MGE detailed information
MGE type: Prophage MGE length: 76404 bp
Accession: NZ_CP098695 Location: 2008067..2084470 Organism: Yersinia ruckeri strain NVI-701 Replicon: chromosome
Accession: NZ_CP098695 Location: 2008067..2084470 Organism: Yersinia ruckeri strain NVI-701 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND443_RS09040 (ND443_09025) | 2003306..2004553 | + | 1248 | WP_071704468.1 | membrane integrity lipid transport subunit YebS | - |
| ND443_RS09045 (ND443_09030) | 2004522..2007152 | + | 2631 | WP_038276011.1 | PqiB family protein | - |
| ND443_RS09050 (ND443_09035) | 2008067..2009776 | + | 1710 | WP_004721693.1 | diguanylate cyclase | - |
| ND443_RS09055 (ND443_09040) | 2009887..2010129 | + | 243 | WP_004721695.1 | DUF1480 family protein | - |
| ND443_RS09060 (ND443_09045) | 2010249..2010647 | - | 399 | WP_004721697.1 | ASCH domain-containing protein | - |
| ND443_RS09065 (ND443_09050) | 2010791..2010910 | + | 120 | WP_230675747.1 | small membrane protein YniD | - |
| ND443_RS09070 (ND443_09055) | 2010907..2011077 | - | 171 | WP_004721699.1 | YnfU family zinc-binding protein | - |
| ND443_RS09075 (ND443_09060) | 2011317..2011550 | - | 234 | WP_004721700.1 | hypothetical protein | - |
| ND443_RS09080 (ND443_09065) | 2012077..2012736 | - | 660 | WP_038242727.1 | DUF799 domain-containing protein | - |
| ND443_RS09085 (ND443_09070) | 2012733..2013089 | - | 357 | WP_038242728.1 | DUF4810 domain-containing protein | - |
| ND443_RS09090 (ND443_09075) | 2013108..2013779 | - | 672 | WP_038251427.1 | CsgG/HfaB family protein | - |
| ND443_RS09095 (ND443_09080) | 2014592..2014771 | + | 180 | WP_038242732.1 | GhoT/OrtT family toxin | - |
| ND443_RS09100 (ND443_09085) | 2015311..2015694 | - | 384 | WP_238692839.1 | hypothetical protein | - |
| ND443_RS09105 (ND443_09090) | 2016902..2017531 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| ND443_RS09110 (ND443_09095) | 2017738..2018424 | + | 687 | WP_004721715.1 | hypothetical protein | - |
| ND443_RS09115 (ND443_09100) | 2019165..2020310 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| ND443_RS09120 (ND443_09105) | 2020387..2021034 | + | 648 | WP_238692846.1 | hypothetical protein ; Integrase | Integrase |
| ND443_RS09125 (ND443_09110) | 2021333..2021500 | + | 168 | WP_193553623.1 | hypothetical protein | - |
| ND443_RS09130 (ND443_09115) | 2021805..2024096 | - | 2292 | WP_096823432.1 | AAA family ATPase | - |
| ND443_RS09135 (ND443_09120) | 2024580..2026307 | - | 1728 | WP_096823433.1 | ISNCY family transposase ISPa4 | Transposase |
| ND443_RS09140 (ND443_09125) | 2026552..2034900 | - | 8349 | WP_096823434.1 | LPD5 domain-containing protein | - |
| ND443_RS09145 (ND443_09130) | 2035166..2035327 | - | 162 | WP_157836120.1 | hypothetical protein | - |
| ND443_RS09150 (ND443_09135) | 2035402..2036790 | - | 1389 | WP_096823435.1 | hypothetical protein | - |
| ND443_RS09155 (ND443_09140) | 2036803..2037063 | - | 261 | WP_096823436.1 | bacteriocin | - |
| ND443_RS09160 (ND443_09145) | 2037063..2037446 | - | 384 | WP_096823437.1 | hypothetical protein | - |
| ND443_RS09165 (ND443_09150) | 2037449..2038108 | - | 660 | WP_096823438.1 | hypothetical protein | - |
| ND443_RS09170 (ND443_09155) | 2038364..2038738 | - | 375 | WP_096823439.1 | hypothetical protein | - |
| ND443_RS09175 (ND443_09160) | 2038713..2039741 | - | 1029 | WP_096823440.1 | hypothetical protein | - |
| ND443_RS09180 (ND443_09165) | 2039808..2041022 | - | 1215 | WP_038246004.1 | DUF1983 domain-containing protein | - |
| ND443_RS09185 (ND443_09170) | 2041019..2042647 | - | 1629 | WP_096823441.1 | hypothetical protein | - |
| ND443_RS09190 (ND443_09175) | 2042973..2043404 | + | 432 | Protein_1785 | Hcp family type VI secretion system effector | - |
| ND443_RS09195 (ND443_09180) | 2043526..2043672 | - | 147 | WP_157836125.1 | hypothetical protein | - |
| ND443_RS09200 (ND443_09185) | 2044057..2046426 | - | 2370 | WP_096823442.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ND443_RS09205 (ND443_09190) | 2046423..2047076 | - | 654 | WP_096823443.1 | hypothetical protein | - |
| ND443_RS09210 (ND443_09195) | 2047076..2047663 | - | 588 | WP_096823444.1 | hypothetical protein | - |
| ND443_RS09215 (ND443_09200) | 2047666..2048106 | - | 441 | WP_038245291.1 | hypothetical protein | - |
