MGE detailed information
MGE type: Prophage MGE length: 22652 bp
Accession: NZ_CP098724 Location: 2795348..2817999 Organism: Yersinia ruckeri strain NVI-10571 Replicon: chromosome
Accession: NZ_CP098724 Location: 2795348..2817999 Organism: Yersinia ruckeri strain NVI-10571 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND438_RS12755 (ND438_12750) | 2791103..2792764 | + | 1662 | WP_004718118.1 | DNA repair protein RecN | - |
| ND438_RS12760 (ND438_12755) | 2792879..2793220 | + | 342 | WP_038241300.1 | outer membrane protein assembly factor BamE | - |
| ND438_RS12765 (ND438_12760) | 2793362..2793646 | - | 285 | WP_038241298.1 | RnfH family protein | - |
| ND438_RS12770 (ND438_12765) | 2793627..2794073 | - | 447 | WP_038241296.1 | type II toxin-antitoxin system RatA family toxin | - |
| ND438_RS12775 (ND438_12770) | 2794234..2794716 | + | 483 | WP_038241433.1 | SsrA-binding protein SmpB | - |
| ND438_RS12785 (ND438_12780) | 2795348..2796589 | + | 1242 | WP_096823565.1 | Prophage integrase IntA ; Integrase | Integrase |
| ND438_RS12790 (ND438_12785) | 2796869..2797672 | + | 804 | WP_096823566.1 | HNH endonuclease signature motif containing protein | - |
| ND438_RS12795 (ND438_12790) | 2797944..2798432 | - | 489 | Protein_2484 | hypothetical protein | - |
| ND438_RS12805 (ND438_12800) | 2799661..2804610 | - | 4950 | WP_096823567.1 | AAA domain-containing protein | - |
| ND438_RS12810 (ND438_12805) | 2805080..2805733 | - | 654 | Protein_2487 | IS3 family transposase ISEcl1 | Transposase |
| ND438_RS12815 (ND438_12810) | 2805908..2806783 | + | 876 | WP_096823568.1 | GTPase family protein | - |
| ND438_RS12820 (ND438_12815) | 2806986..2807687 | + | 702 | WP_050297207.1 | WYL domain-containing protein | - |
| ND438_RS12825 (ND438_12820) | 2807693..2808259 | + | 567 | WP_096823569.1 | hypothetical protein | - |
| ND438_RS12830 (ND438_12825) | 2808298..2808750 | + | 453 | WP_096823570.1 | hypothetical protein | - |
| ND438_RS12835 (ND438_12830) | 2808747..2809185 | + | 439 | Protein_2492 | IrmA family protein | - |
| ND438_RS12840 (ND438_12835) | 2809258..2809524 | + | 267 | Protein_2493 | DUF905 family protein | - |
| ND438_RS12845 (ND438_12840) | 2809597..2810418 | + | 822 | WP_096823571.1 | DUF932 domain-containing protein | - |
| ND438_RS12850 (ND438_12845) | 2810449..2810892 | + | 444 | WP_096823572.1 | antirestriction protein | - |
| ND438_RS12855 (ND438_12850) | 2810905..2811447 | + | 543 | WP_096823573.1 | DNA repair protein RadC | - |
| ND438_RS12860 (ND438_12855) | 2811444..2811665 | + | 222 | WP_069325310.1 | DUF987 domain-containing protein | - |
| ND438_RS12865 (ND438_12860) | 2811691..2812056 | + | 366 | WP_096823574.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| ND438_RS12870 (ND438_12865) | 2812095..2812424 | + | 330 | WP_096823575.1 | TA system toxin CbtA family protein | Toxin Detail |
| ND438_RS12875 (ND438_12870) | 2812820..2813749 | + | 930 | Protein_2500 | Prophage integrase IntA ; Integrase | Integrase |
| ND438_RS12880 (ND438_12875) | 2813995..2814549 | + | 555 | WP_096823577.1 | DUF4942 domain-containing protein | - |
| ND438_RS12885 (ND438_12880) | 2814658..2814981 | + | 324 | WP_038277221.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ND438_RS12890 (ND438_12885) | 2814968..2815249 | + | 282 | WP_038277219.1 | helix-turn-helix transcriptional regulator | - |
| ND438_RS12895 (ND438_12890) | 2815458..2816998 | - | 1541 | Protein_2504 | IS3 family transposase ISKpn38 | Transposase |
| ND438_RS12900 (ND438_12895) | 2817071..2817468 | - | 398 | Protein_2505 | IS3 family transposase IS1400 | Transposase |
| ND438_RS12905 (ND438_12900) | 2817697..2817999 | + | 303 | WP_096823578.1 | hypothetical protein | - |
| ND438_RS12910 (ND438_12905) | 2818094..2818816 | + | 723 | WP_071704641.1 | fimbria/pilus periplasmic chaperone | - |
| ND438_RS12915 (ND438_12910) | 2818952..2821471 | + | 2520 | WP_234049469.1 | fimbria/pilus outer membrane usher protein | - |
| ND438_RS12920 (ND438_12915) | 2821518..2822081 | + | 564 | WP_051847020.1 | fimbrial protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|