MGE detailed information
MGE type: Conjugative plasmid MGE length: 89273 bp
Accession: NZ_CP098702 Location: 1..89273 Organism: Yersinia ruckeri strain NVI-5089 Replicon: plasmid pYR10
Accession: NZ_CP098702 Location: 1..89273 Organism: Yersinia ruckeri strain NVI-5089 Replicon: plasmid pYR10
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND440_RS17180 (ND440_17175) | 941..1534 | - | 594 | WP_265315966.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| ND440_RS17185 (ND440_17180) | 1695..4709 | + | 3015 | WP_265315967.1 | Tn3 family transposase ISEc63 | Transposase |
| ND440_RS17190 (ND440_17185) | 5047..5265 | + | 219 | WP_265317712.1 | hypothetical protein | - |
| ND440_RS17195 (ND440_17190) | 5586..6077 | + | 492 | WP_265317713.1 | hypothetical protein | - |
| ND440_RS17200 (ND440_17195) | 6111..6521 | - | 411 | Protein_5 | IS6 family transposase IS1635 | Transposase |
| ND440_RS17205 (ND440_17200) | 6559..7329 | - | 771 | WP_004722046.1 | HEPN domain-containing protein | - |
| ND440_RS17210 (ND440_17205) | 7728..8033 | + | 306 | WP_038277248.1 | hypothetical protein | - |
| ND440_RS17215 (ND440_17210) | 8345..8992 | - | 648 | WP_038251892.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND440_RS17220 (ND440_17215) | 9176..9961 | - | 786 | WP_265317517.1 | site-specific integrase | - |
| ND440_RS17225 (ND440_17220) | 10089..10664 | - | 576 | WP_265317518.1 | hypothetical protein | - |
| ND440_RS17230 (ND440_17225) | 10729..11079 | - | 351 | WP_265317519.1 | hypothetical protein | - |
| ND440_RS17235 (ND440_17230) | 11628..12209 | + | 582 | WP_265317714.1 | hypothetical protein | - |
| ND440_RS17240 (ND440_17235) | 12382..13437 | + | 1056 | WP_265317715.1 | Abi family protein | - |
| ND440_RS17245 (ND440_17240) | 13619..13879 | + | 261 | WP_265317716.1 | hypothetical protein | - |
| ND440_RS17250 (ND440_17245) | 14039..14284 | + | 246 | WP_265317515.1 | helix-turn-helix transcriptional regulator | - |
| ND440_RS17255 (ND440_17250) | 14649..15269 | + | 621 | WP_226723006.1 | ParA family protein | - |
| ND440_RS17260 (ND440_17255) | 15319..15546 | + | 228 | WP_145544398.1 | hypothetical protein | - |
| ND440_RS17265 (ND440_17260) | 16045..17301 | - | 1257 | WP_234049633.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| ND440_RS17270 (ND440_17265) | 17301..17726 | - | 426 | WP_234049632.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ND440_RS17275 (ND440_17270) | 18100..18921 | + | 822 | WP_080991164.1 | N-6 DNA methylase | - |
| ND440_RS17280 (ND440_17275) | 19059..19349 | + | 291 | WP_049615238.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND440_RS17285 (ND440_17280) | 19361..19690 | + | 330 | WP_049615233.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| ND440_RS17290 (ND440_17285) | 20112..20612 | + | 501 | WP_265317717.1 | hypothetical protein | - |
| ND440_RS17295 (ND440_17290) | 20869..21846 | + | 978 | WP_234049631.1 | plasmid segregation protein ParM | - |
| ND440_RS17300 (ND440_17295) | 21853..22257 | + | 405 | WP_265317718.1 | plasmid partitioning/stability family protein | - |
| ND440_RS17305 (ND440_17300) | 22356..22919 | + | 564 | WP_234049629.1 | helix-turn-helix transcriptional regulator | - |
