MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 80847 bp
Accession: NZ_CP098715 Location: 1..80847 Organism: Yersinia ruckeri strain NVI-1176 Replicon: plasmid pYR4
Accession: NZ_CP098715 Location: 1..80847 Organism: Yersinia ruckeri strain NVI-1176 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND442_RS17545 (ND442_17545) | 20..598 | - | 579 | WP_126940193.1 | hypothetical protein | - |
| ND442_RS17550 (ND442_17550) | 823..1059 | + | 237 | Protein_1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND442_RS17555 (ND442_17555) | 1087..1923 | - | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| ND442_RS17560 (ND442_17560) | 1993..2391 | - | 399 | WP_126940196.1 | VOC family protein | - |
| ND442_RS17565 (ND442_17565) | 2435..3544 | - | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| ND442_RS17570 (ND442_17570) | 3579..3854 | - | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| ND442_RS17575 (ND442_17575) | 4083..5234 | - | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| ND442_RS17580 (ND442_17580) | 5352..5509 | - | 158 | Protein_7 | IS5 family transposase ISSba21 | Transposase |
| ND442_RS17585 (ND442_17585) | 5515..5596 | - | 82 | Protein_8 | regulator protein FrmR | - |
| ND442_RS17590 (ND442_17590) | 6032..7429 | - | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| ND442_RS17595 (ND442_17595) | 7466..8062 | - | 597 | WP_267263416.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| ND442_RS17600 (ND442_17600) | 8170..8760 | - | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| ND442_RS17605 (ND442_17605) | 9229..10431 | + | 1203 | WP_126940155.1 | hypothetical protein | - |
| ND442_RS17610 (ND442_17610) | 10720..11085 | + | 366 | Protein_13 | Tn3 family transposase | - |
| ND442_RS17615 (ND442_17615) | 12116..13066 | - | 951 | WP_126940197.1 | Replication protein | - |
| ND442_RS17620 (ND442_17620) | 13963..14673 | + | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| ND442_RS17625 (ND442_17625) | 14730..14891 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| ND442_RS17630 (ND442_17630) | 15188..15559 | - | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| ND442_RS17635 (ND442_17635) | 15854..16363 | + | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| ND442_RS17640 (ND442_17640) | 16591..17292 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| ND442_RS17645 (ND442_17645) | 17355..17555 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| ND442_RS17650 (ND442_17650) | 17633..18676 | + | 1044 | WP_162486785.1 | hypothetical protein | VF |
| ND442_RS17655 (ND442_17655) | 18676..19101 | + | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| ND442_RS17660 (ND442_17660) | 19122..20744 | + | 1623 | WP_248575002.1 | hypothetical protein | VF |
| ND442_RS17665 (ND442_17665) | 20924..21472 | + | 549 | WP_162486786.1 | hypothetical protein | - |
| ND442_RS17670 (ND442_17670) | 21476..22789 | + | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| ND442_RS17675 (ND442_17675) | 22776..23363 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| ND442_RS17680 (ND442_17680) | 23367..24860 | + | 1494 | WP_069971730.1 | hypothetical protein | VF |
| ND442_RS17685 (ND442_17685) | 24857..25999 | + | 1143 | WP_238692898.1 | hypothetical protein | VF |
| ND442_RS17690 (ND442_17690) | 26037..26630 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| ND442_RS17695 (ND442_17695) | 26692..27177 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| ND442_RS17700 (ND442_17700) | 27177..27827 | + | 651 | WP_038251878.1 | hypothetical protein | VF |
| ND442_RS17705 (ND442_17705) | 27824..29197 | + | 1374 | WP_099511713.1 | hypothetical protein | VF |
| ND442_RS17710 (ND442_17710) | 29723..30178 | + | 456 | WP_004720812.1 | hypothetical protein | VF |
| ND442_RS17715 (ND442_17715) | 30175..30963 | + | 789 | WP_038251876.1 | hypothetical protein | VF |
| ND442_RS17720 (ND442_17720) | 30963..32117 | + | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| ND442_RS17725 (ND442_17725) | 32114..32374 | + | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| ND442_RS17730 (ND442_17730) | 32390..35743 | + | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| ND442_RS17735 (ND442_17735) | 35748..36206 | + | 459 | WP_238692899.1 | hypothetical protein | - |
| ND442_RS17740 (ND442_17740) | 36223..36945 | + | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| ND442_RS17745 (ND442_17745) | 36964..37959 | + | 996 | WP_162486788.1 | hypothetical protein | VF |
