MGE detailed information
MGE type: Conjugative plasmid MGE length: 89078 bp
Accession: NZ_CP099908 Location: 1..89078 Organism: Escherichia albertii strain 112_1_EW_A Replicon: plasmid plas1
Accession: NZ_CP099908 Location: 1..89078 Organism: Escherichia albertii strain 112_1_EW_A Replicon: plasmid plas1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIY89_RS23645 () | 3174..3701 | - | 528 | WP_256909405.1 | IS3 family transposase IS2 | Transposase |
| NIY89_RS23650 () | 3741..4025 | - | 285 | WP_001435394.1 | IS3 family transposase IS2 | Transposase |
| NIY89_RS23655 () | 4189..5397 | + | 1209 | Protein_3 | IS3 family transposase ISEc48 | Transposase |
| NIY89_RS23660 () | 5443..5641 | + | 199 | Protein_4 | hypothetical protein | - |
| NIY89_RS23665 () | 5625..7275 | + | 1651 | Protein_5 | hypothetical protein | VF |
| NIY89_RS23670 () | 7376..7557 | + | 182 | Protein_6 | IS3 family transposase | - |
| NIY89_RS23675 () | 7563..7814 | - | 252 | Protein_7 | IS110 family transposase | - |
| NIY89_RS23680 () | 7880..7981 | + | 102 | Protein_8 | hypothetical protein | - |
| NIY89_RS23685 () | 8102..8455 | + | 354 | Protein_9 | tyrosine-type recombinase/integrase | - |
| NIY89_RS23690 () | 8513..9310 | - | 798 | WP_146707378.1 | IS21 family transposase IS21 | Transposase |
| NIY89_RS23695 () | 9310..10482 | - | 1173 | WP_256876216.1 | IS21 family transposase IS21 | Transposase |
| NIY89_RS23700 () | 10583..10924 | - | 342 | Protein_12 | protein RepA | - |
| NIY89_RS23705 () | 11461..12057 | - | 597 | WP_256876215.1 | hypothetical protein | - |
| NIY89_RS23710 () | 12045..12314 | - | 270 | WP_256876214.1 | hypothetical protein | - |
| NIY89_RS23715 () | 12633..14204 | + | 1572 | WP_256876213.1 | ATP-binding protein | - |
| NIY89_RS23720 () | 14412..15392 | - | 981 | WP_256909404.1 | hypothetical protein | - |
| NIY89_RS23725 () | 15532..15948 | - | 417 | WP_256876211.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NIY89_RS23730 () | 15945..16175 | - | 231 | WP_256876210.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NIY89_RS23735 () | 16744..17157 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| NIY89_RS23740 () | 17159..17941 | + | 783 | WP_021533580.1 | site-specific integrase | - |
| NIY89_RS23745 () | 18114..18467 | + | 354 | WP_000864812.1 | colicin M immunity protein | - |
| NIY89_RS23750 () | 18517..19332 | - | 816 | WP_000449473.1 | lipid II-degrading bacteriocin colicin M | - |
| NIY89_RS23755 () | 19575..20102 | + | 528 | WP_000203268.1 | colicin B immunity protein | - |
| NIY89_RS23760 () | 20120..21655 | - | 1536 | WP_256876209.1 | pore-forming bacteriocin colicin B | - |
| NIY89_RS23765 () | 22096..22608 | + | 513 | WP_001027529.1 | hypothetical protein | - |
| NIY89_RS23770 () | 22759..23109 | - | 351 | WP_000361384.1 | plasmid partitioning/stability family protein | - |
| NIY89_RS23775 () | 23112..24074 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| NIY89_RS23780 () | 24221..24513 | + | 293 | Protein_28 | hypothetical protein | - |
| NIY89_RS23785 () | 24590..25273 | + | 684 | WP_000085940.1 | DNA methylase | - |
| NIY89_RS23790 () | 25274..25495 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| NIY89_RS23795 () | 25425..25943 | + | 519 | WP_223174655.1 | DUF1380 family protein | - |
| NIY89_RS23800 () | 25988..26758 | + | 771 | WP_001006200.1 | hypothetical protein | - |
| NIY89_RS23805 () | 27171..27596 | + | 426 | WP_001198941.1 | antirestriction protein | - |
| NIY89_RS23810 () | 27643..28065 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| NIY89_RS23815 () | 28062..28253 | + | 192 | WP_001027519.1 | hypothetical protein | - |
| NIY89_RS23820 () | 29291..29521 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| NIY89_RS23825 () | 29573..30934 | + | 1362 | WP_001554356.1 | DUF3560 domain-containing protein | - |
| NIY89_RS23830 () | 30982..31545 | + | 564 | WP_001330829.1 | class I SAM-dependent methyltransferase | - |
| NIY89_RS23835 () | 31697..31924 | + | 228 | WP_071594011.1 | hypothetical protein | - |
| NIY89_RS23840 () | 32165..32371 | + | 207 | WP_000547971.1 | hypothetical protein | - |
| NIY89_RS23845 () | 32397..32936 | + | 540 | WP_000290812.1 | single-stranded DNA-binding protein | - |
| NIY89_RS23850 () | 32998..33231 | + | 234 | WP_000006030.1 | DUF905 family protein | - |
| NIY89_RS23855 () | 33296..35254 | + | 1959 | WP_000117210.1 | ParB/RepB/Spo0J family partition protein | - |
| NIY89_RS23860 () | 35309..35743 | + | 435 | WP_000845873.1 | conjugation system SOS inhibitor PsiB | - |
| NIY89_RS23865 () | 35740..36502 | + | 763 | Protein_45 | plasmid SOS inhibition protein A | - |
| NIY89_RS23870 () | 36471..36659 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 36471..36695 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 36471..36695 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 36471..36695 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 36471..36695 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - | 36628..36693 | - | 66 | - | - | Antitoxin Detail |
| NIY89_RS23875 () | 36681..36830 | + | 150 | Protein_47 | plasmid maintenance protein Mok | - |
| NIY89_RS23880 () | 36772..36897 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NIY89_RS23885 () | 37117..37347 | + | 231 | WP_256876178.1 | hypothetical protein | - |
