZ_CP100430 Location: 1038744..1093597 Organism: Streptococcus suis strain LSS42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLY76_RS04955 (NLY76_04955) | 1033984..1035072 | + | 1089 | WP_024409336.1 | toprim domain-containing protein | - |
| NLY76_RS04960 (NLY76_04960) | 1035126..1035353 | + | 228 | WP_024409335.1 | DUF5965 family protein | - |
| NLY76_RS04965 (NLY76_04965) | 1035357..1035752 | + | 396 | WP_017285409.1 | DUF5945 family protein | - |
| NLY76_RS04970 (NLY76_04970) | 1035796..1036080 | + | 285 | WP_024409334.1 | hypothetical protein | - |
| NLY76_RS04975 (NLY76_04975) | 1036150..1036626 | + | 477 | WP_024409333.1 | type II toxin-antitoxin system antitoxin PezA | - |
| NLY76_RS04980 (NLY76_04980) | 1036626..1037420 | + | 795 | WP_024409332.1 | type II toxin-antitoxin system toxin PezT | - |
| NLY76_RS04985 (NLY76_04985) | 1037401..1039434 | + | 2034 | WP_044678920.1 | ATP-dependent endonuclease | - |
| NLY76_RS04990 (NLY76_04990) | 1039416..1041341 | + | 1926 | WP_044769862.1 | ATP-dependent helicase | - |
| NLY76_RS04995 (NLY76_04995) | 1041388..1041972 | + | 585 | WP_228480237.1 | hypothetical protein | - |
| NLY76_RS05000 (NLY76_05000) | 1042298..1042657 | + | 360 | WP_024409326.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| NLY76_RS05005 (NLY76_05005) | 1042667..1043032 | + | 366 | WP_024409325.1 | MobC family plasmid mobilization relaxosome protein | - |
| NLY76_RS05010 (NLY76_05010) | 1043019..1044884 | + | 1866 | WP_044769863.1 | SAG1250 family conjugative relaxase | - |
| NLY76_RS05015 (NLY76_05015) | 1044929..1045633 | - | 705 | WP_044666773.1 | HAD family hydrolase | - |
| NLY76_RS05020 (NLY76_05020) | 1045642..1046403 | - | 762 | WP_044666774.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| NLY76_RS05025 (NLY76_05025) | 1046584..1047534 | + | 951 | WP_044666776.1 | ROK family glucokinase | - |
| NLY76_RS05030 (NLY76_05030) | 1047771..1048196 | + | 426 | WP_003084983.1 | galactose-6-phosphate isomerase subunit LacA | - |
| NLY76_RS05035 (NLY76_05035) | 1048230..1048745 | + | 516 | WP_002936382.1 | galactose-6-phosphate isomerase subunit LacB | - |
| NLY76_RS05040 (NLY76_05040) | 1048757..1049689 | + | 933 | WP_024409321.1 | tagatose-6-phosphate kinase | - |
| NLY76_RS05045 (NLY76_05045) | 1049692..1050672 | + | 981 | WP_029743106.1 | tagatose-bisphosphate aldolase | - |
| NLY76_RS05050 (NLY76_05050) | 1050700..1051017 | + | 318 | WP_024409319.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| NLY76_RS05055 (NLY76_05055) | 1051017..1052720 | + | 1704 | WP_024409318.1 | lactose-specific PTS transporter subunit EIIC | - |
| NLY76_RS05060 (NLY76_05060) | 1052786..1054192 | + | 1407 | WP_012775549.1 | 6-phospho-beta-galactosidase | - |
| NLY76_RS05065 (NLY76_05065) | 1054280..1055176 | + | 897 | WP_024409316.1 | aldose 1-epimerase family protein | - |
| NLY76_RS05070 (NLY76_05070) | 1055423..1055647 | + | 225 | WP_003108992.1 | helix-turn-helix transcriptional regulator | - |
| NLY76_RS05075 (NLY76_05075) | 1055917..1056165 | + | 249 | WP_029743105.1 | DUF3173 family protein | - |
| NLY76_RS05080 (NLY76_05080) | 1056168..1057373 | + | 1206 | WP_024409315.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NLY76_RS05085 (NLY76_05085) | 1057552..1058301 | + | 750 | WP_044677314.1 | HAD family hydrolase | - |
| NLY76_RS05090 (NLY76_05090) | 1058497..1059831 | + | 1335 | WP_002943297.1 | methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO | - |
| NLY76_RS05095 (NLY76_05095) | 1059909..1060913 | + | 1005 | WP_044693370.1 | crosslink repair DNA glycosylase YcaQ family protein | - |
| NLY76_RS05100 (NLY76_05100) | 1061027..1061854 | + | 828 | WP_044693372.1 | alpha/beta hydrolase | - |
| NLY76_RS05105 (NLY76_05105) | 1061885..1062631 | + | 747 | WP_002935029.1 | alpha/beta hydrolase-fold protein | - |
| NLY76_RS05110 (NLY76_05110) | 1062649..1063815 | + | 1167 | WP_044693374.1 | carbamoyl phosphate synthase large subunit | - |
| NLY76_RS05115 (NLY76_05115) | 1063954..1064094 | + | 141 | WP_032497540.1 | hypothetical protein | - |
| NLY76_RS05120 (NLY76_05120) | 1064107..1064496 | + | 390 | WP_044677324.1 | NisI/SpaI family lantibiotic immunity lipoprotein | - |
