MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 115590 bp
Accession: NZ_CP098717 Location: 1..115590 Organism: Yersinia ruckeri strain NVI-11294 Replicon: plasmid pYR4
Accession: NZ_CP098717 Location: 1..115590 Organism: Yersinia ruckeri strain NVI-11294 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND011_RS17455 (ND011_17445) | 304..873 | - | 570 | WP_071666761.1 | DUF2313 domain-containing protein | - |
| ND011_RS17460 (ND011_17450) | 870..1931 | - | 1062 | WP_071666760.1 | baseplate J/gp47 family protein | - |
| ND011_RS17465 (ND011_17455) | 1931..2281 | - | 351 | WP_071666759.1 | phage GP46 family protein | - |
| ND011_RS17470 (ND011_17460) | 2336..2986 | - | 651 | WP_071666758.1 | phage baseplate assembly protein V | - |
| ND011_RS17475 (ND011_17465) | 2976..4190 | - | 1215 | WP_071666757.1 | phage tail protein | - |
| ND011_RS17480 (ND011_17470) | 4174..5490 | - | 1317 | WP_071666756.1 | DNA circularization N-terminal domain-containing protein | - |
| ND011_RS17485 (ND011_17475) | 5487..7655 | - | 2169 | WP_071666755.1 | phage tail tape measure protein | - |
| ND011_RS17490 (ND011_17480) | 7793..8179 | - | 387 | WP_071666754.1 | hypothetical protein | - |
| ND011_RS17495 (ND011_17485) | 8179..8556 | - | 378 | WP_032898430.1 | hypothetical protein | - |
| ND011_RS17500 (ND011_17490) | 8569..9990 | - | 1422 | WP_071666753.1 | phage tail sheath C-terminal domain-containing protein | - |
| ND011_RS17505 (ND011_17495) | 9977..10237 | - | 261 | WP_170856011.1 | DUF2635 domain-containing protein | - |
| ND011_RS17510 (ND011_17500) | 10218..10874 | - | 657 | WP_071666752.1 | DUF1834 family protein | - |
| ND011_RS17515 (ND011_17505) | 10871..11299 | - | 429 | WP_071666751.1 | DUF1320 family protein | - |
| ND011_RS17520 (ND011_17510) | 11311..11766 | - | 456 | WP_071666750.1 | HI1506-related protein | - |
| ND011_RS17525 (ND011_17515) | 11766..12674 | - | 909 | WP_071666749.1 | Mu-like prophage major head subunit gpT family protein | - |
| ND011_RS17530 (ND011_17520) | 12685..13080 | - | 396 | WP_071666748.1 | hypothetical protein | - |
| ND011_RS17535 (ND011_17525) | 13073..14179 | - | 1107 | WP_071666747.1 | phage protease | - |
| ND011_RS17540 (ND011_17530) | 14413..14964 | - | 552 | WP_071666746.1 | phage virion morphogenesis protein | - |
| ND011_RS17545 (ND011_17535) | 14964..16226 | - | 1263 | WP_071666745.1 | phage minor head protein | - |
| ND011_RS17550 (ND011_17540) | 16213..17793 | - | 1581 | WP_071666744.1 | DUF935 domain-containing protein | - |
| ND011_RS17555 (ND011_17545) | 17795..19450 | - | 1656 | WP_071666743.1 | phage terminase large subunit | - |
| ND011_RS17560 (ND011_17550) | 19707..19958 | - | 252 | WP_071666741.1 | hypothetical protein | - |
| ND011_RS17565 (ND011_17555) | 19951..20451 | - | 501 | WP_071666740.1 | DUF1804 family protein | - |
| ND011_RS17570 (ND011_17560) | 20454..20741 | - | 288 | WP_071666739.1 | hypothetical protein | - |
| ND011_RS17575 (ND011_17565) | 20738..20980 | - | 243 | WP_012303398.1 | hypothetical protein | - |
| ND011_RS17580 (ND011_17570) | 20977..21558 | - | 582 | WP_071666738.1 | hypothetical protein | - |
| ND011_RS17585 (ND011_17575) | 21542..21799 | - | 258 | WP_071666737.1 | hypothetical protein | - |
| ND011_RS17590 (ND011_17580) | 21796..22338 | - | 543 | WP_071666736.1 | glycosyl hydrolase 108 family protein | - |
| ND011_RS17595 (ND011_17585) | 22482..22958 | - | 477 | WP_139238505.1 | hypothetical protein | - |
| ND011_RS17600 (ND011_17590) | 22971..23405 | - | 435 | WP_071666734.1 | Mor transcription activator family protein | - |
| ND011_RS17605 (ND011_17595) | 23405..23806 | - | 402 | WP_071666733.1 | regulatory protein GemA | - |
