MGE detailed information
MGE type: Prophage MGE length: 61647 bp
Accession: NZ_CP099910 Location: 2402467..2464113 Organism: Escherichia albertii strain 110_1_TBG_A Replicon: chromosome
Accession: NZ_CP099910 Location: 2402467..2464113 Organism: Escherichia albertii strain 110_1_TBG_A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIY87_RS11830 (2398368) | 2398368..2399588 | + | 1221 | WP_000225258.1 | DNA-binding transcriptional repressor Mlc | - |
| NIY87_RS11835 (2399714) | 2399714..2400409 | + | 696 | WP_000919219.1 | dethiobiotin synthase | - |
| NIY87_RS11840 (2400362) | 2400362..2401654 | - | 1293 | WP_071586023.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NIY87_RS11845 (2401810) | 2401810..2402424 | - | 615 | WP_054410585.1 | Tat proofreading chaperone DmsD | - |
| NIY87_RS11850 (2402467) | 2402467..2403324 | - | 858 | WP_059224358.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NIY87_RS11855 (2403326) | 2403326..2403943 | - | 618 | WP_000213046.1 | dimethylsulfoxide reductase subunit B | - |
| NIY87_RS11860 (2403954) | 2403954..2406377 | - | 2424 | WP_072248388.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NIY87_RS11865 (2406440) | 2406440..2408866 | - | 2427 | WP_256876107.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NIY87_RS11870 (2409110) | 2409110..2409415 | - | 306 | WP_059224354.1 | DUF1161 domain-containing protein | - |
| NIY87_RS11875 (2409523) | 2409523..2410233 | + | 711 | WP_095575737.1 | YnfC family lipoprotein | - |
| NIY87_RS11880 (2410236) | 2410236..2410796 | - | 561 | WP_000606224.1 | spermidine N1-acetyltransferase | - |
| NIY87_RS11885 (2410831) | 2410831..2411172 | - | 342 | WP_001066434.1 | DUF1283 family protein | - |
| NIY87_RS11890 (2411307) | 2411307..2411633 | + | 327 | WP_059215949.1 | YnfA family protein | - |
| NIY87_RS11895 (2411830) | 2411830..2413044 | + | 1215 | WP_256876108.1 | starvation-sensing protein RspA | - |
| NIY87_RS11900 (2413058) | 2413058..2414077 | + | 1020 | WP_000836027.1 | Zn-dependent oxidoreductase | - |
| NIY87_RS11905 (2414265) | 2414265..2415545 | - | 1281 | WP_000876986.1 | hypothetical protein ; Integrase | Integrase |
| NIY87_RS11910 (2415580) | 2415580..2415831 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| NIY87_RS11915 (2415904) | 2415904..2418375 | - | 2472 | WP_000048330.1 | exonuclease | - |
| NIY87_RS11920 (2418469) | 2418469..2418660 | - | 192 | WP_001083280.1 | lysis protein YdfD | - |
| NIY87_RS11925 (2418657) | 2418657..2418845 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NIY87_RS11930 (2419332) | 2419332..2419907 | - | 576 | WP_000344954.1 | hypothetical protein | - |
| NIY87_RS11935 (2419909) | 2419909..2420064 | - | 156 | WP_000379589.1 | DUF1391 family protein | - |
| NIY87_RS11940 (2420257) | 2420257..2420664 | - | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| NIY87_RS11945 (2420742) | 2420742..2420969 | + | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| NIY87_RS11950 (2420953) | 2420953..2421474 | + | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| NIY87_RS11955 (2421455) | 2421455..2422420 | + | 966 | WP_000054504.1 | hypothetical protein | - |
| NIY87_RS11960 (2422461) | 2422461..2422880 | + | 420 | WP_001151196.1 | DUF977 family protein | - |
| NIY87_RS11965 (2422935) | 2422935..2423984 | + | 1050 | Protein_2337 | ISNCY family transposase ISCARN112 | Transposase |
| NIY87_RS11970 (2424105) | 2424105..2424254 | + | 150 | WP_180302674.1 | ISNCY family transposase ISCARN112 | Transposase |
| NIY87_RS11975 (2424691) | 2424691..2425023 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| NIY87_RS11980 (2425226) | 2425226..2425531 | - | 306 | WP_071527819.1 | protein YdfV | - |
| NIY87_RS11985 (2425556) | 2425556..2425795 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NIY87_RS11990 (2425795) | 2425795..2426082 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NIY87_RS11995 (2426154) | 2426154..2426309 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NIY87_RS12000 (2426526) | 2426526..2426777 | + | 252 | WP_000980994.1 | protein Rem | - |
| NIY87_RS12005 (2426844) | 2426844..2427122 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| NIY87_RS12010 (2427124) | 2427124..2428173 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| NIY87_RS12015 (2428187) | 2428187..2428939 | + | 753 | WP_001047135.1 | antitermination protein | - |
