MGE detailed information
MGE type: Prophage MGE length: 55719 bp
Accession: NZ_CP099084 Location: 4050354..4106072 Organism: Citrobacter freundii strain RHB43-C17 Replicon: chromosome
Accession: NZ_CP099084 Location: 4050354..4106072 Organism: Citrobacter freundii strain RHB43-C17 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK79_RS19485 (4045857) | 4045857..4048697 | - | 2841 | WP_181498629.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| NFK79_RS19490 (4048811) | 4048811..4050112 | - | 1302 | WP_181498630.1 | inorganic triphosphatase | - |
| NFK79_RS19495 (4050354) | 4050354..4050974 | + | 621 | WP_096755626.1 | TIGR04211 family SH3 domain-containing protein | - |
| NFK79_RS19500 (4051037) | 4051037..4052272 | + | 1236 | WP_096755625.1 | multifunctional CCA addition/repair protein | - |
| NFK79_RS19505 (4052371) | 4052371..4053189 | - | 819 | WP_096755624.1 | undecaprenyl-diphosphate phosphatase | - |
| NFK79_RS19510 (4053275) | 4053275..4053643 | - | 369 | WP_096755623.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| NFK79_RS19515 (4053750) | 4053750..4054367 | + | 618 | WP_096759329.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| NFK79_RS19520 (4054408) | 4054408..4055340 | - | 933 | WP_115257462.1 | LysR family transcriptional regulator | - |
| NFK79_RS19525 (4055551) | 4055551..4056462 | + | 912 | WP_096755621.1 | L(+)-tartrate dehydratase subunit alpha | - |
| NFK79_RS19530 (4056459) | 4056459..4057064 | + | 606 | WP_182320136.1 | L(+)-tartrate dehydratase subunit beta | - |
| NFK79_RS19535 (4057113) | 4057113..4058576 | + | 1464 | WP_115257460.1 | anion permease | - |
| NFK79_RS19540 (4058646) | 4058646..4059659 | - | 1014 | WP_096755618.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| NFK79_RS19545 (4059895) | 4059895..4060110 | + | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| NFK79_RS19550 (4060224) | 4060224..4061966 | + | 1743 | WP_096755617.1 | DNA primase | - |
| NFK79_RS19555 (4062116) | 4062116..4063960 | + | 1845 | WP_096755616.1 | RNA polymerase sigma factor RpoD | - |
| NFK79_RS19560 (4064009) | 4064009..4065337 | - | 1329 | WP_181498689.1 | IS4 family transposase IS4 | Transposase |
| NFK79_RS19565 (4065444) | 4065444..4065950 | - | 507 | WP_096755614.1 | G/U mismatch-specific DNA glycosylase | - |
| NFK79_RS19575 (4066308) | 4066308..4066526 | - | 219 | WP_023135249.1 | DNA-binding transcriptional regulator | - |
| NFK79_RS19580 (4066593) | 4066593..4067762 | - | 1170 | WP_279264473.1 | phage late control D family protein | - |
| NFK79_RS19585 (4067759) | 4067759..4068244 | - | 486 | WP_001630830.1 | phage tail protein | - |
| NFK79_RS19590 (4068257) | 4068257..4070698 | - | 2442 | WP_279264474.1 | phage tail tape measure protein | - |
| NFK79_RS19595 (4070691) | 4070691..4070810 | - | 120 | WP_001630833.1 | GpE family phage tail protein | - |
| NFK79_RS19600 (4070843) | 4070843..4071178 | - | 336 | WP_239964261.1 | phage tail assembly protein | - |
| NFK79_RS19605 (4071242) | 4071242..4071760 | - | 519 | WP_001207674.1 | phage major tail tube protein | - |
| NFK79_RS19610 (4071776) | 4071776..4072954 | - | 1179 | WP_279264475.1 | phage tail sheath protein | - |
| NFK79_RS19615 (4073395) | 4073395..4073799 | + | 405 | WP_279264476.1 | tail fiber assembly protein | - |
| NFK79_RS19620 (4073808) | 4073808..4073975 | - | 168 | WP_162873154.1 | hypothetical protein | - |
| NFK79_RS19625 (4073987) | 4073987..4075582 | - | 1596 | WP_279264477.1 | phage tail protein | - |
| NFK79_RS19630 (4075579) | 4075579..4076187 | - | 609 | WP_279264478.1 | phage tail protein I | - |
| NFK79_RS19635 (4076180) | 4076180..4077088 | - | 909 | WP_279264479.1 | baseplate assembly protein | - |
| NFK79_RS19640 (4077095) | 4077095..4077442 | - | 348 | WP_279264480.1 | GPW/gp25 family protein | - |
| NFK79_RS19645 (4077439) | 4077439..4078074 | - | 636 | WP_175098598.1 | phage baseplate assembly protein V | - |
| NFK79_RS19650 (4078143) | 4078143..4078592 | - | 450 | WP_175098597.1 | phage virion morphogenesis protein | - |
| NFK79_RS19655 (4078585) | 4078585..4079052 | - | 468 | WP_001437785.1 | phage tail protein | - |
| NFK79_RS19660 (4079015) | 4079015..4079257 | - | 243 | WP_270093768.1 | Rz1-like lysis system protein LysC | - |