| NLY76_RS05125 (NLY76_05125) | 1064505..1065257 | + | 753 | WP_024385226.1 | ABC transporter ATP-binding protein YxdL | VF |
| NLY76_RS05130 (NLY76_05130) | 1065258..1067228 | + | 1971 | WP_044769864.1 | FtsX-like permease family protein | - |
| NLY76_RS05135 (NLY76_05135) | 1067319..1067558 | + | 240 | WP_024394016.1 | DUF6290 family protein | Antitoxin Detail |
| NLY76_RS05140 (NLY76_05140) | 1067548..1067814 | + | 267 | WP_044769866.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NLY76_RS05145 (NLY76_05145) | 1067853..1068521 | + | 669 | WP_024381849.1 | Response regulator protein GraR | VF |
| NLY76_RS05150 (NLY76_05150) | 1068518..1069459 | + | 942 | WP_015646835.1 | sensor histidine kinase | - |
| NLY76_RS05155 (NLY76_05155) | 1069536..1071044 | + | 1509 | WP_024390380.1 | Phosphomannomutase/phosphoglucomutase | VF |
| NLY76_RS05160 (NLY76_05160) | 1071107..1072177 | - | 1071 | WP_024390379.1 | Tyrosine recombinase XerS ; Integrase | Integrase |
| NLY76_RS05165 (NLY76_05165) | 1072508..1072870 | - | 363 | WP_228475369.1 | adenylyl-sulfate kinase | - |
| NLY76_RS05170 (NLY76_05170) | 1072933..1073673 | - | 741 | WP_024395854.1 | DUF3307 domain-containing protein | - |
| NLY76_RS05175 (NLY76_05175) | 1073677..1074345 | - | 669 | WP_044686474.1 | SatD family protein | - |
| NLY76_RS05180 (NLY76_05180) | 1074539..1076113 | - | 1575 | WP_044769867.1 | signal recognition particle protein | - |
| NLY76_RS05185 (NLY76_05185) | 1076126..1076458 | - | 333 | WP_002935001.1 | putative DNA-binding protein | - |
| NLY76_RS05190 (NLY76_05190) | 1076561..1077259 | - | 699 | WP_002943214.1 | GntR family transcriptional regulator | - |
| NLY76_RS05195 (NLY76_05195) | 1077535..1079085 | + | 1551 | WP_002934999.1 | glutamine-hydrolyzing GMP synthase | - |
| NLY76_RS05200 (NLY76_05200) | 1079260..1080309 | - | 1050 | WP_044769868.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| NLY76_RS05205 (NLY76_05205) | 1080306..1082003 | - | 1698 | WP_044769870.1 | AAA family ATPase | - |
| NLY76_RS05210 (NLY76_05210) | 1082199..1082987 | + | 789 | WP_044769871.1 | hypothetical protein | - |
| NLY76_RS05215 (NLY76_05215) | 1083105..1083962 | + | 858 | WP_044757624.1 | hypothetical protein | - |
| NLY76_RS05220 (NLY76_05220) | 1083991..1084176 | - | 186 | WP_228477905.1 | HIRAN domain-containing protein | - |
| NLY76_RS05225 (NLY76_05225) | 1084360..1085109 | - | 750 | WP_044757623.1 | DUF6287 domain-containing protein | - |
| NLY76_RS05230 (NLY76_05230) | 1085126..1085884 | - | 759 | WP_044757622.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| NLY76_RS05235 (NLY76_05235) | 1085985..1086584 | - | 600 | WP_002934990.1 | lysozyme family protein | - |
| NLY76_RS05240 (NLY76_05240) | 1086585..1087559 | - | 975 | WP_002943200.1 | nucleoid-associated protein | - |
| NLY76_RS05245 (NLY76_05245) | 1087559..1088818 | - | 1260 | WP_011922374.1 | serine hydroxymethyltransferase | - |
| NLY76_RS05250 (NLY76_05250) | 1088842..1089273 | - | 432 | WP_014637945.1 | GNAT family N-acetyltransferase | - |
| NLY76_RS05255 (NLY76_05255) | 1089270..1089878 | - | 609 | WP_172045470.1 | L-threonylcarbamoyladenylate synthase | - |
| NLY76_RS05260 (NLY76_05260) | 1089865..1090698 | - | 834 | WP_014637947.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| NLY76_RS05265 (NLY76_05265) | 1090698..1091777 | - | 1080 | WP_015646857.1 | peptide chain release factor 1 | - |
| NLY76_RS05270 (NLY76_05270) | 1092111..1092692 | - | 582 | WP_024385697.1 | thymidine kinase | - |
| NLY76_RS05275 (NLY76_05275) | 1092791..1093015 | - | 225 | WP_002934981.1 | hypothetical protein | - |
| NLY76_RS05280 (NLY76_05280) | 1093077..1094390 | - | 1314 | WP_044755857.1 | excalibur calcium-binding domain-containing protein | - |
| NLY76_RS05285 (NLY76_05285) | 1094525..1094707 | + | 183 | WP_002934978.1 | 4-oxalocrotonate tautomerase | - |
| NLY76_RS05290 (NLY76_05290) | 1094757..1096589 | - | 1833 | WP_044769873.1 | translation elongation factor 4 | - |
| NLY76_RS05295 (NLY76_05295) | 1096685..1097098 | - | 414 | WP_024385693.1 | nucleoside-diphosphate kinase | - |
| NLY76_RS05300 (NLY76_05300) | 1097121..1097708 | - | 588 | WP_044769874.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|