MGE detailed information
MGE type: Prophage MGE length: 70882 bp
Accession: NZ_CP098711 Location: 2008259..2079140 Organism: Yersinia ruckeri strain NVI-1292 Replicon: chromosome
Accession: NZ_CP098711 Location: 2008259..2079140 Organism: Yersinia ruckeri strain NVI-1292 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND448_RS09035 (ND448_09025) | 2003498..2004745 | + | 1248 | WP_071704468.1 | membrane integrity lipid transport subunit YebS | - |
| ND448_RS09040 (ND448_09030) | 2004714..2007344 | + | 2631 | WP_038276011.1 | PqiB family protein | - |
| ND448_RS09045 (ND448_09035) | 2008259..2009968 | + | 1710 | WP_004721693.1 | diguanylate cyclase | - |
| ND448_RS09050 (ND448_09040) | 2010079..2010321 | + | 243 | WP_004721695.1 | DUF1480 family protein | - |
| ND448_RS09055 (ND448_09045) | 2010441..2010839 | - | 399 | WP_004721697.1 | ASCH domain-containing protein | - |
| ND448_RS09060 (ND448_09050) | 2010983..2011102 | + | 120 | WP_230675747.1 | small membrane protein YniD | - |
| ND448_RS09065 (ND448_09055) | 2011099..2011269 | - | 171 | WP_004721699.1 | YnfU family zinc-binding protein | - |
| ND448_RS09070 (ND448_09060) | 2011509..2011742 | - | 234 | WP_004721700.1 | hypothetical protein | - |
| ND448_RS09075 (ND448_09065) | 2012269..2012928 | - | 660 | WP_038242727.1 | DUF799 domain-containing protein | - |
| ND448_RS09080 (ND448_09070) | 2012925..2013281 | - | 357 | WP_038242728.1 | DUF4810 domain-containing protein | - |
| ND448_RS09085 (ND448_09075) | 2013300..2013971 | - | 672 | WP_038251427.1 | CsgG/HfaB family protein | - |
| ND448_RS09090 (ND448_09080) | 2014784..2014963 | + | 180 | WP_038242732.1 | GhoT/OrtT family toxin | - |
| ND448_RS09095 (ND448_09085) | 2015503..2015886 | - | 384 | WP_238692839.1 | hypothetical protein | - |
| ND448_RS09100 (ND448_09090) | 2017094..2017723 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| ND448_RS09105 (ND448_09095) | 2017948..2018616 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| ND448_RS09110 (ND448_09100) | 2019357..2020502 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND448_RS09115 (ND448_09105) | 2020582..2021226 | + | 645 | WP_248583726.1 | hypothetical protein ; Integrase | Integrase |
| ND448_RS09120 (ND448_09110) | 2021525..2021692 | + | 168 | WP_193553623.1 | hypothetical protein | - |
| ND448_RS09125 (ND448_09115) | 2021997..2024288 | - | 2292 | WP_096823432.1 | AAA family ATPase | - |
| ND448_RS09130 (ND448_09120) | 2024772..2026499 | - | 1728 | WP_096823433.1 | ISNCY family transposase ISPa4 | Transposase |
| ND448_RS09135 (ND448_09125) | 2026744..2035092 | - | 8349 | WP_096823434.1 | LPD5 domain-containing protein | - |
| ND448_RS09140 (ND448_09130) | 2035358..2035519 | - | 162 | WP_157836120.1 | hypothetical protein | - |
| ND448_RS09145 (ND448_09135) | 2035594..2036982 | - | 1389 | WP_096823435.1 | hypothetical protein | - |
| ND448_RS09150 (ND448_09140) | 2036995..2037255 | - | 261 | WP_096823436.1 | bacteriocin | - |
| ND448_RS09155 (ND448_09145) | 2037255..2037638 | - | 384 | WP_096823437.1 | hypothetical protein | - |
| ND448_RS09160 (ND448_09150) | 2037641..2038300 | - | 660 | WP_096823438.1 | hypothetical protein | - |
| ND448_RS09165 (ND448_09155) | 2038556..2038930 | - | 375 | WP_096823439.1 | hypothetical protein | - |
| ND448_RS09170 (ND448_09160) | 2038905..2039933 | - | 1029 | WP_096823440.1 | hypothetical protein | - |
| ND448_RS09175 (ND448_09165) | 2040000..2041214 | - | 1215 | WP_038246004.1 | DUF1983 domain-containing protein | - |
| ND448_RS09180 (ND448_09170) | 2041211..2042839 | - | 1629 | WP_096823441.1 | hypothetical protein | - |
| ND448_RS09185 (ND448_09175) | 2043165..2043596 | + | 432 | Protein_1784 | Hcp family type VI secretion system effector | - |
| ND448_RS09190 (ND448_09180) | 2043718..2043864 | - | 147 | WP_157836125.1 | hypothetical protein | - |
| ND448_RS09195 (ND448_09185) | 2044249..2046618 | - | 2370 | WP_096823442.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ND448_RS09200 (ND448_09190) | 2046615..2047268 | - | 654 | WP_096823443.1 | hypothetical protein | - |
| ND448_RS09205 (ND448_09195) | 2047268..2047855 | - | 588 | WP_096823444.1 | hypothetical protein | - |
| ND448_RS09210 (ND448_09200) | 2047858..2048298 | - | 441 | WP_038245291.1 | hypothetical protein | - |
| ND448_RS09215 (ND448_09205) | 2048353..2048736 | - | 384 | WP_096823445.1 | hypothetical protein | - |
| ND448_RS09220 (ND448_09210) | 2048799..2050022 | - | 1224 | WP_038245287.1 | N4-gp56 family major capsid protein | - |
| ND448_RS09225 (ND448_09215) | 2050083..2051135 | - | 1053 | WP_096823446.1 | hypothetical protein | - |
| ND448_RS09230 (ND448_09220) | 2051406..2053532 | - | 2127 | WP_096823447.1 | portal protein | - |
