MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 160843 bp
Accession: NZ_CP099222 Location: 1030655..1191497 Organism: Citrobacter freundii strain RHB13-SO-C05 Replicon: chromosome
Accession: NZ_CP099222 Location: 1030655..1191497 Organism: Citrobacter freundii strain RHB13-SO-C05 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ76_RS04955 (1026066) | 1026066..1026494 | + | 429 | WP_115257642.1 | YqaA family protein | - |
| NFJ76_RS04960 (1026572) | 1026572..1028128 | + | 1557 | WP_115257643.1 | glutamate--cysteine ligase | - |
| NFJ76_RS04965 (1028278) | 1028278..1028793 | + | 516 | WP_135911530.1 | S-ribosylhomocysteine lyase | - |
| NFJ76_RS04970 (1029123) | 1029123..1030481 | + | 1359 | WP_115257645.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| NFJ76_RS04975 (1030565) | 1030565..1031935 | + | 1371 | WP_137399109.1 | carbohydrate porin | - |
| NFJ76_RS04980 (1032014) | 1032014..1034791 | + | 2778 | WP_135911532.1 | glycoside hydrolase family 3 protein | - |
| NFJ76_RS04985 (1034842) | 1034842..1036380 | - | 1539 | WP_115257648.1 | Multidrug export protein EmrB | VF |
| NFJ76_RS04990 (1036397) | 1036397..1037569 | - | 1173 | WP_182260616.1 | Multidrug export protein EmrA | VF |
| NFJ76_RS04995 (1037700) | 1037700..1038230 | - | 531 | WP_096755998.1 | Transcriptional repressor MprA | VF |
| NFJ76_RS05000 (1038321) | 1038321..1038656 | - | 336 | WP_096755999.1 | L-valine transporter subunit YgaH | - |
| NFJ76_RS05005 (1038646) | 1038646..1039383 | - | 738 | WP_115257649.1 | AzlC family ABC transporter permease | - |
| NFJ76_RS05010 (1039506) | 1039506..1040690 | - | 1185 | WP_279271618.1 | MFS transporter | - |
| NFJ76_RS05015 (1040891) | 1040891..1041886 | - | 996 | WP_181596335.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| NFJ76_RS05020 (1041956) | 1041956..1043020 | - | 1065 | WP_279271619.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| NFJ76_RS05025 (1043013) | 1043013..1044215 | - | 1203 | WP_096756003.1 | Glycine betaine/proline betaine transport system ATP-binding protein ProV | VF |
| NFJ76_RS05035 (1045347) | 1045347..1046306 | - | 960 | WP_117343194.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| NFJ76_RS05040 (1046317) | 1046317..1048461 | - | 2145 | WP_279271620.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| NFJ76_RS05045 (1048434) | 1048434..1048844 | - | 411 | WP_279271621.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| NFJ76_RS05050 (1048841) | 1048841..1049086 | - | 246 | WP_115257654.1 | glutaredoxin-like protein NrdH | - |
| NFJ76_RS05055 (1049312) | 1049312..1049743 | - | 432 | WP_117343197.1 | carboxymuconolactone decarboxylase family protein | - |
| NFJ76_RS05060 (1049834) | 1049834..1051168 | + | 1335 | WP_279271622.1 | PLP-dependent aminotransferase family protein | - |
| NFJ76_RS05065 (1051292) | 1051292..1051642 | + | 351 | WP_096756010.1 | DUF2002 family protein | - |
| NFJ76_RS05070 (1051678) | 1051678..1052127 | - | 450 | WP_096756011.1 | L-alanine exporter AlaE | - |
| NFJ76_RS05075 (1052616) | 1052616..1053017 | + | 402 | WP_115257656.1 | DNA-binding protein StpA | - |
| NFJ76_RS05080 (1053053) | 1053053..1053232 | - | 180 | WP_115257657.1 | hypothetical protein | - |
| NFJ76_RS05085 (1053313) | 1053313..1053840 | - | 528 | WP_181624628.1 | rhodanese family protein | - |
