MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 115589 bp
Accession: NZ_CP099806 Location: 1..115589 Organism: Yersinia ruckeri strain NVI-10705 Replicon: plasmid pYR4
Accession: NZ_CP099806 Location: 1..115589 Organism: Yersinia ruckeri strain NVI-10705 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOR96_RS17465 (LOR96_017460) | 115..759 | + | 645 | WP_268665587.1 | IS6 family transposase ISEas1 | Transposase |
| LOR96_RS17470 (LOR96_017465) | 853..1500 | - | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LOR96_RS17475 (LOR96_017470) | 1744..1971 | + | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LOR96_RS17480 (LOR96_017475) | 2019..2714 | + | 696 | WP_126940192.1 | IS6 family transposase ISEas1 | Transposase |
| LOR96_RS17485 (LOR96_017480) | 2788..3366 | - | 579 | WP_126940193.1 | hypothetical protein | - |
| LOR96_RS17490 (LOR96_017485) | 3591..3827 | + | 237 | Protein_6 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LOR96_RS17495 (LOR96_017490) | 3855..4691 | - | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| LOR96_RS17500 (LOR96_017495) | 4761..5159 | - | 399 | WP_126940196.1 | VOC family protein | - |
| LOR96_RS17505 (LOR96_017500) | 5203..6312 | - | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| LOR96_RS17510 (LOR96_017505) | 6347..6622 | - | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| LOR96_RS17515 (LOR96_017510) | 6851..8002 | - | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| LOR96_RS17520 (LOR96_017515) | 8120..8277 | - | 158 | Protein_12 | IS5/IS1182 family transposase | - |
| LOR96_RS17525 (LOR96_017520) | 8283..8364 | - | 82 | Protein_13 | regulator protein FrmR | - |
| LOR96_RS17530 (LOR96_017525) | 8800..10197 | - | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| LOR96_RS17535 (LOR96_017530) | 10234..10806 | - | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| LOR96_RS17540 (LOR96_017535) | 10938..11528 | - | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOR96_RS17545 (LOR96_017540) | 11997..13199 | + | 1203 | WP_126940155.1 | hypothetical protein | - |
| LOR96_RS17550 (LOR96_017545) | 13488..13853 | + | 366 | Protein_18 | Tn3 family transposase | - |
| LOR96_RS17555 (LOR96_017550) | 14884..15834 | - | 951 | WP_126940197.1 | Replication protein | - |
| LOR96_RS17560 (LOR96_017555) | 16731..17441 | + | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| LOR96_RS17565 (LOR96_017560) | 17498..17659 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| LOR96_RS17570 (LOR96_017565) | 17956..18327 | - | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| LOR96_RS17575 (LOR96_017570) | 18622..19131 | + | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| LOR96_RS17580 (LOR96_017575) | 19359..20060 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| LOR96_RS17585 (LOR96_017580) | 20123..20323 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| LOR96_RS17590 (LOR96_017585) | 20401..21444 | + | 1044 | WP_162486785.1 | toxin co-regulated pilus biosynthesis Q family protein | - |
| LOR96_RS17595 (LOR96_017590) | 21444..21869 | + | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| LOR96_RS17600 (LOR96_017595) | 21890..23512 | + | 1623 | WP_248575002.1 | hypothetical protein | VF |
| LOR96_RS17605 (LOR96_017600) | 23692..24240 | + | 549 | WP_162486786.1 | hypothetical protein | - |
| LOR96_RS17610 (LOR96_017605) | 24244..25557 | + | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| LOR96_RS17615 (LOR96_017610) | 25544..26131 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| LOR96_RS17620 (LOR96_017615) | 26135..27628 | + | 1494 | WP_069971730.1 | hypothetical protein | VF |