| NFK79_RS19665 (4079160) | 4079160..4079570 | - | 411 | WP_279264817.1 | Rz-like lysis system protein LysB | - |
| NFK79_RS19670 (4079570) | 4079570..4080001 | - | 432 | WP_279264481.1 | DNZ54_00345 family protein | - |
| NFK79_RS19675 (4079998) | 4079998..4080510 | - | 513 | WP_279264482.1 | lysozyme | - |
| NFK79_RS19680 (4080494) | 4080494..4080715 | - | 222 | WP_001437784.1 | HP1 family phage holin | - |
| NFK79_RS19685 (4080706) | 4080706..4080909 | - | 204 | WP_042325371.1 | tail protein X | - |
| NFK79_RS19690 (4080909) | 4080909..4081418 | - | 510 | WP_000214251.1 | head completion/stabilization protein | - |
| NFK79_RS19695 (4081512) | 4081512..4082261 | - | 750 | WP_181626709.1 | terminase endonuclease subunit | - |
| NFK79_RS19700 (4082266) | 4082266..4083333 | - | 1068 | WP_175098594.1 | phage major capsid protein, P2 family | - |
| NFK79_RS19705 (4083409) | 4083409..4084263 | - | 855 | WP_279264483.1 | GPO family capsid scaffolding protein | - |
| NFK79_RS19710 (4084429) | 4084429..4086198 | + | 1770 | WP_279264484.1 | terminase ATPase subunit family protein | - |
| NFK79_RS19715 (4086198) | 4086198..4086944 | + | 747 | WP_279264485.1 | terminase family protein | - |
| NFK79_RS19720 (4086941) | 4086941..4087963 | + | 1023 | WP_279264486.1 | phage portal protein | - |
| NFK79_RS19725 (4088447) | 4088447..4089178 | - | 732 | WP_105607235.1 | hypothetical protein | - |
| NFK79_RS19730 (4089260) | 4089260..4089700 | - | 441 | WP_279264487.1 | DinI family protein | - |
| NFK79_RS19735 (4089819) | 4089819..4092041 | - | 2223 | WP_279264488.1 | replication endonuclease | - |
| NFK79_RS19740 (4092032) | 4092032..4092313 | - | 282 | WP_279264489.1 | DUF3850 domain-containing protein | - |
| NFK79_RS19745 (4092310) | 4092310..4092582 | - | 273 | WP_279264490.1 | DUF5405 family protein | - |
| NFK79_RS19750 (4092579) | 4092579..4093163 | - | 585 | WP_057519812.1 | 3'-5' exonuclease | - |
| NFK79_RS19755 (4093160) | 4093160..4093387 | - | 228 | WP_279264491.1 | TraR/DksA family transcriptional regulator | - |
| NFK79_RS19760 (4093387) | 4093387..4093614 | - | 228 | WP_001246237.1 | DUF2732 domain-containing protein | - |
| NFK79_RS19765 (4093682) | 4093682..4094020 | - | 339 | WP_026005870.1 | DUF5347 domain-containing protein | - |
| NFK79_RS19770 (4093984) | 4093984..4094184 | - | 201 | WP_279264492.1 | DUF2724 domain-containing protein | - |
| NFK79_RS19775 (4094192) | 4094192..4094701 | - | 510 | WP_110408942.1 | phage regulatory CII family protein | - |
| NFK79_RS19780 (4094732) | 4094732..4094995 | - | 264 | WP_279264493.1 | hypothetical protein | - |
| NFK79_RS19785 (4095130) | 4095130..4095717 | + | 588 | WP_279264494.1 | phage repressor protein CI | - |
| NFK79_RS19790 (4095717) | 4095717..4096766 | + | 1050 | WP_279264495.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| NFK79_RS19795 (4097041) | 4097041..4097382 | - | 342 | WP_015063033.1 | TA system toxin CbtA family protein | Toxin Detail |
| NFK79_RS19800 (4097403) | 4097403..4097720 | - | 318 | WP_035893676.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| NFK79_RS19805 (4097739) | 4097739..4097960 | - | 222 | WP_015063035.1 | DUF987 domain-containing protein | - |
| NFK79_RS19810 (4097970) | 4097970..4098446 | - | 477 | WP_015063036.1 | RadC family protein | - |
| NFK79_RS19815 (4098462) | 4098462..4098941 | - | 480 | WP_015063037.1 | antirestriction protein | - |
| NFK79_RS19825 (4100608) | 4100608..4102803 | - | 2196 | WP_035893672.1 | DEAD/DEAH box helicase | - |
| NFK79_RS19830 (4102800) | 4102800..4104116 | - | 1317 | Protein_3884 | ATP-binding protein | - |
| NFK79_RS19835 (4104120) | 4104120..4104899 | - | 780 | Protein_3885 | tellurite resistance TerB C-terminal domain-containing protein | - |
| NFK79_RS19845 (4106170) | 4106170..4107702 | - | 1533 | Protein_3887 | TerB N-terminal domain-containing protein | - |
| NFK79_RS19850 (4108276) | 4108276..4109199 | + | 924 | WP_227745126.1 | phage exclusion protein Lit family protein | - |
| NFK79_RS19855 (4109501) | 4109501..4109968 | - | 468 | WP_015063048.1 | hypothetical protein | - |
| NFK79_RS19860 (4109993) | 4109993..4110436 | - | 444 | WP_015063049.1 | hypothetical protein | - |
| NFK79_RS19865 (4110436) | 4110436..4110672 | - | 237 | WP_015063050.1 | protein YpjK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|