| NFJ76_RS05090 (1053850) | 1053850..1054149 | - | 300 | WP_096756015.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| NFJ76_RS05095 (1054334) | 1054334..1054492 | + | 159 | WP_015585265.1 | YqaE/Pmp3 family membrane protein | - |
| NFJ76_RS05100 (1054489) | 1054489..1055181 | - | 693 | WP_115257660.1 | DNA-binding transcriptional regulator CsiR | - |
| NFJ76_RS05105 (1055227) | 1055227..1056627 | - | 1401 | WP_174361366.1 | GABA permease | - |
| NFJ76_RS05110 (1056772) | 1056772..1058055 | - | 1284 | WP_279271623.1 | 4-aminobutyrate aminotransferase GabT | VF |
| NFJ76_RS05115 (1058080) | 1058080..1059528 | - | 1449 | WP_096756019.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| NFJ76_RS05120 (1059552) | 1059552..1060820 | - | 1269 | WP_096756020.1 | L-2-hydroxyglutarate oxidase | - |
| NFJ76_RS05125 (1060840) | 1060840..1061817 | - | 978 | WP_096756021.1 | glutarate dioxygenase GlaH | - |
| NFJ76_RS05130 (1062078) | 1062078..1062680 | - | 603 | WP_115257664.1 | short chain dehydrogenase | - |
| NFJ76_RS05135 (1062779) | 1062779..1063669 | + | 891 | WP_279271624.1 | HTH-type transcriptional regulator DmlR | VF |
| NFJ76_RS05140 (1063766) | 1063766..1065280 | - | 1515 | WP_153880104.1 | tripartite tricarboxylate transporter permease | - |
| NFJ76_RS05145 (1065291) | 1065291..1065725 | - | 435 | WP_096756025.1 | tripartite tricarboxylate transporter TctB family protein | - |
| NFJ76_RS05150 (1065740) | 1065740..1066717 | - | 978 | WP_096756026.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| NFJ76_RS05155 (1066870) | 1066870..1067544 | + | 675 | WP_115257666.1 | Transcriptional regulatory protein tctD | VF |
| NFJ76_RS05160 (1067531) | 1067531..1068943 | + | 1413 | WP_096756028.1 | sensor histidine kinase | - |
| NFJ76_RS05165 (1069240) | 1069240..1070655 | + | 1416 | WP_137362629.1 | hypothetical protein | VF |
| NFJ76_RS05170 (1070645) | 1070645..1071931 | + | 1287 | WP_153880105.1 | outer membrane beta-barrel protein | - |
| NFJ76_RS05175 (1071933) | 1071933..1072490 | + | 558 | WP_096756031.1 | hypothetical protein | VF |
| NFJ76_RS05180 (1072493) | 1072493..1074622 | + | 2130 | WP_279271973.1 | tyrosine-protein kinase domain-containing protein | - |
| NFJ76_RS05185 (1074619) | 1074619..1075830 | + | 1212 | WP_279271625.1 | capsular biosynthesis protein | - |
| NFJ76_RS05190 (1075827) | 1075827..1077209 | + | 1383 | WP_117343206.1 | capsular biosynthesis protein | - |
| NFJ76_RS05195 (1077202) | 1077202..1078191 | + | 990 | WP_279271626.1 | glycosyltransferase | - |
| NFJ76_RS05200 (1078206) | 1078206..1079417 | + | 1212 | WP_135911549.1 | Alpha-maltose-1-phosphate synthase | VF |
| NFJ76_RS05205 (1079419) | 1079419..1080531 | + | 1113 | WP_279271627.1 | glycosyltransferase family 4 protein | - |
| NFJ76_RS05210 (1080534) | 1080534..1080941 | + | 408 | WP_117343210.1 | hypothetical protein | - |
| NFJ76_RS05215 (1080972) | 1080972..1082369 | + | 1398 | WP_279271628.1 | DUF4832 domain-containing protein | - |
| NFJ76_RS05220 (1082416) | 1082416..1083432 | - | 1017 | WP_135911552.1 | UDP-glucose 4-epimerase | VF |
| NFJ76_RS05225 (1083501) | 1083501..1084439 | - | 939 | WP_279271629.1 | hypothetical protein | - |
| NFJ76_RS05230 (1084608) | 1084608..1085243 | - | 636 | WP_182293725.1 | carbonic anhydrase | - |
| NFJ76_RS05235 (1085399) | 1085399..1086571 | - | 1173 | WP_279271630.1 | PatB family C-S lyase | - |
