MGE detailed information
MGE type: Conjugative plasmid MGE length: 71441 bp
Accession: NZ_CP098708 Location: 1..71441 Organism: Yersinia ruckeri strain NVI-4570 Replicon: plasmid pYR6
Accession: NZ_CP098708 Location: 1..71441 Organism: Yersinia ruckeri strain NVI-4570 Replicon: plasmid pYR6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND447_RS17570 (ND447_17560) | 927..1409 | + | 483 | WP_120806783.1 | transcription termination/antitermination NusG family protein | - |
| ND447_RS17575 (ND447_17565) | 1977..2984 | + | 1008 | WP_265317530.1 | hypothetical protein | VF |
| ND447_RS17580 (ND447_17570) | 2981..3406 | + | 426 | WP_234049643.1 | type IV pilus biogenesis protein PilM | - |
| ND447_RS17585 (ND447_17575) | 3417..5057 | + | 1641 | WP_267262820.1 | hypothetical protein | VF |
| ND447_RS17590 (ND447_17580) | 5062..6327 | + | 1266 | WP_120806788.1 | type 4b pilus protein PilO2 | - |
| ND447_RS17595 (ND447_17585) | 6314..6850 | + | 537 | WP_234049644.1 | type IV pilus biogenesis protein PilP | - |
| ND447_RS17600 (ND447_17590) | 6852..8354 | + | 1503 | WP_205582781.1 | hypothetical protein | VF |
| ND447_RS17605 (ND447_17595) | 8415..9542 | + | 1128 | WP_234049646.1 | hypothetical protein | VF |
| ND447_RS17610 (ND447_17600) | 9564..10172 | + | 609 | WP_120806739.1 | hypothetical protein | VF |
| ND447_RS17615 (ND447_17605) | 10182..10652 | + | 471 | WP_234049647.1 | hypothetical protein | VF |
| ND447_RS17620 (ND447_17610) | 10649..11317 | + | 669 | WP_120806741.1 | prepilin peptidase | - |
| ND447_RS17625 (ND447_17615) | 11307..12686 | + | 1380 | WP_234049648.1 | hypothetical protein | VF |
| ND447_RS17630 (ND447_17620) | 12731..13186 | + | 456 | WP_120806742.1 | DotD/TraH family lipoprotein | - |
| ND447_RS17635 (ND447_17625) | 13183..13971 | + | 789 | WP_050074349.1 | hypothetical protein | VF |
| ND447_RS17640 (ND447_17630) | 13991..15166 | + | 1176 | WP_145559185.1 | hypothetical protein | VF |
| ND447_RS17645 (ND447_17635) | 15166..15432 | + | 267 | WP_050074346.1 | IcmT/TraK family protein | - |
| ND447_RS17650 (ND447_17640) | 15491..18715 | + | 3225 | WP_267262821.1 | DUF5710 domain-containing protein | - |
| ND447_RS17655 (ND447_17645) | 18725..19210 | + | 486 | WP_234049650.1 | hypothetical protein | - |
| ND447_RS17660 (ND447_17650) | 19295..19969 | + | 675 | WP_050074341.1 | hypothetical protein | VF |
| ND447_RS17665 (ND447_17655) | 19972..20982 | + | 1011 | WP_267262822.1 | hypothetical protein | VF |
| ND447_RS17670 (ND447_17660) | 20987..22198 | + | 1212 | WP_265317532.1 | conjugal transfer protein TraO | - |
| ND447_RS17675 (ND447_17665) | 22198..22935 | + | 738 | WP_234049652.1 | hypothetical protein | - |
| ND447_RS17680 (ND447_17670) | 22944..23474 | + | 531 | WP_050074337.1 | conjugal transfer protein TraQ | - |
| ND447_RS17685 (ND447_17675) | 23489..23893 | + | 405 | WP_108088340.1 | hypothetical protein | - |
| ND447_RS17690 (ND447_17680) | 23984..24589 | + | 606 | WP_050074479.1 | hypothetical protein | - |
| ND447_RS17695 (ND447_17685) | 24592..27666 | + | 3075 | WP_234049653.1 | type IV secretory system conjugative DNA transfer family protein | - |
| ND447_RS17700 (ND447_17690) | 27857..29086 | + | 1230 | WP_120806751.1 | conjugal transfer protein TraW | - |
| ND447_RS17705 (ND447_17695) | 29079..29684 | + | 606 | WP_050289008.1 | conjugal transfer protein TraX | - |
| ND447_RS17710 (ND447_17700) | 29813..31933 | + | 2121 | WP_234049654.1 | DotA/TraY family protein | - |
| ND447_RS17715 (ND447_17705) | 31945..32517 | + | 573 | WP_088130798.1 | hypothetical protein | - |
| ND447_RS17720 (ND447_17710) | 32665..33981 | + | 1317 | WP_234049655.1 | conjugal transfer protein TrbA | - |
| ND447_RS17725 (ND447_17715) | 34004..35005 | + | 1002 | WP_265317513.1 | hypothetical protein | - |
| ND447_RS17730 (ND447_17720) | 35067..37244 | + | 2178 | WP_240442712.1 | F-type conjugative transfer protein TrbC | - |
| ND447_RS17735 (ND447_17725) | 37327..37632 | + | 306 | WP_267262812.1 | hypothetical protein | - |
| ND447_RS17740 (ND447_17730) | 37650..38186 | + | 537 | WP_234049659.1 | hypothetical protein | VF |
| ND447_RS17745 (ND447_17735) | 38196..38513 | + | 318 | WP_050289016.1 | hypothetical protein | - |