| LOR96_RS17625 (LOR96_017620) | 27625..28767 | + | 1143 | WP_238692898.1 | hypothetical protein | VF |
| LOR96_RS17630 (LOR96_017625) | 28805..29398 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| LOR96_RS17635 (LOR96_017630) | 29460..29945 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| LOR96_RS17640 (LOR96_017635) | 29945..30595 | + | 651 | WP_038251878.1 | hypothetical protein | VF |
| LOR96_RS17645 (LOR96_017640) | 30592..31665 | + | 1074 | WP_248575003.1 | hypothetical protein | VF |
| LOR96_RS17650 (LOR96_017645) | 31735..32343 | - | 609 | WP_071666813.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LOR96_RS17655 (LOR96_017650) | 32561..32998 | + | 438 | WP_071666928.1 | hypothetical protein | - |
| LOR96_RS17660 (LOR96_017655) | 33000..33422 | + | 423 | WP_040155147.1 | tail assembly chaperone | - |
| LOR96_RS17665 (LOR96_017660) | 33459..33956 | - | 498 | WP_004722849.1 | hypothetical protein | - |
| LOR96_RS17670 (LOR96_017665) | 34275..34475 | + | 201 | Protein_42 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LOR96_RS17675 (LOR96_017670) | 34564..35487 | - | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| LOR96_RS17680 (LOR96_017675) | 36011..36967 | + | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LOR96_RS17685 (LOR96_017680) | 37168..37449 | - | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| LOR96_RS17690 (LOR96_017685) | 37483..38136 | - | 654 | WP_126940185.1 | AAA family ATPase | - |
| LOR96_RS17695 (LOR96_017690) | 38440..39414 | + | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| LOR96_RS17700 (LOR96_017695) | 39416..39817 | + | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| LOR96_RS17705 (LOR96_017700) | 40156..40626 | + | 471 | WP_126940183.1 | hypothetical protein | - |
| LOR96_RS17710 (LOR96_017705) | 40908..41687 | + | 780 | WP_126940182.1 | hypothetical protein | - |
| LOR96_RS17715 (LOR96_017710) | 42079..42585 | + | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| LOR96_RS17720 (LOR96_017715) | 42628..42828 | + | 201 | WP_126940179.1 | hypothetical protein | - |
| LOR96_RS17725 (LOR96_017720) | 43582..43938 | + | 357 | WP_126940178.1 | hypothetical protein | - |
| LOR96_RS17730 (LOR96_017725) | 44024..44170 | + | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| LOR96_RS17735 (LOR96_017730) | 44214..45026 | + | 813 | WP_238692894.1 | N-6 DNA methylase | - |
| LOR96_RS17740 (LOR96_017735) | 45785..46144 | + | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| LOR96_RS17745 (LOR96_017740) | 46141..46638 | + | 498 | WP_126940174.1 | hypothetical protein | - |
| LOR96_RS17750 (LOR96_017745) | 46646..46879 | - | 234 | WP_038251853.1 | hypothetical protein | - |
| LOR96_RS17755 (LOR96_017750) | 47031..47354 | + | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LOR96_RS17760 (LOR96_017755) | 47400..47696 | + | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| LOR96_RS17765 (LOR96_017760) | 48184..48997 | + | 814 | Protein_61 | DUF932 domain-containing protein | - |
| LOR96_RS17770 (LOR96_017765) | 49219..49389 | + | 171 | WP_004720852.1 | DUF5983 family protein | - |
| LOR96_RS17775 (LOR96_017770) | 49536..49859 | - | 324 | WP_004720850.1 | hypothetical protein | - |
| LOR96_RS17780 (LOR96_017775) | 50128..50472 | + | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| LOR96_RS17785 (LOR96_017780) | 50474..52399 | + | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| LOR96_RS17790 (LOR96_017785) | 52696..53745 | + | 1050 | WP_126940173.1 | Abi family protein | - |
| LOR96_RS17795 (LOR96_017790) | 54125..56827 | + | 2703 | WP_126940172.1 | DNA repair protein | - |
| LOR96_RS17800 (LOR96_017795) | 56928..57464 | - | 537 | WP_126940171.1 | Phospholipase D | VF |