| NFJ76_RS05240 (1086651) | 1086651..1088111 | - | 1461 | WP_117343215.1 | Na+/H+ antiporter NhaC | - |
| NFJ76_RS05245 (1088325) | 1088325..1089245 | - | 921 | WP_117343216.1 | Melibiose operon regulatory protein | VF |
| NFJ76_RS05250 (1089560) | 1089560..1090051 | + | 492 | WP_279271631.1 | anti-virulence regulator CigR family protein | - |
| NFJ76_RS05255 (1090296) | 1090296..1091492 | + | 1197 | WP_115257680.1 | Secretory immunoglobulin A-binding protein EsiB | VF |
| NFJ76_RS05260 (1091579) | 1091579..1093327 | - | 1749 | WP_146717360.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| NFJ76_RS05265 (1093709) | 1093709..1094920 | + | 1212 | WP_115259906.1 | diaminopropionate ammonia-lyase | - |
| NFJ76_RS05270 (1094955) | 1094955..1096139 | + | 1185 | WP_279271632.1 | YgeY family selenium metabolism-linked hydrolase | - |
| NFJ76_RS05275 (1096209) | 1096209..1097801 | + | 1593 | WP_279271633.1 | D-aminoacylase | VF |
| NFJ76_RS05280 (1097880) | 1097880..1099166 | + | 1287 | WP_115257684.1 | MFS transporter | - |
| NFJ76_RS05285 (1099277) | 1099277..1100416 | - | 1140 | WP_279271634.1 | hypothetical protein | - |
| NFJ76_RS05290 (1101051) | 1101051..1101905 | - | 855 | WP_096756047.1 | MurR/RpiR family transcriptional regulator | - |
| NFJ76_RS05295 (1102198) | 1102198..1103703 | + | 1506 | WP_115257691.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| NFJ76_RS05300 (1103715) | 1103715..1105640 | + | 1926 | WP_279271635.1 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | - |
| NFJ76_RS05305 (1105981) | 1105981..1106967 | + | 987 | WP_279271636.1 | inositol 2-dehydrogenase | - |
| NFJ76_RS05310 (1107006) | 1107006..1107935 | + | 930 | WP_096756051.1 | substrate-binding domain-containing protein | - |
| NFJ76_RS05315 (1108112) | 1108112..1109659 | + | 1548 | WP_279271637.1 | Ribose import ATP-binding protein RbsA | VF |
| NFJ76_RS05320 (1109671) | 1109671..1110699 | + | 1029 | WP_096756053.1 | ABC transporter permease | - |
| NFJ76_RS05325 (1110710) | 1110710..1111843 | + | 1134 | WP_115257694.1 | Gfo/Idh/MocA family oxidoreductase | - |
| NFJ76_RS05330 (1111856) | 1111856..1113760 | + | 1905 | WP_115257695.1 | 5-dehydro-2-deoxygluconokinase | - |
| NFJ76_RS05335 (1113775) | 1113775..1114665 | + | 891 | WP_096756056.1 | myo-inosose-2 dehydratase | - |
| NFJ76_RS05340 (1114675) | 1114675..1115493 | + | 819 | WP_181506668.1 | 5-deoxy-glucuronate isomerase | - |
| NFJ76_RS05345 (1115982) | 1115982..1116302 | - | 321 | WP_131000374.1 | TA system toxin CbtA family protein | Toxin Detail |
| NFJ76_RS05350 (1116336) | 1116336..1116701 | - | 366 | WP_131000373.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| NFJ76_RS05355 (1116733) | 1116733..1116954 | - | 222 | WP_131000372.1 | DUF987 domain-containing protein | - |
| NFJ76_RS05360 (1116963) | 1116963..1117433 | - | 471 | WP_279271638.1 | DNA repair protein RadC | - |
| NFJ76_RS05365 (1117500) | 1117500..1118321 | - | 822 | WP_131000370.1 | DUF932 domain-containing protein | - |
| NFJ76_RS05370 (1118389) | 1118389..1118841 | - | 453 | WP_131000369.1 | hypothetical protein | - |
| NFJ76_RS05375 (1119085) | 1119085..1119888 | - | 804 | WP_131000367.1 | hypothetical protein | - |
| NFJ76_RS05380 (1119908) | 1119908..1120342 | - | 435 | WP_117037059.1 | hypothetical protein | - |