| ND442_RS17750 (ND442_17750) | 37962..39215 | + | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| ND442_RS17755 (ND442_17755) | 39275..39982 | + | 708 | WP_126940165.1 | hypothetical protein | - |
| ND442_RS17760 (ND442_17760) | 39982..40509 | + | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| ND442_RS17765 (ND442_17765) | 40534..40917 | + | 384 | WP_004720828.1 | hypothetical protein | - |
| ND442_RS17770 (ND442_17770) | 40978..41934 | + | 957 | WP_267263415.1 | hypothetical protein | - |
| ND442_RS17775 (ND442_17775) | 41957..45034 | + | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| ND442_RS17780 (ND442_17780) | 45048..46241 | + | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| ND442_RS17785 (ND442_17785) | 46241..46846 | + | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| ND442_RS17790 (ND442_17790) | 46913..49054 | + | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| ND442_RS17795 (ND442_17795) | 49160..49378 | + | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| ND442_RS17800 (ND442_17800) | 49400..50080 | + | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ND442_RS17805 (ND442_17805) | 50176..51459 | + | 1284 | WP_004720838.1 | hypothetical protein | - |
| ND442_RS17810 (ND442_17810) | 51464..52528 | + | 1065 | WP_126940169.1 | DsbC family protein | - |
| ND442_RS17815 (ND442_17815) | 52539..54839 | + | 2301 | WP_126940170.1 | hypothetical protein | VF |
| ND442_RS17820 (ND442_17820) | 54926..55462 | + | 537 | WP_126940171.1 | Phospholipase D | VF |
| ND442_RS17825 (ND442_17825) | 55563..58265 | - | 2703 | WP_126940172.1 | DNA repair protein | - |
| ND442_RS17830 (ND442_17830) | 58645..59694 | - | 1050 | WP_126940173.1 | Abi family protein | - |
| ND442_RS17835 (ND442_17835) | 59991..61916 | - | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| ND442_RS17840 (ND442_17840) | 61918..62262 | - | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| ND442_RS17845 (ND442_17845) | 62531..62854 | + | 324 | WP_004720850.1 | hypothetical protein | - |
| ND442_RS17850 (ND442_17850) | 63393..64206 | - | 814 | Protein_61 | DUF932 domain-containing protein | - |
| ND442_RS17855 (ND442_17855) | 64694..64990 | - | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| ND442_RS17860 (ND442_17860) | 65036..65359 | - | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND442_RS17865 (ND442_17865) | 65511..65744 | + | 234 | WP_038251853.1 | hypothetical protein | - |
| ND442_RS17870 (ND442_17870) | 65752..66249 | - | 498 | WP_126940174.1 | hypothetical protein | - |
| ND442_RS17875 (ND442_17875) | 66246..66605 | - | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| ND442_RS17880 (ND442_17880) | 67364..68176 | - | 813 | WP_238692894.1 | N-6 DNA methylase | - |
| ND442_RS17885 (ND442_17885) | 68220..68366 | - | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| ND442_RS17890 (ND442_17890) | 68452..68808 | - | 357 | WP_126940178.1 | hypothetical protein | - |
| ND442_RS17895 (ND442_17895) | 69562..69762 | - | 201 | WP_126940179.1 | hypothetical protein | - |
| ND442_RS17900 (ND442_17900) | 69805..70311 | - | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| ND442_RS17905 (ND442_17905) | 70703..71482 | - | 780 | WP_126940182.1 | hypothetical protein | - |
| ND442_RS17910 (ND442_17910) | 71764..72234 | - | 471 | WP_126940183.1 | hypothetical protein | - |
| ND442_RS17915 (ND442_17915) | 72573..72974 | - | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| ND442_RS17920 (ND442_17920) | 72976..73950 | - | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| ND442_RS17925 (ND442_17925) | 74254..74907 | + | 654 | WP_126940185.1 | AAA family ATPase | - |
| ND442_RS17930 (ND442_17930) | 74941..75222 | + | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| ND442_RS17935 (ND442_17935) | 75423..76379 | - | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND442_RS17940 (ND442_17940) | 76903..77826 | + | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| ND442_RS17945 (ND442_17945) | 77915..78082 | - | 168 | Protein_80 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| ND442_RS17950 (ND442_17950) | 78143..78838 | + | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
| ND442_RS17955 (ND442_17955) | 78932..79579 | - | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND442_RS17960 (ND442_17960) | 79823..80050 | + | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ND442_RS17965 (ND442_17965) | 80098..80793 | + | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|