MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 76483 bp
Accession: NZ_CP098725 Location: 1..76483 Organism: Yersinia ruckeri strain NVI-10571 Replicon: plasmid pYR4
Accession: NZ_CP098725 Location: 1..76483 Organism: Yersinia ruckeri strain NVI-10571 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND438_RS17090 (ND438_17085) | 193..350 | - | 158 | Protein_1 | IS5 family transposase ISSba21 | Transposase |
| ND438_RS17095 (ND438_17090) | 356..437 | - | 82 | Protein_2 | regulator protein FrmR | - |
| ND438_RS17100 (ND438_17095) | 873..2270 | - | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| ND438_RS17105 (ND438_17100) | 2307..2879 | - | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| ND438_RS17110 (ND438_17105) | 3011..3601 | - | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| ND438_RS17115 (ND438_17110) | 4070..5272 | + | 1203 | WP_126940155.1 | hypothetical protein | - |
| ND438_RS17120 (ND438_17115) | 5561..5926 | + | 366 | Protein_7 | Tn3 family transposase | - |
| ND438_RS17125 (ND438_17120) | 6957..7907 | - | 951 | WP_126940197.1 | Replication protein | - |
| ND438_RS17130 (ND438_17125) | 8804..9514 | + | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| ND438_RS17135 (ND438_17130) | 9571..9732 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| ND438_RS17140 (ND438_17135) | 10029..10400 | - | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| ND438_RS17145 (ND438_17140) | 10695..11204 | + | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| ND438_RS17150 (ND438_17145) | 11432..12133 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| ND438_RS17155 (ND438_17150) | 12196..12396 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| ND438_RS17160 (ND438_17155) | 12474..13517 | + | 1044 | WP_162486785.1 | hypothetical protein | VF |
| ND438_RS17165 (ND438_17160) | 13517..13942 | + | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| ND438_RS17170 (ND438_17165) | 13963..15585 | + | 1623 | WP_248575002.1 | hypothetical protein | VF |
| ND438_RS17175 (ND438_17170) | 15765..16313 | + | 549 | WP_162486786.1 | hypothetical protein | - |
| ND438_RS17180 (ND438_17175) | 16317..17630 | + | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| ND438_RS17185 (ND438_17180) | 17617..18204 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| ND438_RS17190 (ND438_17185) | 18208..19701 | + | 1494 | WP_069971730.1 | hypothetical protein | VF |
| ND438_RS17195 (ND438_17190) | 19698..20840 | + | 1143 | WP_238692898.1 | hypothetical protein | VF |
| ND438_RS17200 (ND438_17195) | 20878..21471 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| ND438_RS17205 (ND438_17200) | 21533..22018 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| ND438_RS17210 (ND438_17205) | 22018..22668 | + | 651 | WP_038251878.1 | hypothetical protein | VF |
| ND438_RS17215 (ND438_17210) | 22665..24038 | + | 1374 | WP_099511713.1 | hypothetical protein | VF |
| ND438_RS17220 (ND438_17215) | 24564..25019 | + | 456 | WP_004720812.1 | hypothetical protein | VF |
| ND438_RS17225 (ND438_17220) | 25016..25804 | + | 789 | WP_038251876.1 | hypothetical protein | VF |
| ND438_RS17230 (ND438_17225) | 25804..26958 | + | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| ND438_RS17235 (ND438_17230) | 26955..27215 | + | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| ND438_RS17240 (ND438_17235) | 27231..30584 | + | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| ND438_RS17245 (ND438_17240) | 30589..31047 | + | 459 | WP_238692899.1 | hypothetical protein | - |
| ND438_RS17250 (ND438_17245) | 31064..31786 | + | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| ND438_RS17255 (ND438_17250) | 31805..32800 | + | 996 | WP_162486788.1 | hypothetical protein | VF |
| ND438_RS17260 (ND438_17255) | 32803..34056 | + | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| ND438_RS17265 (ND438_17260) | 34116..34823 | + | 708 | WP_126940165.1 | hypothetical protein | - |
| ND438_RS17270 (ND438_17265) | 34823..35350 | + | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| ND438_RS17275 (ND438_17270) | 35375..35758 | + | 384 | WP_004720828.1 | hypothetical protein | - |
