MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 80847 bp
Accession: NZ_CP098696 Location: 1..80847 Organism: Yersinia ruckeri strain NVI-701 Replicon: plasmid pYR4
Accession: NZ_CP098696 Location: 1..80847 Organism: Yersinia ruckeri strain NVI-701 Replicon: plasmid pYR4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND443_RS17045 (ND443_17035) | 254..1177 | - | 924 | WP_126940188.1 | DUF2971 domain-containing protein | - |
| ND443_RS17050 (ND443_17040) | 1701..2657 | + | 957 | WP_126940187.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND443_RS17055 (ND443_17045) | 2858..3139 | - | 282 | WP_126940186.1 | ribbon-helix-helix domain-containing protein | - |
| ND443_RS17060 (ND443_17050) | 3173..3826 | - | 654 | WP_126940185.1 | AAA family ATPase | - |
| ND443_RS17065 (ND443_17055) | 4130..5104 | + | 975 | WP_126940201.1 | plasmid segregation protein ParM | - |
| ND443_RS17070 (ND443_17060) | 5106..5507 | + | 402 | WP_162486789.1 | plasmid partitioning/stability family protein | - |
| ND443_RS17075 (ND443_17065) | 5846..6316 | + | 471 | WP_126940183.1 | hypothetical protein | - |
| ND443_RS17080 (ND443_17070) | 6598..7377 | + | 780 | WP_126940182.1 | hypothetical protein | - |
| ND443_RS17085 (ND443_17075) | 7769..8275 | + | 507 | WP_126940180.1 | antirestriction protein ArdA | - |
| ND443_RS17090 (ND443_17080) | 8318..8518 | + | 201 | WP_126940179.1 | hypothetical protein | - |
| ND443_RS17095 (ND443_17085) | 9272..9628 | + | 357 | WP_126940178.1 | hypothetical protein | - |
| ND443_RS17100 (ND443_17090) | 9714..9860 | + | 147 | WP_126940177.1 | succinate dehydrogenase flavoprotein subunit | - |
| ND443_RS17105 (ND443_17095) | 9904..10716 | + | 813 | WP_238692894.1 | N-6 DNA methylase | - |
| ND443_RS17110 (ND443_17100) | 11475..11834 | + | 360 | WP_126940175.1 | DUF3085 domain-containing protein | - |
| ND443_RS17115 (ND443_17105) | 11831..12328 | + | 498 | WP_126940174.1 | hypothetical protein | - |
| ND443_RS17120 (ND443_17110) | 12336..12569 | - | 234 | WP_038251853.1 | hypothetical protein | - |
| ND443_RS17125 (ND443_17115) | 12721..13044 | + | 324 | WP_038251855.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND443_RS17130 (ND443_17120) | 13090..13386 | + | 297 | WP_004720859.1 | NadS family protein | Antitoxin Detail |
| ND443_RS17135 (ND443_17125) | 13874..14687 | + | 814 | Protein_19 | DUF932 domain-containing protein | - |
| ND443_RS17140 (ND443_17130) | 15226..15549 | - | 324 | WP_004720850.1 | hypothetical protein | - |
| ND443_RS17145 (ND443_17135) | 15818..16162 | + | 345 | WP_004720848.1 | plasmid mobilization protein MobA | - |
| ND443_RS17150 (ND443_17140) | 16164..18089 | + | 1926 | WP_004720847.1 | hypothetical protein | Relaxase |
| ND443_RS17155 (ND443_17145) | 18386..19435 | + | 1050 | WP_126940173.1 | Abi family protein | - |
| ND443_RS17160 (ND443_17150) | 19815..22517 | + | 2703 | WP_126940172.1 | DNA repair protein | - |
| ND443_RS17165 (ND443_17155) | 22618..23154 | - | 537 | WP_126940171.1 | Phospholipase D | VF |
| ND443_RS17170 (ND443_17160) | 23241..25541 | - | 2301 | WP_126940170.1 | hypothetical protein | VF |