| ND011_RS17610 (ND011_17600) | 23791..24264 | - | 474 | WP_071666732.1 | hypothetical protein | - |
| ND011_RS17615 (ND011_17605) | 24257..24649 | - | 393 | WP_071666731.1 | hypothetical protein | - |
| ND011_RS17620 (ND011_17610) | 24646..24828 | - | 183 | WP_071666730.1 | hypothetical protein | - |
| ND011_RS17625 (ND011_17615) | 25101..25322 | - | 222 | WP_071666728.1 | hypothetical protein | - |
| ND011_RS17630 (ND011_17620) | 25319..25786 | - | 468 | WP_071666727.1 | ANR family transcriptional regulator | - |
| ND011_RS17635 (ND011_17625) | 25786..26499 | - | 714 | WP_071666726.1 | DUF2786 domain-containing protein | - |
| ND011_RS17640 (ND011_17630) | 26583..26774 | - | 192 | WP_025377236.1 | hypothetical protein | - |
| ND011_RS17645 (ND011_17635) | 26776..27414 | - | 639 | WP_071666725.1 | DUF3164 family protein | - |
| ND011_RS17650 (ND011_17640) | 27404..27604 | - | 201 | WP_049610289.1 | hypothetical protein | - |
| ND011_RS17655 (ND011_17645) | 27611..27844 | - | 234 | WP_005276801.1 | hypothetical protein | - |
| ND011_RS17660 (ND011_17650) | 27855..28745 | - | 891 | WP_005276797.1 | ATPase | - |
| ND011_RS17665 (ND011_17655) | 28788..30839 | - | 2052 | WP_071666724.1 | Mu transposase C-terminal domain-containing protein | - |
| ND011_RS17670 (ND011_17660) | 30836..31057 | - | 222 | WP_025377231.1 | helix-turn-helix domain-containing protein | - |
| ND011_RS17675 (ND011_17665) | 31302..31826 | + | 525 | WP_025377230.1 | DNA-binding protein | - |
| ND011_RS17680 (ND011_17670) | 32050..32397 | + | 348 | WP_248574997.1 | hypothetical protein | - |
| ND011_RS17685 (ND011_17675) | 32923..33378 | + | 456 | WP_004720812.1 | hypothetical protein | VF |
| ND011_RS17690 (ND011_17680) | 33375..34163 | + | 789 | WP_038251876.1 | hypothetical protein | VF |
| ND011_RS17695 (ND011_17685) | 34163..35317 | + | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| ND011_RS17700 (ND011_17690) | 35314..35574 | + | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| ND011_RS17705 (ND011_17695) | 35590..38943 | + | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| ND011_RS17710 (ND011_17700) | 38948..39406 | + | 459 | WP_238692899.1 | hypothetical protein | - |
| ND011_RS17715 (ND011_17705) | 39423..40145 | + | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| ND011_RS17720 (ND011_17710) | 40164..41159 | + | 996 | WP_162486788.1 | hypothetical protein | VF |
| ND011_RS17725 (ND011_17715) | 41162..42415 | + | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| ND011_RS17730 (ND011_17720) | 42427..43182 | + | 756 | WP_049688151.1 | hypothetical protein | - |
| ND011_RS17735 (ND011_17725) | 43182..43709 | + | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| ND011_RS17740 (ND011_17730) | 43734..44117 | + | 384 | WP_004720828.1 | hypothetical protein | - |
| ND011_RS17745 (ND011_17735) | 44199..45134 | + | 936 | WP_267257527.1 | hypothetical protein | - |
| ND011_RS17750 (ND011_17740) | 45157..48234 | + | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| ND011_RS17755 (ND011_17745) | 48248..49441 | + | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| ND011_RS17760 (ND011_17750) | 49441..50046 | + | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| ND011_RS17765 (ND011_17755) | 50113..52254 | + | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| ND011_RS17770 (ND011_17760) | 52360..52578 | + | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| ND011_RS17775 (ND011_17765) | 52600..53280 | + | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ND011_RS17780 (ND011_17770) | 53376..54659 | + | 1284 | WP_004720838.1 | hypothetical protein | - |