| ND440_RS17310 (ND440_17305) | 23227..23463 | + | 237 | WP_073999971.1 | hypothetical protein | - |
| ND440_RS17315 (ND440_17310) | 23866..24795 | + | 930 | WP_234049628.1 | DUF1281 domain-containing protein | - |
| ND440_RS17320 (ND440_17315) | 25058..25300 | + | 243 | WP_234049627.1 | hypothetical protein | - |
| ND440_RS17325 (ND440_17320) | 25758..26264 | + | 507 | WP_234049661.1 | antirestriction protein ArdA | - |
| ND440_RS17330 (ND440_17325) | 26308..26511 | + | 204 | WP_145560260.1 | hypothetical protein | - |
| ND440_RS17335 (ND440_17330) | 27209..27490 | + | 282 | WP_234049625.1 | Mab-21 family protein | - |
| ND440_RS17340 (ND440_17335) | 27585..29600 | + | 2016 | WP_234049624.1 | ParB/RepB/Spo0J family partition protein | - |
| ND440_RS17345 (ND440_17340) | 29639..30085 | + | 447 | WP_050074451.1 | conjugation system SOS inhibitor PsiB | - |
| ND440_RS17350 (ND440_17345) | 30082..30843 | + | 762 | WP_234049623.1 | plasmid SOS inhibition protein A | - |
| ND440_RS17355 (ND440_17350) | 31745..31990 | + | 246 | WP_145544674.1 | hypothetical protein | - |
| ND440_RS17360 (ND440_17355) | 32042..32380 | + | 339 | WP_265317719.1 | hypothetical protein | - |
| ND440_RS17365 (ND440_17360) | 32467..32709 | + | 243 | WP_050074457.1 | hypothetical protein | - |
| ND440_RS17370 (ND440_17365) | 32764..33138 | + | 375 | WP_050074458.1 | hypothetical protein | - |
| ND440_RS17375 (ND440_17370) | 33579..34418 | + | 840 | WP_050074487.1 | DUF4942 domain-containing protein | - |
| ND440_RS17380 (ND440_17375) | 34902..35723 | + | 822 | WP_050289019.1 | DUF932 domain-containing protein | - |
| ND440_RS17385 (ND440_17380) | 35768..36079 | + | 312 | WP_050074459.1 | DUF5983 family protein | - |
| ND440_RS17390 (ND440_17385) | 36210..36548 | - | 339 | WP_050074460.1 | hypothetical protein | - |
| ND440_RS17395 (ND440_17390) | 36817..37167 | + | 351 | WP_265317720.1 | plasmid mobilization protein MobA | - |
| ND440_RS17400 (ND440_17395) | 37164..39119 | + | 1956 | WP_265317721.1 | hypothetical protein | Relaxase |
| ND440_RS17405 (ND440_17400) | 39180..39497 | - | 318 | WP_050289016.1 | hypothetical protein | - |
| ND440_RS17410 (ND440_17405) | 39507..40043 | - | 537 | WP_265317722.1 | hypothetical protein | VF |
| ND440_RS17415 (ND440_17410) | 40449..42626 | - | 2178 | WP_265317724.1 | F-type conjugative transfer protein TrbC | - |
| ND440_RS17420 (ND440_17415) | 42688..43689 | - | 1002 | WP_265317725.1 | hypothetical protein | - |
| ND440_RS17425 (ND440_17420) | 43712..45040 | - | 1329 | WP_265317726.1 | conjugal transfer protein TrbA | - |
| ND440_RS17430 (ND440_17425) | 45196..45723 | - | 528 | WP_050289011.1 | hypothetical protein | - |
| ND440_RS17435 (ND440_17430) | 45743..47854 | - | 2112 | WP_265317727.1 | DotA/TraY family protein | - |
| ND440_RS17440 (ND440_17435) | 47983..48588 | - | 606 | WP_226723032.1 | conjugal transfer protein TraX | - |
| ND440_RS17445 (ND440_17440) | 48581..49810 | - | 1230 | WP_120806751.1 | conjugal transfer protein TraW | - |
| ND440_RS17450 (ND440_17445) | 50001..53075 | - | 3075 | WP_120806750.1 | type IV secretory system conjugative DNA transfer family protein | - |