| NFJ76_RS05385 (1120925) | 1120925..1121560 | + | 636 | WP_181212972.1 | hypothetical protein ; Integrase | Integrase |
| NFJ76_RS05390 (1121940) | 1121940..1123490 | - | 1551 | WP_131000365.1 | DUF3987 domain-containing protein | - |
| NFJ76_RS05395 (1123639) | 1123639..1123851 | - | 213 | WP_112014386.1 | AlpA family phage regulatory protein | - |
| NFJ76_RS05400 (1124012) | 1124012..1125253 | + | 1242 | WP_279271639.1 | hypothetical protein | - |
| NFJ76_RS05405 (1125292) | 1125292..1125436 | - | 145 | Protein_1055 | hypothetical protein | - |
| NFJ76_RS05410 (1125766) | 1125766..1128075 | + | 2310 | WP_181212974.1 | AAA family ATPase | - |
| NFJ76_RS05415 (1128072) | 1128072..1130021 | + | 1950 | WP_279271640.1 | UvrD-helicase domain-containing protein | - |
| NFJ76_RS05420 (1130139) | 1130139..1134452 | + | 4314 | WP_279271641.1 | hypothetical protein | - |
| NFJ76_RS05425 (1134574) | 1134574..1134912 | - | 339 | WP_181213151.1 | hypothetical protein | - |
| NFJ76_RS05430 (1134912) | 1134912..1135778 | - | 867 | WP_181212977.1 | hypothetical protein | - |
| NFJ76_RS05435 (1135772) | 1135772..1136671 | - | 900 | WP_279271642.1 | hypothetical protein | - |
| NFJ76_RS05445 (1137747) | 1137747..1138988 | - | 1242 | WP_114647235.1 | Prophage integrase IntA ; Integrase | Integrase |
| NFJ76_RS05450 (1139584) | 1139584..1140684 | + | 1101 | WP_130016703.1 | DNA cytosine methyltransferase | - |
| NFJ76_RS05455 (1140743) | 1140743..1141750 | - | 1008 | WP_279271643.1 | restriction endonuclease | - |
| NFJ76_RS05460 (1142027) | 1142027..1142230 | + | 204 | WP_065806231.1 | AlpA family transcriptional regulator | - |
| NFJ76_RS05465 (1143149) | 1143149..1143526 | - | 378 | WP_130016701.1 | hypothetical protein | - |
| NFJ76_RS05470 (1143563) | 1143563..1144057 | - | 495 | WP_279271644.1 | DUF4755 domain-containing protein | - |
| NFJ76_RS05475 (1144420) | 1144420..1145730 | - | 1311 | WP_279271645.1 | MobQ family relaxase | - |
| NFJ76_RS05480 (1146069) | 1146069..1146254 | + | 186 | WP_279271646.1 | hypothetical protein | - |
| NFJ76_RS05485 (1146251) | 1146251..1146580 | + | 330 | WP_279271647.1 | hypothetical protein | - |
| NFJ76_RS05490 (1146582) | 1146582..1146923 | + | 342 | WP_130016696.1 | hypothetical protein | - |
| NFJ76_RS05495 (1146916) | 1146916..1147326 | + | 411 | WP_130016695.1 | hypothetical protein | - |
| NFJ76_RS05500 (1147323) | 1147323..1147559 | + | 237 | WP_279271648.1 | hypothetical protein | - |
| NFJ76_RS05505 (1147561) | 1147561..1148013 | + | 453 | WP_279271649.1 | hypothetical protein | - |
| NFJ76_RS05510 (1148162) | 1148162..1148395 | - | 234 | WP_130016692.1 | hypothetical protein | - |
| NFJ76_RS05515 (1148451) | 1148451..1149671 | - | 1221 | WP_130016691.1 | Prophage integrase IntA ; Integrase | Integrase |
| NFJ76_RS05525 (1150273) | 1150273..1151436 | - | 1164 | WP_137400253.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| NFJ76_RS05530 (1151444) | 1151444..1153630 | - | 2187 | WP_279271650.1 | type I secretion system permease/ATPase | - |
| NFJ76_RS05535 (1153627) | 1153627..1155036 | - | 1410 | WP_279271651.1 | TolC family outer membrane protein | - |
| NFJ76_RS05540 (1155130) | 1155130..1166346 | - | 11217 | WP_279271652.1 | Ig-like domain-containing protein | - |
| NFJ76_RS05545 (1166927) | 1166927..1167409 | - | 483 | WP_096759347.1 | SsrA-binding protein SmpB | - |
