MGE detailed information
MGE type: Prophage MGE length: 76404 bp
Accession: NZ_CP098714 Location: 2037374..2113777 Organism: Yersinia ruckeri strain NVI-1176 Replicon: chromosome
Accession: NZ_CP098714 Location: 2037374..2113777 Organism: Yersinia ruckeri strain NVI-1176 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND442_RS09250 (ND442_09245) | 2032613..2033860 | + | 1248 | WP_071704468.1 | membrane integrity lipid transport subunit YebS | - |
| ND442_RS09255 (ND442_09250) | 2033829..2036459 | + | 2631 | WP_038276011.1 | PqiB family protein | - |
| ND442_RS09260 (ND442_09255) | 2037374..2039083 | + | 1710 | WP_004721693.1 | diguanylate cyclase | - |
| ND442_RS09265 (ND442_09260) | 2039194..2039436 | + | 243 | WP_004721695.1 | DUF1480 family protein | - |
| ND442_RS09270 (ND442_09265) | 2039556..2039954 | - | 399 | WP_004721697.1 | ASCH domain-containing protein | - |
| ND442_RS09275 (ND442_09270) | 2040098..2040217 | + | 120 | WP_230675747.1 | small membrane protein YniD | - |
| ND442_RS09280 (ND442_09275) | 2040214..2040384 | - | 171 | WP_004721699.1 | YnfU family zinc-binding protein | - |
| ND442_RS09285 (ND442_09280) | 2040624..2040857 | - | 234 | WP_004721700.1 | hypothetical protein | - |
| ND442_RS09290 (ND442_09285) | 2041384..2042043 | - | 660 | WP_038242727.1 | DUF799 domain-containing protein | - |
| ND442_RS09295 (ND442_09290) | 2042040..2042396 | - | 357 | WP_038242728.1 | DUF4810 domain-containing protein | - |
| ND442_RS09300 (ND442_09295) | 2042415..2043086 | - | 672 | WP_038251427.1 | CsgG/HfaB family protein | - |
| ND442_RS09305 (ND442_09300) | 2043899..2044078 | + | 180 | WP_038242732.1 | GhoT/OrtT family toxin | - |
| ND442_RS09310 (ND442_09305) | 2044618..2045001 | - | 384 | WP_238692839.1 | hypothetical protein | - |
| ND442_RS09315 (ND442_09310) | 2046209..2046838 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| ND442_RS09320 (ND442_09315) | 2047045..2047731 | + | 687 | WP_004721715.1 | hypothetical protein | - |
| ND442_RS09325 (ND442_09320) | 2048472..2049617 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND442_RS09330 (ND442_09325) | 2049697..2050341 | + | 645 | WP_248583726.1 | hypothetical protein ; Integrase | Integrase |
| ND442_RS09335 (ND442_09330) | 2050640..2050807 | + | 168 | WP_193553623.1 | hypothetical protein | - |
| ND442_RS09340 (ND442_09335) | 2051112..2053403 | - | 2292 | WP_096823432.1 | AAA family ATPase | - |
| ND442_RS09345 (ND442_09340) | 2053887..2055614 | - | 1728 | WP_096823433.1 | ISNCY family transposase ISPa4 | Transposase |
| ND442_RS09350 (ND442_09345) | 2055859..2064207 | - | 8349 | WP_096823434.1 | LPD5 domain-containing protein | - |
| ND442_RS09355 (ND442_09350) | 2064473..2064634 | - | 162 | WP_157836120.1 | hypothetical protein | - |
| ND442_RS09360 (ND442_09355) | 2064709..2066097 | - | 1389 | WP_096823435.1 | hypothetical protein | - |
| ND442_RS09365 (ND442_09360) | 2066110..2066370 | - | 261 | WP_096823436.1 | bacteriocin | - |
| ND442_RS09370 (ND442_09365) | 2066370..2066753 | - | 384 | WP_096823437.1 | hypothetical protein | - |
| ND442_RS09375 (ND442_09370) | 2066756..2067415 | - | 660 | WP_096823438.1 | hypothetical protein | - |
| ND442_RS09380 (ND442_09375) | 2067671..2068045 | - | 375 | WP_096823439.1 | hypothetical protein | - |
| ND442_RS09385 (ND442_09380) | 2068020..2069048 | - | 1029 | WP_096823440.1 | hypothetical protein | - |