| NIY87_RS12020 (2429217) | 2429217..2429306 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NIY87_RS12025 (2429361) | 2429361..2429573 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NIY87_RS12030 (2429874) | 2429874..2430089 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NIY87_RS12035 (2430453) | 2430453..2430623 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NIY87_RS12045 (2432179) | 2432179..2432367 | + | 189 | WP_256877802.1 | class II holin family protein | - |
| NIY87_RS12050 (2432424) | 2432424..2433592 | + | 1169 | WP_094249652.1 | IS3 family transposase ISLad1 | Transposase |
| NIY87_RS12055 (2433651) | 2433651..2433962 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| NIY87_RS12060 (2433959) | 2433959..2434492 | + | 534 | WP_001092966.1 | lysozyme | - |
| NIY87_RS12065 (2434489) | 2434489..2434986 | + | 498 | WP_001071776.1 | DUF2514 domain-containing protein | - |
| NIY87_RS12070 (2435350) | 2435350..2435562 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NIY87_RS12075 (2435573) | 2435573..2435761 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NIY87_RS12080 (2435764) | 2435764..2435829 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| NIY87_RS12085 (2435909) | 2435909..2436064 | + | 156 | WP_001309517.1 | protein YnfN | - |
| NIY87_RS12090 (2436236) | 2436236..2436409 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NIY87_RS12095 (2436561) | 2436561..2436971 | - | 411 | WP_000035577.1 | DUF1398 domain-containing protein | - |
| NIY87_RS12100 (2437272) | 2437272..2437478 | + | 207 | WP_001031431.1 | hypothetical protein | - |
| NIY87_RS12105 (2438051) | 2438051..2438578 | + | 528 | WP_001595800.1 | DUF1441 family protein | - |
| NIY87_RS12110 (2438587) | 2438587..2440686 | + | 2100 | WP_096851820.1 | phage terminase large subunit family protein | - |
| NIY87_RS12115 (2440683) | 2440683..2440895 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| NIY87_RS12120 (2440895) | 2440895..2442403 | + | 1509 | WP_000985929.1 | phage portal protein | - |
| NIY87_RS12125 (2442348) | 2442348..2444375 | + | 2028 | WP_001136593.1 | hypothetical protein | VF |
| NIY87_RS12130 (2444462) | 2444462..2444785 | + | 324 | WP_001097050.1 | DUF2190 family protein | - |
| NIY87_RS12135 (2444778) | 2444778..2445053 | + | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| NIY87_RS12140 (2445065) | 2445065..2445643 | + | 579 | WP_256876264.1 | phage tail protein | - |
| NIY87_RS12145 (2445640) | 2445640..2446041 | + | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| NIY87_RS12150 (2446052) | 2446052..2446795 | + | 744 | WP_000211129.1 | phage tail protein | - |
| NIY87_RS12155 (2446856) | 2446856..2447242 | + | 387 | WP_001300035.1 | phage minor tail protein G | - |
| NIY87_RS12160 (2447251) | 2447251..2447580 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| NIY87_RS12165 (2447552) | 2447552..2450617 | + | 3066 | WP_256877707.1 | phage tail tape measure protein | - |
| NIY87_RS12170 (2450617) | 2450617..2450946 | + | 330 | WP_000447248.1 | phage tail protein | - |
| NIY87_RS12175 (2450956) | 2450956..2451654 | + | 699 | WP_061348596.1 | phage minor tail protein L | - |
| NIY87_RS12180 (2451660) | 2451660..2452403 | + | 744 | WP_256877708.1 | C40 family peptidase | - |
| NIY87_RS12185 (2452301) | 2452301..2452948 | + | 648 | WP_000741589.1 | tail assembly protein | - |
| NIY87_RS12190 (2453008) | 2453008..2456421 | + | 3414 | Protein_2382 | host specificity protein J | - |
| NIY87_RS12195 (2456492) | 2456492..2457091 | + | 600 | WP_061348595.1 | hypothetical protein | VF |
| NIY87_RS12200 (2457156) | 2457156..2460230 | + | 3075 | WP_072305171.1 | phage tail protein | - |
| NIY87_RS12205 (2460230) | 2460230..2460805 | + | 576 | WP_000885584.1 | tail fiber assembly protein | - |
| NIY87_RS12210 (2460903) | 2460903..2461493 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NIY87_RS12215 (2461811) | 2461811..2462044 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NIY87_RS12220 (2462113) | 2462113..2462226 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NIY87_RS12225 (2462830) | 2462830..2464113 | + | 1284 | Protein_2389 | MHS family MFS transporter | - |
| NIY87_RS12230 (2464202) | 2464202..2465662 | + | 1461 | WP_059225576.1 | mannitol dehydrogenase family protein | - |
| NIY87_RS12235 (2465698) | 2465698..2465901 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NIY87_RS12240 (2466076) | 2466076..2466762 | - | 687 | WP_000215537.1 | DNA-binding transcriptional regulator rspR | - |
| NIY87_RS12245 (2466851) | 2466851..2467597 | - | 747 | WP_002462120.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|