| NFJ76_RS05550 (1167564) | 1167564..1168007 | + | 444 | WP_115257733.1 | type II toxin-antitoxin system toxin RatA | - |
| NFJ76_RS05555 (1167997) | 1167997..1168287 | + | 291 | WP_096759348.1 | RnfH family protein | - |
| NFJ76_RS05560 (1168342) | 1168342..1168686 | - | 345 | WP_115257734.1 | outer membrane protein assembly factor BamE | - |
| NFJ76_RS05565 (1168836) | 1168836..1170497 | - | 1662 | WP_279271653.1 | DNA repair protein RecN | VF |
| NFJ76_RS05570 (1170583) | 1170583..1171461 | - | 879 | WP_096756091.1 | NAD(+) kinase | - |
| NFJ76_RS05575 (1171583) | 1171583..1172176 | + | 594 | WP_096756092.1 | nucleotide exchange factor GrpE | - |
| NFJ76_RS05580 (1172226) | 1172226..1173518 | - | 1293 | WP_135911576.1 | HlyC/CorC family transporter | - |
| NFJ76_RS05585 (1173537) | 1173537..1174328 | - | 792 | WP_096756093.1 | inner membrane protein YpjD | - |
| NFJ76_RS05590 (1174494) | 1174494..1175855 | + | 1362 | WP_096756094.1 | signal recognition particle protein | - |
| NFJ76_RS05595 (1176107) | 1176107..1176355 | + | 249 | WP_003031228.1 | 30S ribosomal protein S16 | - |
| NFJ76_RS05600 (1176374) | 1176374..1176922 | + | 549 | WP_115257736.1 | ribosome maturation factor RimM | - |
| NFJ76_RS05605 (1176967) | 1176967..1177734 | + | 768 | WP_115257737.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| NFJ76_RS05610 (1177774) | 1177774..1178121 | + | 348 | WP_002914145.1 | 50S ribosomal protein L19 | - |
| NFJ76_RS05615 (1178263) | 1178263..1178667 | + | 405 | WP_279271974.1 | DUF2946 domain-containing protein | - |
| NFJ76_RS05620 (1178731) | 1178731..1180092 | + | 1362 | WP_279271654.1 | PepSY-associated TM helix domain-containing protein | - |
| NFJ76_RS05625 (1180097) | 1180097..1180579 | - | 483 | WP_096756098.1 | Peptidoglycan-associated lipoprotein | VF |
| NFJ76_RS05630 (1180592) | 1180592..1181818 | - | 1227 | WP_279271975.1 | Diguanylate cyclase DgcN | VF |
| NFJ76_RS05635 (1181811) | 1181811..1182329 | - | 519 | WP_279271655.1 | YfiR family protein | - |
| NFJ76_RS05640 (1182488) | 1182488..1182862 | - | 375 | WP_096756101.1 | DUF2799 domain-containing protein | - |
| NFJ76_RS05645 (1183078) | 1183078..1184148 | + | 1071 | WP_096756102.1 | 3-deoxy-7-phosphoheptulonate synthase AroF | - |
| NFJ76_RS05650 (1184159) | 1184159..1185280 | + | 1122 | WP_115257741.1 | bifunctional chorismate mutase/prephenate dehydrogenase | - |
| NFJ76_RS05655 (1185328) | 1185328..1186488 | - | 1161 | WP_096756104.1 | bifunctional chorismate mutase/prephenate dehydratase | - |
| NFJ76_RS05660 (1186588) | 1186588..1186635 | - | 48 | WP_101706155.1 | pheA operon leader peptide PheL | - |
| NFJ76_RS05665 (1186740) | 1186740..1187078 | - | 339 | WP_096756105.1 | ribosome-associated translation inhibitor RaiA | - |
| NFJ76_RS05670 (1187348) | 1187348..1188085 | - | 738 | WP_096756107.1 | outer membrane protein assembly factor BamD | - |
| NFJ76_RS05675 (1188217) | 1188217..1189197 | + | 981 | WP_096756108.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| NFJ76_RS05680 (1189194) | 1189194..1189925 | + | 732 | WP_117343909.1 | purine nucleoside phosphorylase YfiH | - |
| NFJ76_RS05685 (1190055) | 1190055..1192628 | + | 2574 | WP_115257744.1 | ATP-dependent chaperone ClpB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|