| ND442_RS09390 (ND442_09385) | 2069115..2070329 | - | 1215 | WP_038246004.1 | DUF1983 domain-containing protein | - |
| ND442_RS09395 (ND442_09390) | 2070326..2071954 | - | 1629 | WP_267263398.1 | hypothetical protein | - |
| ND442_RS09400 (ND442_09395) | 2072280..2072711 | + | 432 | Protein_1827 | Hcp family type VI secretion system effector | - |
| ND442_RS09405 (ND442_09400) | 2072833..2072979 | - | 147 | WP_157836125.1 | hypothetical protein | - |
| ND442_RS09410 (ND442_09405) | 2073364..2075733 | - | 2370 | WP_096823442.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ND442_RS09415 (ND442_09410) | 2075730..2076383 | - | 654 | WP_096823443.1 | hypothetical protein | - |
| ND442_RS09420 (ND442_09415) | 2076383..2076970 | - | 588 | WP_096823444.1 | hypothetical protein | - |
| ND442_RS09425 (ND442_09420) | 2076973..2077413 | - | 441 | WP_038245291.1 | hypothetical protein | - |
| ND442_RS09430 (ND442_09425) | 2077468..2077851 | - | 384 | WP_096823445.1 | hypothetical protein | - |
| ND442_RS09435 (ND442_09430) | 2077914..2079137 | - | 1224 | WP_038245287.1 | N4-gp56 family major capsid protein | - |
| ND442_RS09440 (ND442_09435) | 2079198..2080250 | - | 1053 | WP_096823446.1 | hypothetical protein | - |
| ND442_RS09445 (ND442_09440) | 2080521..2082647 | - | 2127 | WP_096823447.1 | portal protein | - |
| ND442_RS09450 (ND442_09445) | 2082647..2084311 | - | 1665 | WP_096823679.1 | terminase | - |
| ND442_RS09455 (ND442_09450) | 2084350..2085207 | - | 858 | WP_096823448.1 | terminase | - |
| ND442_RS09460 (ND442_09455) | 2085273..2085617 | - | 345 | WP_051847063.1 | Gp49 family protein | - |
| ND442_RS09465 (ND442_09460) | 2085614..2086156 | - | 543 | WP_096823449.1 | DUF2570 domain-containing protein | - |
| ND442_RS09470 (ND442_09465) | 2086288..2086770 | - | 483 | WP_162486782.1 | lysozyme | - |
| ND442_RS09475 (ND442_09470) | 2086776..2086988 | - | 213 | WP_038245276.1 | class II holin family protein | - |
| ND442_RS09480 (ND442_09475) | 2087161..2087970 | - | 810 | WP_096823451.1 | hypothetical protein | - |
| ND442_RS09485 (ND442_09480) | 2088061..2088444 | - | 384 | WP_096823452.1 | hypothetical protein | - |
| ND442_RS09490 (ND442_09485) | 2088469..2088939 | - | 471 | WP_096823453.1 | VRR-NUC domain-containing protein | - |
| ND442_RS09495 (ND442_09490) | 2088932..2089264 | - | 333 | WP_096823454.1 | DUF1364 domain-containing protein | - |
| ND442_RS09500 (ND442_09495) | 2089266..2089913 | - | 648 | WP_096823455.1 | DUF1367 family protein | - |
| ND442_RS09505 (ND442_09500) | 2089910..2091922 | - | 2013 | WP_096823456.1 | MT-A70 family methyltransferase | - |
| ND442_RS09510 (ND442_09505) | 2091919..2092845 | - | 927 | WP_096823457.1 | site-specific DNA-methyltransferase | - |
| ND442_RS09515 (ND442_09510) | 2092842..2093189 | - | 348 | WP_096823458.1 | hypothetical protein | - |
| ND442_RS09520 (ND442_09515) | 2093189..2093359 | - | 171 | WP_238692875.1 | DNA translocase FtsK | - |
| ND442_RS09525 (ND442_09520) | 2093426..2094325 | - | 900 | Protein_1852 | recombination-associated protein RdgC | - |
| ND442_RS09530 (ND442_09525) | 2094329..2095102 | - | 774 | WP_096823460.1 | hypothetical protein | - |
| ND442_RS09535 (ND442_09530) | 2095105..2095950 | - | 846 | WP_096823461.1 | hypothetical protein | - |
| ND442_RS09540 (ND442_09535) | 2095959..2096138 | - | 180 | WP_096823462.1 | hypothetical protein | - |
