MGE detailed information
MGE type: Prophage MGE length: 70882 bp
Accession: NZ_CP098724 Location: 2008247..2079128 Organism: Yersinia ruckeri strain NVI-10571 Replicon: chromosome
Accession: NZ_CP098724 Location: 2008247..2079128 Organism: Yersinia ruckeri strain NVI-10571 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND438_RS09025 (ND438_09020) | 2003486..2004733 | + | 1248 | WP_071704468.1 | membrane integrity lipid transport subunit YebS | - |
| ND438_RS09030 (ND438_09025) | 2004702..2007332 | + | 2631 | WP_038276011.1 | PqiB family protein | - |
| ND438_RS09035 (ND438_09030) | 2008247..2009956 | + | 1710 | WP_004721693.1 | diguanylate cyclase | - |
| ND438_RS09040 (ND438_09035) | 2010067..2010309 | + | 243 | WP_004721695.1 | DUF1480 family protein | - |
| ND438_RS09045 (ND438_09040) | 2010429..2010827 | - | 399 | WP_004721697.1 | ASCH domain-containing protein | - |
| ND438_RS09050 (ND438_09045) | 2010971..2011090 | + | 120 | WP_230675747.1 | small membrane protein YniD | - |
| ND438_RS09055 (ND438_09050) | 2011087..2011257 | - | 171 | WP_004721699.1 | YnfU family zinc-binding protein | - |
| ND438_RS09060 (ND438_09055) | 2011497..2011730 | - | 234 | WP_004721700.1 | hypothetical protein | - |
| ND438_RS09065 (ND438_09060) | 2012257..2012916 | - | 660 | WP_038242727.1 | DUF799 domain-containing protein | - |
| ND438_RS09070 (ND438_09065) | 2012913..2013269 | - | 357 | WP_038242728.1 | DUF4810 domain-containing protein | - |
| ND438_RS09075 (ND438_09070) | 2013288..2013959 | - | 672 | WP_038251427.1 | CsgG/HfaB family protein | - |
| ND438_RS09080 (ND438_09075) | 2014772..2014951 | + | 180 | WP_038242732.1 | GhoT/OrtT family toxin | - |
| ND438_RS09085 (ND438_09080) | 2015491..2015874 | - | 384 | WP_238692839.1 | hypothetical protein | - |
| ND438_RS09090 (ND438_09085) | 2017082..2017711 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| ND438_RS09095 (ND438_09090) | 2017936..2018604 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| ND438_RS09100 (ND438_09095) | 2019345..2020490 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND438_RS09105 (ND438_09100) | 2020567..2021214 | + | 648 | WP_238692846.1 | hypothetical protein ; Integrase | Integrase |
| ND438_RS09110 (ND438_09105) | 2021513..2021680 | + | 168 | WP_193553623.1 | hypothetical protein | - |
| ND438_RS09115 (ND438_09110) | 2021985..2024276 | - | 2292 | WP_096823432.1 | AAA family ATPase | - |
| ND438_RS09120 (ND438_09115) | 2024760..2026487 | - | 1728 | WP_096823433.1 | ISNCY family transposase ISPa4 | Transposase |
| ND438_RS09125 (ND438_09120) | 2026732..2035080 | - | 8349 | WP_096823434.1 | LPD5 domain-containing protein | - |
| ND438_RS09130 (ND438_09125) | 2035346..2035507 | - | 162 | WP_157836120.1 | hypothetical protein | - |
| ND438_RS09135 (ND438_09130) | 2035582..2036970 | - | 1389 | WP_096823435.1 | hypothetical protein | - |
| ND438_RS09140 (ND438_09135) | 2036983..2037243 | - | 261 | WP_096823436.1 | bacteriocin | - |
| ND438_RS09145 (ND438_09140) | 2037243..2037626 | - | 384 | WP_096823437.1 | hypothetical protein | - |
| ND438_RS09150 (ND438_09145) | 2037629..2038288 | - | 660 | WP_096823438.1 | hypothetical protein | - |
| ND438_RS09155 (ND438_09150) | 2038544..2038918 | - | 375 | WP_096823439.1 | hypothetical protein | - |
| ND438_RS09160 (ND438_09155) | 2038893..2039921 | - | 1029 | WP_096823440.1 | hypothetical protein | - |
| ND438_RS09165 (ND438_09160) | 2039988..2041202 | - | 1215 | WP_038246004.1 | DUF1983 domain-containing protein | - |
| ND438_RS09170 (ND438_09165) | 2041199..2042827 | - | 1629 | WP_096823441.1 | hypothetical protein | - |
| ND438_RS09175 (ND438_09170) | 2043153..2043584 | + | 432 | Protein_1782 | Hcp family type VI secretion system effector | - |
| ND438_RS09180 (ND438_09175) | 2043706..2043852 | - | 147 | WP_157836125.1 | hypothetical protein | - |
| ND438_RS09185 (ND438_09180) | 2044237..2046606 | - | 2370 | WP_096823442.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ND438_RS09190 (ND438_09185) | 2046603..2047256 | - | 654 | WP_096823443.1 | hypothetical protein | - |
| ND438_RS09195 (ND438_09190) | 2047256..2047843 | - | 588 | WP_096823444.1 | hypothetical protein | - |
| ND438_RS09200 (ND438_09195) | 2047846..2048286 | - | 441 | WP_038245291.1 | hypothetical protein | - |
| ND438_RS09205 (ND438_09200) | 2048341..2048724 | - | 384 | WP_096823445.1 | hypothetical protein | - |
| ND438_RS09210 (ND438_09205) | 2048787..2050010 | - | 1224 | WP_038245287.1 | N4-gp56 family major capsid protein | - |
| ND438_RS09215 (ND438_09210) | 2050071..2051123 | - | 1053 | WP_096823446.1 | hypothetical protein | - |
| ND438_RS09220 (ND438_09215) | 2051394..2053520 | - | 2127 | WP_096823447.1 | portal protein | - |