| ND448_RS09235 (ND448_09225) | 2053532..2055196 | - | 1665 | WP_096823679.1 | terminase | - |
| ND448_RS09240 (ND448_09230) | 2055235..2056092 | - | 858 | WP_096823448.1 | terminase | - |
| ND448_RS09245 (ND448_09235) | 2056158..2056502 | - | 345 | WP_051847063.1 | Gp49 family protein | - |
| ND448_RS09250 (ND448_09240) | 2056499..2057041 | - | 543 | WP_096823449.1 | DUF2570 domain-containing protein | - |
| ND448_RS09255 (ND448_09245) | 2057173..2057655 | - | 483 | WP_162486782.1 | lysozyme | - |
| ND448_RS09260 (ND448_09250) | 2057661..2057873 | - | 213 | WP_038245276.1 | class II holin family protein | - |
| ND448_RS09265 (ND448_09255) | 2058046..2058855 | - | 810 | WP_096823451.1 | hypothetical protein | - |
| ND448_RS09270 (ND448_09260) | 2058946..2059329 | - | 384 | WP_096823452.1 | hypothetical protein | - |
| ND448_RS09275 (ND448_09265) | 2059354..2059824 | - | 471 | WP_096823453.1 | VRR-NUC domain-containing protein | - |
| ND448_RS09280 (ND448_09270) | 2059817..2060149 | - | 333 | WP_096823454.1 | DUF1364 domain-containing protein | - |
| ND448_RS09285 (ND448_09275) | 2060151..2060798 | - | 648 | WP_096823455.1 | DUF1367 family protein | - |
| ND448_RS09290 (ND448_09280) | 2060795..2062807 | - | 2013 | WP_096823456.1 | MT-A70 family methyltransferase | - |
| ND448_RS09295 (ND448_09285) | 2062804..2063730 | - | 927 | WP_096823457.1 | site-specific DNA-methyltransferase | - |
| ND448_RS09300 (ND448_09290) | 2063727..2064074 | - | 348 | WP_096823458.1 | hypothetical protein | - |
| ND448_RS09305 (ND448_09295) | 2064074..2064244 | - | 171 | WP_238692875.1 | DNA translocase FtsK | - |
| ND448_RS09310 (ND448_09300) | 2064311..2065210 | - | 900 | Protein_1809 | recombination-associated protein RdgC | - |
| ND448_RS09315 (ND448_09305) | 2065214..2065987 | - | 774 | WP_096823460.1 | hypothetical protein | - |
| ND448_RS09320 (ND448_09310) | 2065990..2066835 | - | 846 | WP_096823461.1 | hypothetical protein | - |
| ND448_RS09325 (ND448_09315) | 2066844..2067023 | - | 180 | WP_096823462.1 | hypothetical protein | - |
| ND448_RS09330 (ND448_09320) | 2067020..2067382 | - | 363 | WP_096823463.1 | hypothetical protein | - |
| ND448_RS09335 (ND448_09325) | 2067468..2067773 | + | 306 | WP_038243388.1 | hypothetical protein | - |
| ND448_RS09340 (ND448_09330) | 2067855..2068121 | - | 267 | WP_096823464.1 | hypothetical protein | - |
| ND448_RS09345 (ND448_09335) | 2068231..2068902 | + | 672 | WP_096823465.1 | S24 family peptidase | - |
| ND448_RS09350 (ND448_09340) | 2068918..2069268 | + | 351 | WP_096823466.1 | hypothetical protein | - |
| ND448_RS09355 (ND448_09345) | 2069542..2069787 | + | 246 | WP_126940131.1 | hypothetical protein | - |
| ND448_RS09360 (ND448_09350) | 2069870..2070139 | + | 270 | WP_096823468.1 | KTSC domain-containing protein | - |
| ND448_RS09365 (ND448_09355) | 2070179..2070649 | + | 471 | WP_096823469.1 | zinc-finger-containing protein | - |
| ND448_RS09370 (ND448_09360) | 2070665..2070991 | + | 327 | WP_126940132.1 | hypothetical protein | - |
| ND448_RS09375 (ND448_09365) | 2071292..2072137 | + | 846 | WP_238692848.1 | phage recombination protein Bet | - |
| ND448_RS09380 (ND448_09370) | 2072124..2073728 | + | 1605 | WP_096823471.1 | YqaJ viral recombinase family protein | - |
| ND448_RS09385 (ND448_09375) | 2073773..2074912 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND448_RS09390 (ND448_09380) | 2074909..2075337 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| ND448_RS09395 (ND448_09385) | 2075402..2076238 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| ND448_RS09400 (ND448_09390) | 2076382..2076555 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| ND448_RS09405 (ND448_09395) | 2076746..2077000 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| ND448_RS09410 (ND448_09400) | 2077117..2077386 | + | 270 | WP_096823474.1 | excisionase | - |
| ND448_RS09415 (ND448_09405) | 2077361..2078470 | + | 1110 | WP_162486764.1 | hypothetical protein ; Integrase | Integrase |
| - | 2078543..2078689 | + | 147 | - | - | Antitoxin Detail |
| - | 2078547..2078640 | - | 94 | - | - | Toxin Detail |
| ND448_RS09420 (ND448_09410) | 2078799..2079140 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND448_RS09425 (ND448_09415) | 2079235..2080119 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND448_RS09430 (ND448_09420) | 2080121..2080507 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND448_RS09435 (ND448_09425) | 2080912..2081427 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND448_RS09440 (ND448_09430) | 2081830..2082060 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND448_RS09445 (ND448_09435) | 2082183..2083133 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|