| ND443_RS17175 (ND443_17165) | 25552..26616 | - | 1065 | WP_126940169.1 | DsbC family protein | - |
| ND443_RS17180 (ND443_17170) | 26621..27904 | - | 1284 | WP_004720838.1 | hypothetical protein | - |
| ND443_RS17185 (ND443_17175) | 28000..28680 | - | 681 | WP_038251860.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ND443_RS17190 (ND443_17180) | 28702..28920 | - | 219 | WP_038251862.1 | plasmid stabilization protein | - |
| ND443_RS17195 (ND443_17185) | 29026..31167 | - | 2142 | WP_126940168.1 | DotA/TraY family protein | - |
| ND443_RS17200 (ND443_17190) | 31234..31839 | - | 606 | WP_126940167.1 | conjugal transfer protein TraX | - |
| ND443_RS17205 (ND443_17195) | 31839..33032 | - | 1194 | WP_126940166.1 | conjugal transfer protein TraW | - |
| ND443_RS17210 (ND443_17200) | 33046..36123 | - | 3078 | WP_038251865.1 | conjugal transfer protein | - |
| ND443_RS17215 (ND443_17205) | 36146..37102 | - | 957 | WP_004720829.1 | hypothetical protein | - |
| ND443_RS17220 (ND443_17210) | 37163..37546 | - | 384 | WP_004720828.1 | hypothetical protein | - |
| ND443_RS17225 (ND443_17215) | 37571..38098 | - | 528 | WP_038251868.1 | conjugal transfer protein TraQ | - |
| ND443_RS17230 (ND443_17220) | 38098..38805 | - | 708 | WP_126940165.1 | hypothetical protein | - |
| ND443_RS17235 (ND443_17225) | 38865..40118 | - | 1254 | WP_126940164.1 | conjugal transfer protein TraO | - |
| ND443_RS17240 (ND443_17230) | 40121..41116 | - | 996 | WP_162486788.1 | hypothetical protein | VF |
| ND443_RS17245 (ND443_17235) | 41135..41857 | - | 723 | WP_004720818.1 | DotI/IcmL/TraM family protein | - |
| ND443_RS17250 (ND443_17240) | 41874..42332 | - | 459 | WP_238692899.1 | hypothetical protein | - |
| ND443_RS17255 (ND443_17245) | 42337..45690 | - | 3354 | WP_126940163.1 | DUF5710 domain-containing protein | - |
| ND443_RS17260 (ND443_17250) | 45706..45966 | - | 261 | WP_038251874.1 | IcmT/TraK family protein | - |
| ND443_RS17265 (ND443_17255) | 45963..47117 | - | 1155 | WP_126940162.1 | Twitching mobility protein | VF |
| ND443_RS17270 (ND443_17260) | 47117..47905 | - | 789 | WP_038251876.1 | hypothetical protein | VF |
| ND443_RS17275 (ND443_17265) | 47902..48357 | - | 456 | WP_004720812.1 | hypothetical protein | VF |
| ND443_RS17280 (ND443_17270) | 48883..50256 | - | 1374 | WP_099511713.1 | hypothetical protein | VF |
| ND443_RS17285 (ND443_17275) | 50253..50903 | - | 651 | WP_038251878.1 | hypothetical protein | VF |
| ND443_RS17290 (ND443_17280) | 50903..51388 | - | 486 | WP_004720806.1 | hypothetical protein | VF |
| ND443_RS17295 (ND443_17285) | 51450..52043 | - | 594 | WP_038251880.1 | hypothetical protein | VF |
| ND443_RS17300 (ND443_17290) | 52081..53223 | - | 1143 | WP_238692898.1 | hypothetical protein | VF |
| ND443_RS17305 (ND443_17295) | 53220..54713 | - | 1494 | WP_069971730.1 | hypothetical protein | VF |
| ND443_RS17310 (ND443_17300) | 54717..55304 | - | 588 | WP_049688157.1 | hypothetical protein | VF |
| ND443_RS17315 (ND443_17305) | 55291..56604 | - | 1314 | WP_038251882.1 | type 4b pilus protein PilO2 | - |
| ND443_RS17320 (ND443_17310) | 56608..57261 | - | 654 | WP_126940160.1 | hypothetical protein | - |