| ND438_RS17280 (ND438_17275) | 35819..36775 | + | 957 | WP_004720829.1 | hypothetical protein | - |
| ND438_RS17285 (ND438_17280) | 36798..39875 | + | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| ND438_RS17290 (ND438_17285) | 39889..41082 | + | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| ND438_RS17295 (ND438_17290) | 41082..41687 | + | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| ND438_RS17300 (ND438_17295) | 41754..43895 | + | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| ND438_RS17305 (ND438_17300) | 44001..44219 | + | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| ND438_RS17310 (ND438_17305) | 44241..44921 | + | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ND438_RS17315 (ND438_17310) | 45017..46300 | + | 1284 | WP_004720838.1 | hypothetical protein | - |
| ND438_RS17320 (ND438_17315) | 46305..47369 | + | 1065 | WP_126940169.1 | DsbC family protein | - |
| ND438_RS17325 (ND438_17320) | 47380..49680 | + | 2301 | WP_126940170.1 | hypothetical protein | VF |
| ND438_RS17330 (ND438_17325) | 49767..50303 | + | 537 | WP_126940171.1 | Phospholipase D | VF |
| ND438_RS17335 (ND438_17330) | 50404..53106 | - | 2703 | WP_126940172.1 | DNA repair protein | - |
| ND438_RS17340 (ND438_17335) | 53486..54535 | - | 1050 | WP_126940173.1 | Abi family protein | - |
| ND438_RS17345 (ND438_17340) | 54832..56757 | - | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| ND438_RS17350 (ND438_17345) | 56759..57103 | - | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| ND438_RS17355 (ND438_17350) | 57372..57695 | + | 324 | WP_004720850.1 | hypothetical protein | - |
| ND438_RS17360 (ND438_17355) | 58234..59047 | - | 814 | Protein_55 | DUF932 domain-containing protein | - |
| ND438_RS17365 (ND438_17360) | 59535..59831 | - | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| ND438_RS17370 (ND438_17365) | 59877..60200 | - | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND438_RS17375 (ND438_17370) | 60352..60585 | + | 234 | WP_038251853.1 | hypothetical protein | - |
| ND438_RS17380 (ND438_17375) | 60593..61090 | - | 498 | WP_126940174.1 | hypothetical protein | - |
| ND438_RS17385 (ND438_17380) | 61087..61446 | - | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| ND438_RS17390 (ND438_17385) | 62205..62915 | - | 711 | WP_126940176.1 | N-6 DNA methylase | - |
| ND438_RS17395 (ND438_17390) | 63061..63207 | - | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| ND438_RS17400 (ND438_17395) | 63293..63649 | - | 357 | WP_126940178.1 | hypothetical protein | - |
| ND438_RS17405 (ND438_17400) | 64403..64603 | - | 201 | WP_126940179.1 | hypothetical protein | - |
| ND438_RS17410 (ND438_17405) | 64646..65152 | - | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| ND438_RS17415 (ND438_17410) | 65544..66323 | - | 780 | WP_126940182.1 | hypothetical protein | - |
| ND438_RS17420 (ND438_17415) | 66605..67075 | - | 471 | WP_126940183.1 | hypothetical protein | - |
| ND438_RS17425 (ND438_17420) | 67414..67815 | - | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| ND438_RS17430 (ND438_17425) | 67817..68791 | - | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| ND438_RS17435 (ND438_17430) | 69095..69748 | + | 654 | WP_126940185.1 | AAA family ATPase | - |
| ND438_RS17440 (ND438_17435) | 69782..70063 | + | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| ND438_RS17445 (ND438_17440) | 70264..70524 | - | 261 | WP_267263026.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| ND438_RS17450 (ND438_17445) | 70575..71270 | + | 696 | WP_126940192.1 | IS6 family transposase ISEas1 | Transposase |
| ND438_RS17455 (ND438_17450) | 71344..71922 | - | 579 | WP_126940193.1 | hypothetical protein | - |
| ND438_RS17460 (ND438_17455) | 72147..72383 | + | 237 | Protein_75 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND438_RS17465 (ND438_17460) | 72411..73247 | - | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| ND438_RS17470 (ND438_17465) | 73317..73715 | - | 399 | WP_126940196.1 | VOC family protein | - |
| ND438_RS17475 (ND438_17470) | 73759..74868 | - | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| ND438_RS17480 (ND438_17475) | 74903..75178 | - | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|