MGE detailed information
MGE type: Conjugative plasmid MGE length: 83000 bp
Accession: NZ_CP098698 Location: 1..83000 Organism: Yersinia ruckeri strain NVI-6614 Replicon: plasmid pYR6
Accession: NZ_CP098698 Location: 1..83000 Organism: Yersinia ruckeri strain NVI-6614 Replicon: plasmid pYR6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND449_RS17135 (ND449_17120) | 785..1684 | + | 900 | WP_139127572.1 | hypothetical protein | - |
| ND449_RS17140 (ND449_17125) | 1879..2097 | + | 219 | WP_265317712.1 | hypothetical protein | - |
| ND449_RS17145 (ND449_17130) | 2418..2909 | + | 492 | WP_265317713.1 | hypothetical protein | - |
| ND449_RS17150 (ND449_17135) | 2943..3353 | - | 411 | Protein_3 | IS6 family transposase IS1635 | Transposase |
| ND449_RS17155 (ND449_17140) | 3391..4161 | - | 771 | WP_004722046.1 | HEPN domain-containing protein | - |
| ND449_RS17160 (ND449_17145) | 4554..5201 | - | 648 | WP_038251892.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND449_RS17165 (ND449_17150) | 5492..6088 | + | 597 | WP_038251904.1 | hypothetical protein | - |
| ND449_RS17170 (ND449_17155) | 6089..7429 | + | 1341 | WP_267257513.1 | hypothetical protein | - |
| ND449_RS17175 (ND449_17160) | 7589..7834 | + | 246 | WP_265317515.1 | helix-turn-helix transcriptional regulator | - |
| ND449_RS17180 (ND449_17165) | 8199..8819 | + | 621 | WP_226723006.1 | ParA family protein | - |
| ND449_RS17185 (ND449_17170) | 8869..9096 | + | 228 | WP_145544398.1 | hypothetical protein | - |
| ND449_RS17190 (ND449_17175) | 9571..10530 | - | 960 | WP_267257523.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| ND449_RS17195 (ND449_17180) | 10771..12846 | + | 2076 | WP_267257514.1 | AAA family ATPase | - |
| ND449_RS17200 (ND449_17185) | 12843..15050 | + | 2208 | WP_267257515.1 | UvrD-helicase domain-containing protein | - |
| ND449_RS17205 (ND449_17190) | 15284..15706 | - | 423 | WP_267257524.1 | hypothetical protein | - |
| ND449_RS17210 (ND449_17195) | 15729..17768 | - | 2040 | WP_267257516.1 | hypothetical protein | - |
| ND449_RS17215 (ND449_17200) | 17765..19495 | - | 1731 | WP_267257517.1 | site-specific integrase | - |
| ND449_RS17220 (ND449_17205) | 19488..20777 | - | 1290 | WP_267257518.1 | site-specific integrase | - |
| ND449_RS17225 (ND449_17210) | 20796..21158 | - | 363 | WP_267257519.1 | hypothetical protein | - |
| ND449_RS17230 (ND449_17215) | 21158..21583 | - | 426 | WP_267257520.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ND449_RS17235 (ND449_17220) | 21957..22778 | + | 822 | WP_080991164.1 | N-6 DNA methylase | - |
| ND449_RS17240 (ND449_17225) | 22916..23206 | + | 291 | WP_049615238.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND449_RS17245 (ND449_17230) | 23218..23547 | + | 330 | WP_049615233.1 | HigA family addiction module antitoxin | Antitoxin Detail |
| ND449_RS17250 (ND449_17235) | 23969..24469 | + | 501 | WP_265317717.1 | hypothetical protein | - |
| ND449_RS17255 (ND449_17240) | 24726..25703 | + | 978 | WP_267257521.1 | plasmid segregation protein ParM | - |
| ND449_RS17260 (ND449_17245) | 25710..26114 | + | 405 | WP_234049630.1 | plasmid partitioning/stability family protein | - |