| LOR96_RS17805 (LOR96_017800) | 57551..59851 | - | 2301 | WP_126940170.1 | hypothetical protein | VF |
| LOR96_RS17810 (LOR96_017805) | 59862..60926 | - | 1065 | WP_126940169.1 | DsbC family protein | - |
| LOR96_RS17815 (LOR96_017810) | 60931..62214 | - | 1284 | WP_004720838.1 | hypothetical protein | - |
| LOR96_RS17820 (LOR96_017815) | 62310..62990 | - | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LOR96_RS17825 (LOR96_017820) | 63012..63230 | - | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| LOR96_RS17830 (LOR96_017825) | 63336..65477 | - | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| LOR96_RS17835 (LOR96_017830) | 65544..66149 | - | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| LOR96_RS17840 (LOR96_017835) | 66149..67342 | - | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| LOR96_RS17845 (LOR96_017840) | 67356..70433 | - | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| LOR96_RS17850 (LOR96_017845) | 70456..71391 | - | 936 | WP_267257527.1 | hypothetical protein | - |
| LOR96_RS17855 (LOR96_017850) | 71473..71856 | - | 384 | WP_004720828.1 | hypothetical protein | - |
| LOR96_RS17860 (LOR96_017855) | 71881..72408 | - | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| LOR96_RS17865 (LOR96_017860) | 72408..73163 | - | 756 | WP_049688151.1 | hypothetical protein | - |
| LOR96_RS17870 (LOR96_017865) | 73175..74428 | - | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| LOR96_RS17875 (LOR96_017870) | 74431..75426 | - | 996 | WP_162486788.1 | hypothetical protein | VF |
| LOR96_RS17880 (LOR96_017875) | 75445..76167 | - | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| LOR96_RS17885 (LOR96_017880) | 76184..76642 | - | 459 | WP_238692899.1 | hypothetical protein | - |
| LOR96_RS17890 (LOR96_017885) | 76647..80000 | - | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| LOR96_RS17895 (LOR96_017890) | 80016..80276 | - | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| LOR96_RS17900 (LOR96_017895) | 80273..81427 | - | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| LOR96_RS17905 (LOR96_017900) | 81427..82215 | - | 789 | WP_038251876.1 | hypothetical protein | VF |
| LOR96_RS17910 (LOR96_017905) | 82212..82667 | - | 456 | WP_004720812.1 | hypothetical protein | VF |
| LOR96_RS17915 (LOR96_017910) | 83193..83540 | - | 348 | WP_248574997.1 | hypothetical protein | - |
| LOR96_RS17920 (LOR96_017915) | 83764..84288 | - | 525 | WP_025377230.1 | DNA-binding protein | - |
| LOR96_RS17925 (LOR96_017920) | 84533..84754 | + | 222 | WP_025377231.1 | helix-turn-helix domain-containing protein | - |
| LOR96_RS17930 (LOR96_017925) | 84751..86802 | + | 2052 | WP_071666724.1 | Mu transposase C-terminal domain-containing protein | - |
| LOR96_RS17935 (LOR96_017930) | 86845..87735 | + | 891 | WP_005276797.1 | ATPase | - |
| LOR96_RS17940 (LOR96_017935) | 87746..87979 | + | 234 | WP_005276801.1 | hypothetical protein | - |
| LOR96_RS17945 (LOR96_017940) | 87986..88186 | + | 201 | WP_049610289.1 | hypothetical protein | - |
| LOR96_RS17950 (LOR96_017945) | 88176..88814 | + | 639 | WP_071666725.1 | DUF3164 family protein | - |
| LOR96_RS17955 (LOR96_017950) | 88816..89007 | + | 192 | WP_025377236.1 | hypothetical protein | - |
| LOR96_RS17960 (LOR96_017955) | 89091..89804 | + | 714 | WP_071666726.1 | DUF2786 domain-containing protein | - |
| LOR96_RS17965 (LOR96_017960) | 89804..90271 | + | 468 | WP_071666727.1 | ANR family transcriptional regulator | - |
| LOR96_RS17970 (LOR96_017965) | 90268..90489 | + | 222 | WP_071666728.1 | hypothetical protein | - |
| LOR96_RS17975 (LOR96_017970) | 90762..90944 | + | 183 | WP_071666730.1 | hypothetical protein | - |