| ND440_RS17455 (ND440_17450) | 53078..53683 | - | 606 | WP_050074479.1 | hypothetical protein | - |
| ND440_RS17460 (ND440_17455) | 53774..54178 | - | 405 | WP_108088340.1 | hypothetical protein | - |
| ND440_RS17465 (ND440_17460) | 54193..54723 | - | 531 | WP_050074337.1 | conjugal transfer protein TraQ | - |
| ND440_RS17470 (ND440_17465) | 54732..55469 | - | 738 | WP_234049652.1 | hypothetical protein | - |
| ND440_RS17475 (ND440_17470) | 55469..56680 | - | 1212 | WP_265317532.1 | conjugal transfer protein TraO | - |
| ND440_RS17480 (ND440_17475) | 56685..57695 | - | 1011 | WP_050289002.1 | hypothetical protein | VF |
| ND440_RS17485 (ND440_17480) | 57698..58372 | - | 675 | WP_050074341.1 | hypothetical protein | VF |
| ND440_RS17490 (ND440_17485) | 58457..58942 | - | 486 | WP_234049650.1 | hypothetical protein | - |
| ND440_RS17495 (ND440_17490) | 58952..62140 | - | 3189 | WP_265317728.1 | DUF5710 domain-containing protein | - |
| ND440_RS17500 (ND440_17495) | 62199..62465 | - | 267 | WP_050074346.1 | IcmT/TraK family protein | - |
| ND440_RS17505 (ND440_17500) | 62465..63622 | - | 1158 | WP_265317729.1 | hypothetical protein | VF |
| ND440_RS17510 (ND440_17505) | 63609..63902 | - | 294 | WP_265317730.1 | hypothetical protein | - |
| ND440_RS17515 (ND440_17510) | 63936..64724 | - | 789 | WP_120806743.1 | hypothetical protein | VF |
| ND440_RS17520 (ND440_17515) | 64721..65176 | - | 456 | WP_120806742.1 | DotD/TraH family lipoprotein | - |
| ND440_RS17525 (ND440_17520) | 65221..66600 | - | 1380 | WP_265317731.1 | hypothetical protein | VF |
| ND440_RS17530 (ND440_17525) | 66590..67258 | - | 669 | WP_120806741.1 | prepilin peptidase | - |
| ND440_RS17535 (ND440_17530) | 67255..67725 | - | 471 | WP_234049647.1 | hypothetical protein | VF |
| ND440_RS17540 (ND440_17535) | 67735..68343 | - | 609 | WP_120806739.1 | hypothetical protein | VF |
| ND440_RS17545 (ND440_17540) | 68365..69492 | - | 1128 | WP_234049646.1 | hypothetical protein | VF |
| ND440_RS17550 (ND440_17545) | 69553..71055 | - | 1503 | WP_205582781.1 | hypothetical protein | VF |
| ND440_RS17555 (ND440_17550) | 71057..71593 | - | 537 | WP_234049644.1 | type IV pilus biogenesis protein PilP | - |
| ND440_RS17560 (ND440_17555) | 71580..72845 | - | 1266 | WP_120806788.1 | type 4b pilus protein PilO2 | - |
| ND440_RS17565 (ND440_17560) | 72850..74490 | - | 1641 | WP_120806787.1 | hypothetical protein | VF |
| ND440_RS17570 (ND440_17565) | 74501..74926 | - | 426 | WP_265317732.1 | type IV pilus biogenesis protein PilM | - |
| ND440_RS17575 (ND440_17570) | 74923..75930 | - | 1008 | WP_120806785.1 | hypothetical protein | VF |
| ND440_RS17580 (ND440_17575) | 76498..76980 | - | 483 | WP_120806783.1 | transcription termination/antitermination NusG family protein | - |
| ND440_RS17585 (ND440_17580) | 78150..79100 | + | 951 | WP_265317535.1 | Replication protein | - |
| ND440_RS17590 (ND440_17585) | 79904..80803 | + | 900 | WP_139127572.1 | hypothetical protein | - |
| ND440_RS17595 (ND440_17590) | 81107..82588 | - | 1482 | WP_265317733.1 | group II intron reverse transcriptase/maturase | - |
| ND440_RS17600 (ND440_17595) | 83867..85342 | + | 1476 | WP_265315964.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|