| ND011_RS17785 (ND011_17775) | 54664..55728 | + | 1065 | WP_126940169.1 | DsbC family protein | - |
| ND011_RS17790 (ND011_17780) | 55739..58039 | + | 2301 | WP_126940170.1 | hypothetical protein | VF |
| ND011_RS17795 (ND011_17785) | 58126..58662 | + | 537 | WP_126940171.1 | Phospholipase D | VF |
| ND011_RS17800 (ND011_17790) | 58763..61465 | - | 2703 | WP_126940172.1 | DNA repair protein | - |
| ND011_RS17805 (ND011_17795) | 61845..62894 | - | 1050 | WP_126940173.1 | Abi family protein | - |
| ND011_RS17810 (ND011_17800) | 63191..65116 | - | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| ND011_RS17815 (ND011_17805) | 65118..65462 | - | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| ND011_RS17820 (ND011_17810) | 65731..66054 | + | 324 | WP_004720850.1 | hypothetical protein | - |
| ND011_RS17825 (ND011_17815) | 66201..66371 | - | 171 | WP_004720852.1 | DUF5983 family protein | - |
| ND011_RS17830 (ND011_17820) | 66593..67406 | - | 814 | Protein_76 | DUF932 domain-containing protein | - |
| ND011_RS17835 (ND011_17825) | 67894..68190 | - | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| ND011_RS17840 (ND011_17830) | 68236..68559 | - | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND011_RS17845 (ND011_17835) | 68711..68944 | + | 234 | WP_038251853.1 | hypothetical protein | - |
| ND011_RS17850 (ND011_17840) | 68952..69449 | - | 498 | WP_126940174.1 | hypothetical protein | - |
| ND011_RS17855 (ND011_17845) | 69446..69805 | - | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| ND011_RS17860 (ND011_17850) | 70564..71376 | - | 813 | WP_238692894.1 | N-6 DNA methylase | - |
| ND011_RS17865 (ND011_17855) | 71420..71566 | - | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| ND011_RS17870 (ND011_17860) | 71652..72008 | - | 357 | WP_126940178.1 | hypothetical protein | - |
| ND011_RS17875 (ND011_17865) | 72762..72962 | - | 201 | WP_126940179.1 | hypothetical protein | - |
| ND011_RS17880 (ND011_17870) | 73005..73511 | - | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| ND011_RS17885 (ND011_17875) | 73903..74682 | - | 780 | WP_126940182.1 | hypothetical protein | - |
| ND011_RS17890 (ND011_17880) | 74964..75434 | - | 471 | WP_126940183.1 | hypothetical protein | - |
| ND011_RS17895 (ND011_17885) | 75773..76174 | - | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| ND011_RS17900 (ND011_17890) | 76176..77150 | - | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| ND011_RS17905 (ND011_17895) | 77454..78107 | + | 654 | WP_126940185.1 | AAA family ATPase | - |
| ND011_RS17910 (ND011_17900) | 78141..78422 | + | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| ND011_RS17915 (ND011_17905) | 78623..79579 | - | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND011_RS17920 (ND011_17910) | 80103..81026 | + | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| ND011_RS17925 (ND011_17915) | 81115..81282 | - | 168 | Protein_95 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| ND011_RS17930 (ND011_17920) | 81343..82038 | + | 696 | WP_126940192.1 | IS6 family transposase ISEas1 | Transposase |
| ND011_RS17935 (ND011_17925) | 82132..82779 | - | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND011_RS17940 (ND011_17930) | 83023..83250 | + | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ND011_RS17945 (ND011_17935) | 83298..83993 | + | 696 | WP_126940192.1 | IS6 family transposase ISEas1 | Transposase |
| ND011_RS17950 (ND011_17940) | 84067..84645 | - | 579 | WP_126940193.1 | hypothetical protein | - |