| LOR96_RS17980 (LOR96_017975) | 90941..91333 | + | 393 | WP_071666731.1 | hypothetical protein | - |
| LOR96_RS17985 (LOR96_017980) | 91326..91799 | + | 474 | WP_071666732.1 | hypothetical protein | - |
| LOR96_RS17990 (LOR96_017985) | 91784..92185 | + | 402 | WP_071666733.1 | regulatory protein GemA | - |
| LOR96_RS17995 (LOR96_017990) | 92185..92619 | + | 435 | WP_071666734.1 | Mor transcription activator family protein | - |
| LOR96_RS18000 (LOR96_017995) | 92632..93108 | + | 477 | WP_139238505.1 | hypothetical protein | - |
| LOR96_RS18005 (LOR96_018000) | 93252..93794 | + | 543 | WP_071666736.1 | glycosyl hydrolase 108 family protein | - |
| LOR96_RS18010 (LOR96_018005) | 93791..94048 | + | 258 | WP_071666737.1 | hypothetical protein | - |
| LOR96_RS18015 (LOR96_018010) | 94032..94613 | + | 582 | WP_071666738.1 | hypothetical protein | - |
| LOR96_RS18020 (LOR96_018015) | 94610..94852 | + | 243 | WP_012303398.1 | hypothetical protein | - |
| LOR96_RS18025 (LOR96_018020) | 94849..95136 | + | 288 | WP_071666739.1 | hypothetical protein | - |
| LOR96_RS18030 (LOR96_018025) | 95139..95639 | + | 501 | WP_071666740.1 | DUF1804 family protein | - |
| LOR96_RS18035 (LOR96_018030) | 95632..95883 | + | 252 | WP_071666741.1 | hypothetical protein | - |
| LOR96_RS18040 (LOR96_018035) | 96140..97795 | + | 1656 | WP_071666743.1 | phage terminase large subunit | - |
| LOR96_RS18045 (LOR96_018040) | 97797..99377 | + | 1581 | WP_071666744.1 | DUF935 domain-containing protein | - |
| LOR96_RS18050 (LOR96_018045) | 99364..100626 | + | 1263 | WP_071666745.1 | phage minor head protein | - |
| LOR96_RS18055 (LOR96_018050) | 100626..101177 | + | 552 | WP_071666746.1 | phage virion morphogenesis protein | - |
| LOR96_RS18060 (LOR96_018055) | 101411..102517 | + | 1107 | WP_071666747.1 | phage protease | - |
| LOR96_RS18065 (LOR96_018060) | 102510..102905 | + | 396 | WP_071666748.1 | hypothetical protein | - |
| LOR96_RS18070 (LOR96_018065) | 102916..103824 | + | 909 | WP_071666749.1 | Mu-like prophage major head subunit gpT family protein | - |
| LOR96_RS18075 (LOR96_018070) | 103824..104279 | + | 456 | WP_071666750.1 | HI1506-related protein | - |
| LOR96_RS18080 (LOR96_018075) | 104291..104719 | + | 429 | WP_071666751.1 | DUF1320 family protein | - |
| LOR96_RS18085 (LOR96_018080) | 104716..105372 | + | 657 | WP_071666752.1 | DUF1834 family protein | - |
| LOR96_RS18090 (LOR96_018085) | 105353..105613 | + | 261 | WP_170856011.1 | DUF2635 domain-containing protein | - |
| LOR96_RS18095 (LOR96_018090) | 105600..107021 | + | 1422 | WP_071666753.1 | phage tail sheath C-terminal domain-containing protein | - |
| LOR96_RS18100 (LOR96_018095) | 107034..107411 | + | 378 | WP_032898430.1 | hypothetical protein | - |
| LOR96_RS18105 (LOR96_018100) | 107411..107797 | + | 387 | WP_071666754.1 | hypothetical protein | - |
| LOR96_RS18110 (LOR96_018105) | 107935..110103 | + | 2169 | WP_071666755.1 | phage tail tape measure protein | - |
| LOR96_RS18115 (LOR96_018110) | 110100..111416 | + | 1317 | WP_071666756.1 | DNA circularization N-terminal domain-containing protein | - |
| LOR96_RS18120 (LOR96_018115) | 111400..112614 | + | 1215 | WP_071666757.1 | phage tail protein | - |
| LOR96_RS18125 (LOR96_018120) | 112604..113254 | + | 651 | WP_071666758.1 | phage baseplate assembly protein V | - |
| LOR96_RS18130 (LOR96_018125) | 113309..113659 | + | 351 | WP_071666759.1 | phage GP46 family protein | - |
| LOR96_RS18135 (LOR96_018130) | 113659..114720 | + | 1062 | WP_071666760.1 | baseplate J/gp47 family protein | - |
| LOR96_RS18140 (LOR96_018135) | 114717..115286 | + | 570 | WP_071666761.1 | DUF2313 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|