| ND442_RS09545 (ND442_09540) | 2096135..2096497 | - | 363 | WP_096823463.1 | hypothetical protein | - |
| ND442_RS09550 (ND442_09545) | 2096583..2096888 | + | 306 | WP_038243388.1 | hypothetical protein | - |
| ND442_RS09555 (ND442_09550) | 2096970..2097236 | - | 267 | WP_096823464.1 | hypothetical protein | - |
| ND442_RS09560 (ND442_09555) | 2097346..2098017 | + | 672 | WP_096823465.1 | S24 family peptidase | - |
| ND442_RS09565 (ND442_09560) | 2098033..2098383 | + | 351 | WP_096823466.1 | hypothetical protein | - |
| ND442_RS09570 (ND442_09565) | 2098657..2098902 | + | 246 | WP_126940131.1 | hypothetical protein | - |
| ND442_RS09575 (ND442_09570) | 2098985..2099254 | + | 270 | WP_096823468.1 | KTSC domain-containing protein | - |
| ND442_RS09580 (ND442_09575) | 2099294..2099764 | + | 471 | WP_096823469.1 | zinc-finger-containing protein | - |
| ND442_RS09585 (ND442_09580) | 2099780..2100106 | + | 327 | WP_126940132.1 | hypothetical protein | - |
| ND442_RS09590 (ND442_09585) | 2100407..2101252 | + | 846 | WP_238692848.1 | phage recombination protein Bet | - |
| ND442_RS09595 (ND442_09590) | 2101239..2102843 | + | 1605 | WP_096823471.1 | YqaJ viral recombinase family protein | - |
| ND442_RS09600 (ND442_09595) | 2102888..2104027 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND442_RS09605 (ND442_09600) | 2104024..2104452 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| ND442_RS09610 (ND442_09605) | 2104517..2105353 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| ND442_RS09615 (ND442_09610) | 2105497..2105670 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| ND442_RS09620 (ND442_09615) | 2105861..2106115 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| ND442_RS09625 (ND442_09620) | 2106232..2106501 | + | 270 | WP_096823474.1 | excisionase | - |
| ND442_RS09630 (ND442_09625) | 2106476..2107585 | + | 1110 | WP_162486764.1 | hypothetical protein ; Integrase | Integrase |
| - | 2107658..2107804 | + | 147 | - | - | Antitoxin Detail |
| - | 2107662..2107755 | - | 94 | - | - | Toxin Detail |
| ND442_RS09635 (ND442_09630) | 2107914..2108255 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND442_RS09640 (ND442_09635) | 2108350..2109234 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND442_RS09645 (ND442_09640) | 2109236..2109622 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND442_RS09650 (ND442_09645) | 2110027..2110542 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND442_RS09655 (ND442_09650) | 2110945..2111175 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND442_RS09660 (ND442_09655) | 2111298..2112248 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
| ND442_RS09665 (ND442_09660) | 2113115..2113777 | + | 663 | WP_038276020.1 | exodeoxyribonuclease X | - |
| ND442_RS09670 (ND442_09665) | 2113783..2115813 | - | 2031 | WP_038276022.1 | prolyl oligopeptidase family serine peptidase | - |
| ND442_RS09675 (ND442_09670) | 2116122..2116487 | - | 366 | WP_004721741.1 | protein YebF | - |
| ND442_RS09680 (ND442_09675) | 2116571..2116879 | - | 309 | WP_004721742.1 | N(4)-acetylcytidine aminohydrolase | - |
| ND442_RS09685 (ND442_09680) | 2116920..2117243 | - | 324 | WP_004721744.1 | YebG family protein | - |
| ND442_RS09690 (ND442_09685) | 2117380..2118762 | - | 1383 | WP_038243339.1 | ATP-dependent RNA helicase DbpA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|