| NIY89_RS23890 () | 37345..37518 | - | 174 | Protein_50 | hypothetical protein | - |
| NIY89_RS23895 () | 37588..37794 | + | 207 | WP_000547971.1 | hypothetical protein | - |
| NIY89_RS23900 () | 37819..38106 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| NIY89_RS23905 () | 38226..39047 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| NIY89_RS23910 () | 39344..39991 | - | 648 | WP_256876177.1 | hypothetical protein | VF |
| NIY89_RS23915 () | 40268..40651 | + | 384 | WP_000124979.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NIY89_RS23920 () | 40842..41528 | + | 687 | WP_000332493.1 | PAS domain-containing protein | - |
| NIY89_RS23925 () | 41622..41849 | + | 228 | WP_001254385.1 | conjugal transfer relaxosome protein TraY | - |
| NIY89_RS23930 () | 41883..42242 | + | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| NIY89_RS23935 () | 42257..42568 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| NIY89_RS23940 () | 42590..43156 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| NIY89_RS23945 () | 43143..43871 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| NIY89_RS23950 () | 43871..45298 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NIY89_RS23955 () | 45288..45860 | + | 573 | WP_000002794.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NIY89_RS23960 () | 45857..46174 | + | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| NIY89_RS23965 () | 46171..46422 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| NIY89_RS23970 () | 46419..46934 | + | 516 | WP_000809906.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NIY89_RS23975 () | 47068..47289 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| NIY89_RS23980 () | 47449..50076 | + | 2628 | WP_001064248.1 | type IV secretion system protein TraC | - |
| NIY89_RS23985 () | 50073..50459 | + | 387 | WP_000214096.1 | type-F conjugative transfer system protein TrbI | - |
| NIY89_RS23990 () | 50456..51088 | + | 633 | WP_001203745.1 | type-F conjugative transfer system protein TraW | - |
| NIY89_RS23995 () | 51085..52077 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| NIY89_RS24000 () | 52103..52564 | + | 462 | WP_000277845.1 | hypothetical protein | - |
| NIY89_RS24005 () | 52594..53046 | + | 453 | WP_000069427.1 | hypothetical protein | - |
| NIY89_RS24010 () | 53074..53712 | + | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NIY89_RS24015 () | 53709..55517 | + | 1809 | WP_000821818.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NIY89_RS24020 () | 55544..55801 | + | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| NIY89_RS24025 () | 55794..56537 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NIY89_RS24030 () | 56553..56900 | + | 348 | WP_001287895.1 | conjugal transfer protein TrbA | - |
| NIY89_RS24035 () | 57019..57303 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NIY89_RS24040 () | 57290..57835 | + | 546 | WP_000059847.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NIY89_RS24045 () | 57765..58127 | + | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| NIY89_RS24050 () | 58127..59500 | + | 1374 | Protein_82 | conjugal transfer protein TraH | - |
| NIY89_RS24055 () | 59497..62319 | + | 2823 | WP_011251382.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NIY89_RS24060 () | 62334..62837 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| NIY89_RS24065 () | 62890..63600 | + | 711 | WP_045227890.1 | conjugal transfer complement resistance protein TraT | - |
| NIY89_RS24070 () | 63853..66087 | + | 2235 | WP_256877816.1 | type IV conjugative transfer system coupling protein TraD | - |
| NIY89_RS24075 () | 66087..71342 | + | 5256 | WP_256909402.1 | Multifunctional conjugation protein TraI | Relaxase |
| NIY89_RS24080 () | 71362..72108 | + | 747 | WP_011251385.1 | conjugal transfer pilus acetylase TraX | - |
| NIY89_RS24085 () | 72167..73027 | + | 861 | WP_000704523.1 | Quorum-quenching protein AidA | VF |
| NIY89_RS24090 () | 73130..73690 | + | 561 | WP_000139318.1 | fertility inhibition protein FinO | - |
| NIY89_RS24095 () | 73819..74031 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| NIY89_RS24100 () | 74276..74737 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| NIY89_RS24105 () | 74783..74992 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| NIY89_RS24110 () | 75030..75620 | + | 591 | WP_000766805.1 | DUF2726 domain-containing protein | - |
| NIY89_RS24115 () | 75860..76117 | + | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| NIY89_RS24120 () | 76221..76401 | + | 181 | Protein_96 | protein CopA/IncA | - |
| NIY89_RS24125 () | 76420..77277 | + | 858 | WP_000130642.1 | incFII family plasmid replication initiator RepA | - |
| NIY89_RS24130 () | 78082..78316 | - | 235 | Protein_98 | IS110 family transposase | - |
| NIY89_RS24135 () | 78308..79223 | - | 916 | Protein_99 | IS630 family transposase ISSpu2 | Transposase |
| NIY89_RS24140 () | 79389..80024 | - | 636 | WP_074458670.1 | hypothetical protein | VF |
| NIY89_RS24145 () | 80535..80931 | - | 397 | Protein_101 | IS481 family transposase | - |
| NIY89_RS24160 () | 83835..84000 | + | 166 | Protein_104 | IS3 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|