| ND443_RS17325 (ND443_17315) | 57336..58958 | - | 1623 | WP_248575002.1 | hypothetical protein | VF |
| ND443_RS17330 (ND443_17320) | 58979..59404 | - | 426 | WP_126940159.1 | type IV pilus biogenesis protein PilM | - |
| ND443_RS17335 (ND443_17325) | 59404..60447 | - | 1044 | WP_248579286.1 | hypothetical protein | VF |
| ND443_RS17340 (ND443_17330) | 60525..60725 | - | 201 | WP_004720790.1 | hypothetical protein | - |
| ND443_RS17345 (ND443_17335) | 60788..61489 | - | 702 | WP_004720789.1 | DUF2913 family protein | - |
| ND443_RS17350 (ND443_17340) | 61717..62226 | - | 510 | WP_004720786.1 | transcription termination/antitermination NusG family protein | - |
| ND443_RS17355 (ND443_17345) | 62521..62892 | + | 372 | WP_126940157.1 | helix-turn-helix transcriptional regulator | - |
| ND443_RS17360 (ND443_17350) | 63189..63350 | + | 162 | WP_004720783.1 | hypothetical protein | - |
| ND443_RS17365 (ND443_17355) | 63407..64117 | - | 711 | WP_126940156.1 | PAS domain-containing protein | - |
| ND443_RS17370 (ND443_17360) | 65014..65964 | + | 951 | WP_126940197.1 | Replication protein | - |
| ND443_RS17375 (ND443_17365) | 66995..67360 | - | 366 | Protein_67 | Tn3 family transposase | - |
| ND443_RS17380 (ND443_17370) | 67649..68851 | - | 1203 | WP_126940155.1 | hypothetical protein | - |
| ND443_RS17385 (ND443_17375) | 69320..69910 | + | 591 | WP_126940154.1 | plasmid pRiA4b ORF-3 family protein | - |
| ND443_RS17390 (ND443_17380) | 70042..70614 | + | 573 | WP_126940153.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| ND443_RS17395 (ND443_17385) | 70651..72048 | + | 1398 | WP_126940152.1 | ISKra4 family transposase ISEc51 | Transposase |
| ND443_RS17400 (ND443_17390) | 72484..72565 | + | 82 | Protein_72 | regulator protein FrmR | - |
| ND443_RS17405 (ND443_17395) | 72571..72728 | + | 158 | Protein_73 | IS5 family transposase ISSba21 | Transposase |
| ND443_RS17410 (ND443_17400) | 72846..73997 | + | 1152 | WP_126940151.1 | Alcohol dehydrogenase 2 | VF |
| ND443_RS17415 (ND443_17405) | 74226..74501 | + | 276 | WP_126940150.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| ND443_RS17420 (ND443_17410) | 74536..75645 | + | 1110 | WP_126940149.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| ND443_RS17425 (ND443_17415) | 75689..76087 | + | 399 | WP_126940196.1 | VOC family protein | - |
| ND443_RS17430 (ND443_17420) | 76157..76993 | + | 837 | WP_126940195.1 | S-formylglutathione hydrolase | - |
| ND443_RS17435 (ND443_17425) | 77021..77257 | - | 237 | Protein_79 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND443_RS17440 (ND443_17430) | 77482..78060 | + | 579 | WP_126940193.1 | hypothetical protein | - |
| ND443_RS17445 (ND443_17435) | 78134..78829 | - | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
| ND443_RS17450 (ND443_17440) | 78877..79104 | - | 228 | WP_126940191.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| ND443_RS17455 (ND443_17445) | 79348..79995 | + | 648 | WP_126940190.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ND443_RS17460 (ND443_17450) | 80089..80784 | - | 696 | WP_126940189.1 | IS6 family transposase ISEas1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|