| ND449_RS17265 (ND449_17250) | 26213..26776 | + | 564 | WP_234049629.1 | helix-turn-helix transcriptional regulator | - |
| ND449_RS17270 (ND449_17255) | 27084..27320 | + | 237 | WP_073999971.1 | hypothetical protein | - |
| ND449_RS17275 (ND449_17260) | 27723..28652 | + | 930 | WP_234049628.1 | DUF1281 domain-containing protein | - |
| ND449_RS17280 (ND449_17265) | 28915..29157 | + | 243 | WP_234049627.1 | hypothetical protein | - |
| ND449_RS17285 (ND449_17270) | 29418..29603 | - | 186 | WP_234049626.1 | hypothetical protein | - |
| ND449_RS17290 (ND449_17275) | 29615..30121 | + | 507 | WP_267257525.1 | antirestriction protein ArdA | - |
| ND449_RS17295 (ND449_17280) | 30165..30368 | + | 204 | WP_145560260.1 | hypothetical protein | - |
| ND449_RS17300 (ND449_17285) | 31070..31351 | + | 282 | WP_234049625.1 | Mab-21 family protein | - |
| ND449_RS17305 (ND449_17290) | 31446..33461 | + | 2016 | WP_050289021.1 | ParB/RepB/Spo0J family partition protein | - |
| ND449_RS17310 (ND449_17295) | 33500..33946 | + | 447 | WP_050074451.1 | conjugation system SOS inhibitor PsiB | - |
| ND449_RS17315 (ND449_17300) | 33943..34704 | + | 762 | WP_050074452.1 | plasmid SOS inhibition protein A | - |
| ND449_RS17320 (ND449_17305) | 35606..35851 | + | 246 | WP_145544674.1 | hypothetical protein | - |
| ND449_RS17325 (ND449_17310) | 35903..36241 | + | 339 | WP_050074456.1 | hypothetical protein | - |
| ND449_RS17330 (ND449_17315) | 36328..36570 | + | 243 | WP_050074457.1 | hypothetical protein | - |
| ND449_RS17335 (ND449_17320) | 36625..36999 | + | 375 | WP_050074458.1 | hypothetical protein | - |
| ND449_RS17340 (ND449_17325) | 37440..38279 | + | 840 | WP_050074487.1 | DUF4942 domain-containing protein | - |
| ND449_RS17345 (ND449_17330) | 38763..39584 | + | 822 | WP_050289019.1 | DUF932 domain-containing protein | - |
| ND449_RS17350 (ND449_17335) | 39629..39940 | + | 312 | WP_050074459.1 | DUF5983 family protein | - |
| ND449_RS17355 (ND449_17340) | 40071..40409 | - | 339 | WP_050074460.1 | hypothetical protein | - |
| ND449_RS17360 (ND449_17345) | 40678..41028 | + | 351 | WP_050074462.1 | plasmid mobilization protein MobA | - |
| ND449_RS17365 (ND449_17350) | 41025..42980 | + | 1956 | WP_267257522.1 | hypothetical protein | Relaxase |
| ND449_RS17370 (ND449_17355) | 43041..43358 | - | 318 | WP_050289016.1 | hypothetical protein | - |
| ND449_RS17375 (ND449_17360) | 43368..43826 | - | 459 | WP_144417027.1 | hypothetical protein | VF |
| ND449_RS17380 (ND449_17365) | 43922..44227 | - | 306 | WP_265317723.1 | hypothetical protein | - |
| ND449_RS17385 (ND449_17370) | 44310..46487 | - | 2178 | WP_267257502.1 | F-type conjugative transfer protein TrbC | - |
| ND449_RS17390 (ND449_17375) | 46549..47550 | - | 1002 | WP_267257503.1 | hypothetical protein | - |
| ND449_RS17395 (ND449_17380) | 47573..48889 | - | 1317 | WP_267257504.1 | conjugal transfer protein TrbA | - |
| ND449_RS17400 (ND449_17385) | 49037..49609 | - | 573 | WP_088130798.1 | hypothetical protein | - |
| ND449_RS17405 (ND449_17390) | 49621..51741 | - | 2121 | WP_234049654.1 | DotA/TraY family protein | - |
| ND449_RS17410 (ND449_17395) | 51870..52475 | - | 606 | WP_050289008.1 | conjugal transfer protein TraX | - |