| ND438_RS09225 (ND438_09220) | 2053520..2055184 | - | 1665 | WP_096823679.1 | terminase | - |
| ND438_RS09230 (ND438_09225) | 2055223..2056080 | - | 858 | WP_096823448.1 | terminase | - |
| ND438_RS09235 (ND438_09230) | 2056146..2056490 | - | 345 | WP_051847063.1 | Gp49 family protein | - |
| ND438_RS09240 (ND438_09235) | 2056487..2057029 | - | 543 | WP_096823449.1 | DUF2570 domain-containing protein | - |
| ND438_RS09245 (ND438_09240) | 2057161..2057643 | - | 483 | WP_162486782.1 | lysozyme | - |
| ND438_RS09250 (ND438_09245) | 2057649..2057861 | - | 213 | WP_038245276.1 | class II holin family protein | - |
| ND438_RS09255 (ND438_09250) | 2058034..2058843 | - | 810 | WP_096823451.1 | hypothetical protein | - |
| ND438_RS09260 (ND438_09255) | 2058934..2059317 | - | 384 | WP_096823452.1 | hypothetical protein | - |
| ND438_RS09265 (ND438_09260) | 2059342..2059812 | - | 471 | WP_096823453.1 | VRR-NUC domain-containing protein | - |
| ND438_RS09270 (ND438_09265) | 2059805..2060137 | - | 333 | WP_096823454.1 | DUF1364 domain-containing protein | - |
| ND438_RS09275 (ND438_09270) | 2060139..2060786 | - | 648 | WP_096823455.1 | DUF1367 family protein | - |
| ND438_RS09280 (ND438_09275) | 2060783..2062795 | - | 2013 | WP_096823456.1 | MT-A70 family methyltransferase | - |
| ND438_RS09285 (ND438_09280) | 2062792..2063718 | - | 927 | WP_096823457.1 | site-specific DNA-methyltransferase | - |
| ND438_RS09290 (ND438_09285) | 2063715..2064062 | - | 348 | WP_096823458.1 | hypothetical protein | - |
| ND438_RS09295 (ND438_09290) | 2064062..2064232 | - | 171 | WP_238692875.1 | DNA translocase FtsK | - |
| ND438_RS09300 (ND438_09295) | 2064299..2065198 | - | 900 | Protein_1807 | recombination-associated protein RdgC | - |
| ND438_RS09305 (ND438_09300) | 2065202..2065975 | - | 774 | WP_096823460.1 | hypothetical protein | - |
| ND438_RS09310 (ND438_09305) | 2065978..2066823 | - | 846 | WP_096823461.1 | hypothetical protein | - |
| ND438_RS09315 (ND438_09310) | 2066832..2067011 | - | 180 | WP_096823462.1 | hypothetical protein | - |
| ND438_RS09320 (ND438_09315) | 2067008..2067370 | - | 363 | WP_096823463.1 | hypothetical protein | - |
| ND438_RS09325 (ND438_09320) | 2067456..2067761 | + | 306 | WP_038243388.1 | hypothetical protein | - |
| ND438_RS09330 (ND438_09325) | 2067843..2068109 | - | 267 | WP_096823464.1 | hypothetical protein | - |
| ND438_RS09335 (ND438_09330) | 2068219..2068890 | + | 672 | WP_096823465.1 | S24 family peptidase | - |
| ND438_RS09340 (ND438_09335) | 2068906..2069256 | + | 351 | WP_096823466.1 | hypothetical protein | - |
| ND438_RS09345 (ND438_09340) | 2069530..2069775 | + | 246 | WP_126940131.1 | hypothetical protein | - |
| ND438_RS09350 (ND438_09345) | 2069858..2070127 | + | 270 | WP_096823468.1 | KTSC domain-containing protein | - |
| ND438_RS09355 (ND438_09350) | 2070167..2070637 | + | 471 | WP_096823469.1 | zinc-finger-containing protein | - |
| ND438_RS09360 (ND438_09355) | 2070653..2070979 | + | 327 | WP_126940132.1 | hypothetical protein | - |
| ND438_RS09365 (ND438_09360) | 2071280..2072125 | + | 846 | WP_238692848.1 | phage recombination protein Bet | - |
| ND438_RS09370 (ND438_09365) | 2072112..2073716 | + | 1605 | WP_096823471.1 | YqaJ viral recombinase family protein | - |
| ND438_RS09375 (ND438_09370) | 2073761..2074900 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND438_RS09380 (ND438_09375) | 2074897..2075325 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| ND438_RS09385 (ND438_09380) | 2075390..2076226 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| ND438_RS09390 (ND438_09385) | 2076370..2076543 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| ND438_RS09395 (ND438_09390) | 2076734..2076988 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| ND438_RS09400 (ND438_09395) | 2077105..2077374 | + | 270 | WP_096823474.1 | excisionase | - |
| ND438_RS09405 (ND438_09400) | 2077349..2078458 | + | 1110 | WP_162486764.1 | hypothetical protein ; Integrase | Integrase |
| - | 2078531..2078677 | + | 147 | - | - | Antitoxin Detail |
| - | 2078535..2078628 | - | 94 | - | - | Toxin Detail |
| ND438_RS09410 (ND438_09405) | 2078787..2079128 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND438_RS09415 (ND438_09410) | 2079223..2080107 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND438_RS09420 (ND438_09415) | 2080109..2080495 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND438_RS09425 (ND438_09420) | 2080900..2081415 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND438_RS09430 (ND438_09425) | 2081818..2082048 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND438_RS09435 (ND438_09430) | 2082171..2083121 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|