| ND447_RS17750 (ND447_17740) | 38574..40529 | - | 1956 | WP_234049660.1 | hypothetical protein | Relaxase |
| ND447_RS17755 (ND447_17745) | 40526..40876 | - | 351 | WP_050074462.1 | plasmid mobilization protein MobA | - |
| ND447_RS17760 (ND447_17750) | 41145..41483 | + | 339 | WP_050074460.1 | hypothetical protein | - |
| ND447_RS17765 (ND447_17755) | 41614..41925 | - | 312 | WP_050074459.1 | DUF5983 family protein | - |
| ND447_RS17770 (ND447_17760) | 41970..42791 | - | 822 | WP_050289019.1 | DUF932 domain-containing protein | - |
| ND447_RS17775 (ND447_17765) | 43275..44114 | - | 840 | WP_050074487.1 | DUF4942 domain-containing protein | - |
| ND447_RS17780 (ND447_17770) | 44555..44929 | - | 375 | WP_050074458.1 | hypothetical protein | - |
| ND447_RS17785 (ND447_17775) | 44984..45226 | - | 243 | WP_050074457.1 | hypothetical protein | - |
| ND447_RS17790 (ND447_17780) | 45313..45651 | - | 339 | WP_050074456.1 | hypothetical protein | - |
| ND447_RS17795 (ND447_17785) | 45703..45948 | - | 246 | WP_050289020.1 | hypothetical protein | - |
| ND447_RS17800 (ND447_17790) | 46850..47611 | - | 762 | WP_050074452.1 | plasmid SOS inhibition protein A | - |
| ND447_RS17805 (ND447_17795) | 47608..48054 | - | 447 | WP_050074451.1 | conjugation system SOS inhibitor PsiB | - |
| ND447_RS17810 (ND447_17800) | 48093..50108 | - | 2016 | WP_050289021.1 | ParB/RepB/Spo0J family partition protein | - |
| ND447_RS17815 (ND447_17805) | 50203..50484 | - | 282 | WP_234049625.1 | Mab-21 family protein | - |
| ND447_RS17820 (ND447_17810) | 51182..51385 | - | 204 | WP_145560260.1 | hypothetical protein | - |
| ND447_RS17825 (ND447_17815) | 51429..51935 | - | 507 | WP_234049661.1 | antirestriction protein ArdA | - |
| ND447_RS17830 (ND447_17820) | 51947..52132 | + | 186 | WP_267262813.1 | hypothetical protein | - |
| ND447_RS17835 (ND447_17825) | 52393..52635 | - | 243 | WP_234049627.1 | hypothetical protein | - |
| ND447_RS17840 (ND447_17830) | 52898..53827 | - | 930 | WP_234049628.1 | DUF1281 domain-containing protein | - |
| ND447_RS17845 (ND447_17835) | 54230..54466 | - | 237 | WP_267262814.1 | hypothetical protein | - |
| ND447_RS17850 (ND447_17840) | 54774..55337 | - | 564 | WP_267262815.1 | helix-turn-helix transcriptional regulator | - |
| ND447_RS17855 (ND447_17845) | 55436..55840 | - | 405 | WP_120806768.1 | plasmid partitioning/stability family protein | - |
| ND447_RS17860 (ND447_17850) | 55847..56824 | - | 978 | WP_267262816.1 | plasmid segregation protein ParM | - |
| ND447_RS17865 (ND447_17855) | 57081..57581 | - | 501 | WP_265317717.1 | hypothetical protein | - |
| ND447_RS17870 (ND447_17860) | 58003..58332 | - | 330 | WP_049615233.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| ND447_RS17875 (ND447_17865) | 58344..58634 | - | 291 | WP_049615238.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND447_RS17880 (ND447_17870) | 58772..59593 | - | 822 | WP_080991164.1 | N-6 DNA methylase | - |
| ND447_RS17885 (ND447_17875) | 59967..60392 | + | 426 | WP_234049632.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ND447_RS17890 (ND447_17880) | 60392..61648 | + | 1257 | WP_267262817.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| ND447_RS17895 (ND447_17885) | 61700..62056 | - | 357 | WP_267262818.1 | hypothetical protein | - |
| ND447_RS17900 (ND447_17890) | 62106..62333 | - | 228 | WP_145544398.1 | hypothetical protein | - |
| ND447_RS17905 (ND447_17895) | 62391..63011 | - | 621 | WP_226723006.1 | ParA family protein | - |
| ND447_RS17910 (ND447_17900) | 63369..63614 | - | 246 | WP_267262819.1 | helix-turn-helix transcriptional regulator | - |
| ND447_RS17915 (ND447_17905) | 63776..65116 | - | 1341 | WP_265317516.1 | hypothetical protein | - |
| ND447_RS17920 (ND447_17910) | 65117..65713 | - | 597 | WP_038251904.1 | hypothetical protein | - |
| ND447_RS17925 (ND447_17915) | 66040..66687 | + | 648 | WP_120806780.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND447_RS17930 (ND447_17920) | 68137..68355 | - | 219 | WP_265317525.1 | hypothetical protein | - |
| ND447_RS17935 (ND447_17925) | 68545..69444 | - | 900 | WP_139127572.1 | hypothetical protein | - |
| ND447_RS17940 (ND447_17930) | 70248..71198 | - | 951 | WP_126940197.1 | Replication protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|