Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078531..2078677 | Replicon | chromosome |
| Accession | NZ_CP098724 | ||
| Organism | Yersinia ruckeri strain NVI-10571 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078535..2078628 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078531..2078677 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND438_RS09375 (ND438_09370) | 2073761..2074900 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND438_RS09380 (ND438_09375) | 2074897..2075325 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| ND438_RS09385 (ND438_09380) | 2075390..2076226 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| ND438_RS09390 (ND438_09385) | 2076370..2076543 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| ND438_RS09395 (ND438_09390) | 2076734..2076988 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| ND438_RS09400 (ND438_09395) | 2077105..2077374 | + | 270 | WP_096823474.1 | excisionase | - |
| ND438_RS09405 (ND438_09400) | 2077349..2078458 | + | 1110 | WP_162486764.1 | tyrosine-type recombinase/integrase | - |
| - | 2078531..2078677 | + | 147 | - | - | Antitoxin |
| - | 2078535..2078628 | - | 94 | - | - | Toxin |
| ND438_RS09410 (ND438_09405) | 2078787..2079128 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND438_RS09415 (ND438_09410) | 2079223..2080107 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND438_RS09420 (ND438_09415) | 2080109..2080495 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND438_RS09425 (ND438_09420) | 2080900..2081415 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND438_RS09430 (ND438_09425) | 2081818..2082048 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND438_RS09435 (ND438_09430) | 2082171..2083121 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2008247..2079128 | 70881 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247916 NZ_CP098724:c2078628-2078535 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT247916 NZ_CP098724:2078531-2078677 [Yersinia ruckeri]
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
