MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 80847 bp
Accession: NZ_CP098712 Location: 1..80847 Organism: Yersinia ruckeri strain NVI-1292 Replicon: plasmid pYR4
Accession: NZ_CP098712 Location: 1..80847 Organism: Yersinia ruckeri strain NVI-1292 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND448_RS17085 (ND448_17080) | 20..598 | - | 579 | WP_126940193.1 | hypothetical protein | - |
| ND448_RS17090 (ND448_17085) | 823..1059 | + | 237 | Protein_1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND448_RS17095 (ND448_17090) | 1087..1923 | - | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| ND448_RS17100 (ND448_17095) | 1993..2391 | - | 399 | WP_126940196.1 | VOC family protein | - |
| ND448_RS17105 (ND448_17100) | 2435..3544 | - | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| ND448_RS17110 (ND448_17105) | 3579..3854 | - | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| ND448_RS17115 (ND448_17110) | 4083..5234 | - | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| ND448_RS17120 (ND448_17115) | 5352..5509 | - | 158 | Protein_7 | IS5 family transposase ISSba21 | Transposase |
| ND448_RS17125 (ND448_17120) | 5515..5596 | - | 82 | Protein_8 | regulator protein FrmR | - |
| ND448_RS17130 (ND448_17125) | 6032..7429 | - | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| ND448_RS17135 (ND448_17130) | 7466..8038 | - | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| ND448_RS17140 (ND448_17135) | 8170..8760 | - | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| ND448_RS17145 (ND448_17140) | 9229..10431 | + | 1203 | WP_126940155.1 | hypothetical protein | - |
| ND448_RS17150 (ND448_17145) | 10720..11085 | + | 366 | Protein_13 | Tn3 family transposase | - |
| ND448_RS17155 (ND448_17150) | 12116..13066 | - | 951 | WP_126940197.1 | Replication protein | - |
| ND448_RS17160 (ND448_17155) | 13963..14673 | + | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| ND448_RS17165 (ND448_17160) | 14730..14891 | - | 162 | WP_004720783.1 | hypothetical protein | - |
| ND448_RS17170 (ND448_17165) | 15188..15559 | - | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| ND448_RS17175 (ND448_17170) | 15854..16363 | + | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| ND448_RS17180 (ND448_17175) | 16591..17292 | + | 702 | WP_004720789.1 | DUF2913 family protein | - |
| ND448_RS17185 (ND448_17180) | 17355..17555 | + | 201 | WP_004720790.1 | hypothetical protein | - |
| ND448_RS17190 (ND448_17185) | 17633..18676 | + | 1044 | WP_162486785.1 | hypothetical protein | VF |
| ND448_RS17195 (ND448_17190) | 18676..19101 | + | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| ND448_RS17200 (ND448_17195) | 19122..20744 | + | 1623 | WP_248575002.1 | hypothetical protein | VF |
| ND448_RS17205 (ND448_17200) | 20924..21472 | + | 549 | WP_162486786.1 | hypothetical protein | - |
| ND448_RS17210 (ND448_17205) | 21476..22789 | + | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| ND448_RS17215 (ND448_17210) | 22776..23363 | + | 588 | WP_049688157.1 | hypothetical protein | VF |
| ND448_RS17220 (ND448_17215) | 23367..24860 | + | 1494 | WP_069971730.1 | hypothetical protein | VF |
| ND448_RS17225 (ND448_17220) | 24857..25999 | + | 1143 | WP_238692898.1 | hypothetical protein | VF |
| ND448_RS17230 (ND448_17225) | 26037..26630 | + | 594 | WP_038251880.1 | hypothetical protein | VF |
| ND448_RS17235 (ND448_17230) | 26692..27177 | + | 486 | WP_004720806.1 | hypothetical protein | VF |
| ND448_RS17240 (ND448_17235) | 27177..27827 | + | 651 | WP_038251878.1 | hypothetical protein | VF |
| ND448_RS17245 (ND448_17240) | 27824..29197 | + | 1374 | WP_099511713.1 | hypothetical protein | VF |
| ND448_RS17250 (ND448_17245) | 29723..30178 | + | 456 | WP_004720812.1 | hypothetical protein | VF |
| ND448_RS17255 (ND448_17250) | 30175..30963 | + | 789 | WP_038251876.1 | hypothetical protein | VF |
| ND448_RS17260 (ND448_17255) | 30963..32117 | + | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| ND448_RS17265 (ND448_17260) | 32114..32374 | + | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| ND448_RS17270 (ND448_17265) | 32390..35743 | + | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| ND448_RS17275 (ND448_17270) | 35748..36206 | + | 459 | WP_238692899.1 | hypothetical protein | - |
| ND448_RS17280 (ND448_17275) | 36223..36945 | + | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| ND448_RS17285 (ND448_17280) | 36964..37959 | + | 996 | WP_162486788.1 | hypothetical protein | VF |