| ND449_RS17415 (ND449_17400) | 52468..53697 | - | 1230 | WP_267257505.1 | conjugal transfer protein TraW | - |
| ND449_RS17420 (ND449_17405) | 53888..56962 | - | 3075 | WP_120806750.1 | type IV secretory system conjugative DNA transfer family protein | - |
| ND449_RS17425 (ND449_17410) | 56965..57570 | - | 606 | WP_267257506.1 | hypothetical protein | - |
| ND449_RS17430 (ND449_17415) | 57661..58065 | - | 405 | WP_108088340.1 | hypothetical protein | - |
| ND449_RS17435 (ND449_17420) | 58080..58610 | - | 531 | WP_050074337.1 | conjugal transfer protein TraQ | - |
| ND449_RS17440 (ND449_17425) | 58619..59356 | - | 738 | WP_234049652.1 | hypothetical protein | - |
| ND449_RS17445 (ND449_17430) | 59356..60567 | - | 1212 | WP_267257507.1 | conjugal transfer protein TraO | - |
| ND449_RS17450 (ND449_17435) | 60572..61582 | - | 1011 | WP_050289002.1 | hypothetical protein | VF |
| ND449_RS17455 (ND449_17440) | 61585..62259 | - | 675 | WP_050074341.1 | hypothetical protein | VF |
| ND449_RS17460 (ND449_17445) | 62344..62829 | - | 486 | WP_267257508.1 | hypothetical protein | - |
| ND449_RS17465 (ND449_17450) | 62839..66021 | - | 3183 | WP_267257509.1 | DUF5710 domain-containing protein | - |
| ND449_RS17470 (ND449_17455) | 66080..66346 | - | 267 | WP_050074346.1 | IcmT/TraK family protein | - |
| ND449_RS17475 (ND449_17460) | 66346..67503 | - | 1158 | WP_267257510.1 | hypothetical protein | VF |
| ND449_RS17480 (ND449_17465) | 67490..67783 | - | 294 | WP_267257511.1 | hypothetical protein | - |
| ND449_RS17485 (ND449_17470) | 67817..68605 | - | 789 | WP_120806743.1 | hypothetical protein | VF |
| ND449_RS17490 (ND449_17475) | 68602..69057 | - | 456 | WP_120806742.1 | DotD/TraH family lipoprotein | - |
| ND449_RS17495 (ND449_17480) | 69102..70481 | - | 1380 | WP_267257512.1 | hypothetical protein | VF |
| ND449_RS17500 (ND449_17485) | 70471..71139 | - | 669 | WP_120806741.1 | prepilin peptidase | - |
| ND449_RS17505 (ND449_17490) | 71136..71606 | - | 471 | WP_234049647.1 | hypothetical protein | VF |
| ND449_RS17510 (ND449_17495) | 71616..72224 | - | 609 | WP_120806739.1 | hypothetical protein | VF |
| ND449_RS17515 (ND449_17500) | 72246..73373 | - | 1128 | WP_234049646.1 | hypothetical protein | VF |
| ND449_RS17520 (ND449_17505) | 73434..74936 | - | 1503 | WP_205582781.1 | hypothetical protein | VF |
| ND449_RS17525 (ND449_17510) | 74938..75474 | - | 537 | WP_234049644.1 | type IV pilus biogenesis protein PilP | - |
| ND449_RS17530 (ND449_17515) | 75461..76726 | - | 1266 | WP_120806788.1 | type 4b pilus protein PilO2 | - |
| ND449_RS17535 (ND449_17520) | 76731..78371 | - | 1641 | WP_120806787.1 | hypothetical protein | VF |
| ND449_RS17540 (ND449_17525) | 78382..78807 | - | 426 | WP_234049643.1 | type IV pilus biogenesis protein PilM | - |
| ND449_RS17545 (ND449_17530) | 78804..79811 | - | 1008 | WP_265317530.1 | hypothetical protein | VF |
| ND449_RS17550 (ND449_17535) | 80379..80861 | - | 483 | WP_120806783.1 | transcription termination/antitermination NusG family protein | - |
| ND449_RS17555 (ND449_17540) | 82031..82981 | + | 951 | WP_126940197.1 | Replication protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|