MGE detailed information
MGE type: Prophage MGE length: 18258 bp
Accession: NZ_CP098714 Location: 446198..464455 Organism: Yersinia ruckeri strain NVI-1176 Replicon: chromosome
Accession: NZ_CP098714 Location: 446198..464455 Organism: Yersinia ruckeri strain NVI-1176 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND442_RS02025 (ND442_02025) | 441284..441733 | - | 450 | WP_004720451.1 | DNA polymerase III subunit chi | - |
| ND442_RS02030 (ND442_02030) | 441856..443367 | - | 1512 | WP_004720452.1 | leucyl aminopeptidase | - |
| ND442_RS02035 (ND442_02035) | 443647..444741 | + | 1095 | WP_004720454.1 | LPS export ABC transporter permease LptF | - |
| ND442_RS02040 (ND442_02040) | 444741..445811 | + | 1071 | WP_038241732.1 | LPS export ABC transporter permease LptG | - |
| ND442_RS02050 (ND442_02050) | 446198..447121 | + | 924 | Protein_395 | Prophage integrase IntA ; Integrase | Integrase |
| ND442_RS02060 (ND442_02060) | 448537..449229 | - | 693 | WP_096823268.1 | hypothetical protein | - |
| ND442_RS02065 (ND442_02065) | 449740..451704 | + | 1965 | WP_238692870.1 | hypothetical protein | - |
| ND442_RS02070 (ND442_02070) | 452869..453813 | - | 945 | WP_038275265.1 | hypothetical protein | - |
| ND442_RS02075 (ND442_02075) | 454328..455587 | + | 1260 | Protein_400 | integrase arm-type DNA-binding domain-containing protein | - |
| ND442_RS02080 (ND442_02080) | 455761..456015 | + | 255 | WP_005175264.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| ND442_RS02085 (ND442_02085) | 456005..456295 | + | 291 | WP_071666901.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND442_RS02090 (ND442_02090) | 456559..456948 | + | 390 | WP_096823270.1 | restriction endonuclease subunit S | - |
| ND442_RS02095 (ND442_02095) | 457072..457647 | + | 576 | WP_071706520.1 | DarT ssDNA thymidine ADP-ribosyltransferase family protein | - |
| ND442_RS02100 (ND442_02100) | 457650..458306 | + | 657 | WP_096823271.1 | DUF4433 domain-containing protein | Toxin Detail |
| ND442_RS02105 (ND442_02105) | 458303..459370 | + | 1068 | WP_096823272.1 | macro domain-containing protein | Antitoxin Detail |
| ND442_RS02110 (ND442_02110) | 459391..459657 | + | 267 | Protein_407 | hypothetical protein | - |
| ND442_RS02115 (ND442_02115) | 459732..459866 | + | 135 | Protein_408 | IS3 family transposase ISKpn37 | Transposase |
| ND442_RS02120 (ND442_02120) | 459869..460366 | + | 498 | Protein_409 | IS30 family transposase ISYkr1 | Transposase |
| ND442_RS02125 (ND442_02125) | 460372..461065 | + | 694 | Protein_410 | IS3 family transposase | - |
| ND442_RS02130 (ND442_02130) | 461375..462286 | - | 912 | WP_096823274.1 | EamA family transporter | - |
| ND442_RS02135 (ND442_02135) | 462443..463120 | + | 678 | WP_096823275.1 | hypothetical protein | - |
| ND442_RS02140 (ND442_02140) | 463288..464455 | - | 1168 | Protein_413 | IS3 family transposase ISKpn37 | Transposase |
| ND442_RS02145 (ND442_02145) | 464538..464684 | - | 147 | Protein_414 | helix-turn-helix domain-containing protein | - |
| ND442_RS02150 (ND442_02150) | 464791..464881 | + | 91 | Protein_415 | restriction endonuclease subunit M | - |
| ND442_RS02155 (ND442_02155) | 464956..465351 | + | 396 | WP_038245317.1 | DUF6088 family protein | - |
| ND442_RS02160 (ND442_02160) | 465344..466293 | + | 950 | Protein_417 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| ND442_RS02165 (ND442_02165) | 466663..466788 | + | 126 | Protein_418 | antirestriction protein | - |
| ND442_RS02170 (ND442_02170) | 466814..466987 | + | 174 | Protein_419 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| ND442_RS02175 (ND442_02175) | 467589..468743 | + | 1155 | WP_038245380.1 | N-acetylneuraminate epimerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|