| ND011_RS17955 (ND011_17945) | 84870..85106 | + | 237 | Protein_101 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND011_RS17960 (ND011_17950) | 85134..85970 | - | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| ND011_RS17965 (ND011_17955) | 86040..86438 | - | 399 | WP_126940196.1 | VOC family protein | - |
| ND011_RS17970 (ND011_17960) | 86482..87591 | - | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| ND011_RS17975 (ND011_17965) | 87626..87901 | - | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| ND011_RS17980 (ND011_17970) | 88130..89281 | - | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| ND011_RS17985 (ND011_17975) | 89399..89556 | - | 158 | Protein_107 | IS5/IS1182 family transposase | - |
| ND011_RS17990 (ND011_17980) | 89562..89643 | - | 82 | Protein_108 | regulator protein FrmR | - |
| ND011_RS17995 (ND011_17985) | 90079..91476 | - | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| ND011_RS18000 (ND011_17990) | 91513..92085 | - | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| ND011_RS18005 (ND011_17995) | 92217..92807 | - | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| ND011_RS18010 (ND011_18000) | 93276..94478 | + | 1203 | WP_126940155.1 | hypothetical protein | - |
| ND011_RS18015 (ND011_18005) | 94767..95132 | + | 366 | Protein_113 | Tn3 family transposase | - |
| ND011_RS18020 (ND011_18010) | 96163..97113 | - | 951 | WP_126940197.1 | Replication protein | - |
| ND011_RS18025 (ND011_18015) | 98010..98720 | + | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| ND011_RS18030 (ND011_18020) | 98777..98938 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| ND011_RS18035 (ND011_18025) | 99235..99606 | - | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| ND011_RS18040 (ND011_18030) | 99901..100410 | + | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| ND011_RS18045 (ND011_18035) | 100638..101339 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| ND011_RS18050 (ND011_18040) | 101402..101602 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| ND011_RS18055 (ND011_18045) | 101680..102723 | + | 1044 | WP_162486785.1 | toxin co-regulated pilus biosynthesis Q family protein | - |
| ND011_RS18060 (ND011_18050) | 102723..103148 | + | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| ND011_RS18065 (ND011_18055) | 103169..104791 | + | 1623 | WP_248575002.1 | hypothetical protein | VF |
| ND011_RS18070 (ND011_18060) | 104971..105519 | + | 549 | WP_162486786.1 | hypothetical protein | - |
| ND011_RS18075 (ND011_18065) | 105523..106836 | + | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| ND011_RS18080 (ND011_18070) | 106823..107410 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| ND011_RS18085 (ND011_18075) | 107414..108907 | + | 1494 | WP_069971730.1 | hypothetical protein | VF |
| ND011_RS18090 (ND011_18080) | 108904..110046 | + | 1143 | WP_238692898.1 | hypothetical protein | VF |
| ND011_RS18095 (ND011_18085) | 110084..110677 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| ND011_RS18100 (ND011_18090) | 110739..111224 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| ND011_RS18105 (ND011_18095) | 111224..111874 | + | 651 | WP_038251878.1 | hypothetical protein | VF |
| ND011_RS18110 (ND011_18100) | 111871..112944 | + | 1074 | WP_248575003.1 | hypothetical protein | VF |
| ND011_RS18115 (ND011_18105) | 113014..113622 | - | 609 | WP_071666813.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| ND011_RS18120 (ND011_18110) | 114051..114548 | + | 498 | WP_004722849.1 | hypothetical protein | - |
| ND011_RS18125 (ND011_18115) | 114586..115008 | - | 423 | WP_040155147.1 | tail assembly chaperone | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|