| ND448_RS17290 (ND448_17285) | 37962..39215 | + | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| ND448_RS17295 (ND448_17290) | 39275..39982 | + | 708 | WP_126940165.1 | hypothetical protein | - |
| ND448_RS17300 (ND448_17295) | 39982..40509 | + | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| ND448_RS17305 (ND448_17300) | 40534..40917 | + | 384 | WP_004720828.1 | hypothetical protein | - |
| ND448_RS17310 (ND448_17305) | 40978..41934 | + | 957 | WP_004720829.1 | hypothetical protein | - |
| ND448_RS17315 (ND448_17310) | 41957..45034 | + | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| ND448_RS17320 (ND448_17315) | 45048..46241 | + | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| ND448_RS17325 (ND448_17320) | 46241..46846 | + | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| ND448_RS17330 (ND448_17325) | 46913..49054 | + | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| ND448_RS17335 (ND448_17330) | 49160..49378 | + | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| ND448_RS17340 (ND448_17335) | 49400..50080 | + | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ND448_RS17345 (ND448_17340) | 50176..51459 | + | 1284 | WP_004720838.1 | hypothetical protein | - |
| ND448_RS17350 (ND448_17345) | 51464..52528 | + | 1065 | WP_126940169.1 | DsbC family protein | - |
| ND448_RS17355 (ND448_17350) | 52539..54839 | + | 2301 | WP_126940170.1 | hypothetical protein | VF |
| ND448_RS17360 (ND448_17355) | 54926..55462 | + | 537 | WP_126940171.1 | Phospholipase D | VF |
| ND448_RS17365 (ND448_17360) | 55563..58265 | - | 2703 | WP_126940172.1 | DNA repair protein | - |
| ND448_RS17370 (ND448_17365) | 58645..59694 | - | 1050 | WP_126940173.1 | Abi family protein | - |
| ND448_RS17375 (ND448_17370) | 59991..61916 | - | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| ND448_RS17380 (ND448_17375) | 61918..62262 | - | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| ND448_RS17385 (ND448_17380) | 62531..62854 | + | 324 | WP_004720850.1 | hypothetical protein | - |
| ND448_RS17390 (ND448_17385) | 63393..64206 | - | 814 | Protein_61 | DUF932 domain-containing protein | - |
| ND448_RS17395 (ND448_17390) | 64694..64990 | - | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| ND448_RS17400 (ND448_17395) | 65036..65359 | - | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND448_RS17405 (ND448_17400) | 65511..65744 | + | 234 | WP_038251853.1 | hypothetical protein | - |
| ND448_RS17410 (ND448_17405) | 65752..66249 | - | 498 | WP_126940174.1 | hypothetical protein | - |
| ND448_RS17415 (ND448_17410) | 66246..66605 | - | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| ND448_RS17420 (ND448_17415) | 67364..68176 | - | 813 | WP_238692894.1 | N-6 DNA methylase | - |
| ND448_RS17425 (ND448_17420) | 68220..68366 | - | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| ND448_RS17430 (ND448_17425) | 68452..68808 | - | 357 | WP_126940178.1 | hypothetical protein | - |
| ND448_RS17435 (ND448_17430) | 69562..69762 | - | 201 | WP_126940179.1 | hypothetical protein | - |
| ND448_RS17440 (ND448_17435) | 69805..70311 | - | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| ND448_RS17445 (ND448_17440) | 70703..71482 | - | 780 | WP_126940182.1 | hypothetical protein | - |
| ND448_RS17450 (ND448_17445) | 71764..72234 | - | 471 | WP_126940183.1 | hypothetical protein | - |
| ND448_RS17455 (ND448_17450) | 72573..72974 | - | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| ND448_RS17460 (ND448_17455) | 72976..73950 | - | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| ND448_RS17465 (ND448_17460) | 74254..74907 | + | 654 | WP_126940185.1 | AAA family ATPase | - |
| ND448_RS17470 (ND448_17465) | 74941..75222 | + | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| ND448_RS17475 (ND448_17470) | 75423..76379 | - | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND448_RS17480 (ND448_17475) | 76903..77826 | + | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| ND448_RS17485 (ND448_17480) | 77915..78082 | - | 168 | Protein_80 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| ND448_RS17490 (ND448_17485) | 78143..78838 | + | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
| ND448_RS17495 (ND448_17490) | 78932..79579 | - | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND448_RS17500 (ND448_17495) | 79823..80050 | + | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ND448_RS17505 (ND448_17500) | 80098..80793 | + | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|