| ND443_RS09220 (ND443_09205) | 2048161..2048544 | - | 384 | WP_096823445.1 | hypothetical protein | - |
| ND443_RS09225 (ND443_09210) | 2048607..2049830 | - | 1224 | WP_038245287.1 | N4-gp56 family major capsid protein | - |
| ND443_RS09230 (ND443_09215) | 2049891..2050943 | - | 1053 | WP_096823446.1 | hypothetical protein | - |
| ND443_RS09235 (ND443_09220) | 2051214..2053340 | - | 2127 | WP_096823447.1 | portal protein | - |
| ND443_RS09240 (ND443_09225) | 2053340..2055004 | - | 1665 | WP_096823679.1 | terminase | - |
| ND443_RS09245 (ND443_09230) | 2055043..2055900 | - | 858 | WP_096823448.1 | terminase | - |
| ND443_RS09250 (ND443_09235) | 2055966..2056310 | - | 345 | WP_051847063.1 | Gp49 family protein | - |
| ND443_RS09255 (ND443_09240) | 2056307..2056849 | - | 543 | WP_096823449.1 | DUF2570 domain-containing protein | - |
| ND443_RS09260 (ND443_09245) | 2056981..2057463 | - | 483 | WP_162486782.1 | lysozyme | - |
| ND443_RS09265 (ND443_09250) | 2057469..2057681 | - | 213 | WP_038245276.1 | class II holin family protein | - |
| ND443_RS09270 (ND443_09255) | 2057854..2058663 | - | 810 | WP_096823451.1 | hypothetical protein | - |
| ND443_RS09275 (ND443_09260) | 2058754..2059137 | - | 384 | WP_096823452.1 | hypothetical protein | - |
| ND443_RS09280 (ND443_09265) | 2059162..2059632 | - | 471 | WP_096823453.1 | VRR-NUC domain-containing protein | - |
| ND443_RS09285 (ND443_09270) | 2059625..2059957 | - | 333 | WP_096823454.1 | DUF1364 domain-containing protein | - |
| ND443_RS09290 (ND443_09275) | 2059959..2060606 | - | 648 | WP_096823455.1 | DUF1367 family protein | - |
| ND443_RS09295 (ND443_09280) | 2060603..2062615 | - | 2013 | WP_096823456.1 | MT-A70 family methyltransferase | - |
| ND443_RS09300 (ND443_09285) | 2062612..2063538 | - | 927 | WP_096823457.1 | site-specific DNA-methyltransferase | - |
| ND443_RS09305 (ND443_09290) | 2063535..2063882 | - | 348 | WP_096823458.1 | hypothetical protein | - |
| ND443_RS09310 (ND443_09295) | 2063882..2064052 | - | 171 | WP_238692875.1 | DNA translocase FtsK | - |
| ND443_RS09315 (ND443_09300) | 2064119..2065018 | - | 900 | Protein_1810 | recombination-associated protein RdgC | - |
| ND443_RS09320 (ND443_09305) | 2065022..2065795 | - | 774 | WP_096823460.1 | hypothetical protein | - |
| ND443_RS09325 (ND443_09310) | 2065798..2066643 | - | 846 | WP_096823461.1 | hypothetical protein | - |
| ND443_RS09330 (ND443_09315) | 2066652..2066831 | - | 180 | WP_096823462.1 | hypothetical protein | - |
| ND443_RS09335 (ND443_09320) | 2066828..2067190 | - | 363 | WP_096823463.1 | hypothetical protein | - |
| ND443_RS09340 (ND443_09325) | 2067276..2067581 | + | 306 | WP_038243388.1 | hypothetical protein | - |
| ND443_RS09345 (ND443_09330) | 2067663..2067929 | - | 267 | WP_096823464.1 | hypothetical protein | - |
| ND443_RS09350 (ND443_09335) | 2068039..2068710 | + | 672 | WP_096823465.1 | S24 family peptidase | - |
| ND443_RS09355 (ND443_09340) | 2068726..2069076 | + | 351 | WP_096823466.1 | hypothetical protein | - |
| ND443_RS09360 (ND443_09345) | 2069350..2069595 | + | 246 | WP_126940131.1 | hypothetical protein | - |
| ND443_RS09365 (ND443_09350) | 2069678..2069947 | + | 270 | WP_096823468.1 | KTSC domain-containing protein | - |
| ND443_RS09370 (ND443_09355) | 2069987..2070457 | + | 471 | WP_096823469.1 | zinc-finger-containing protein | - |
| ND443_RS09375 (ND443_09360) | 2070473..2070799 | + | 327 | WP_126940132.1 | hypothetical protein | - |
| ND443_RS09380 (ND443_09365) | 2071100..2071945 | + | 846 | WP_238692848.1 | phage recombination protein Bet | - |
| ND443_RS09385 (ND443_09370) | 2071932..2073536 | + | 1605 | WP_096823471.1 | YqaJ viral recombinase family protein | - |
| ND443_RS09390 (ND443_09375) | 2073581..2074720 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND443_RS09395 (ND443_09380) | 2074717..2075145 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| ND443_RS09400 (ND443_09385) | 2075210..2076046 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| ND443_RS09405 (ND443_09390) | 2076190..2076363 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| ND443_RS09410 (ND443_09395) | 2076554..2076808 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| ND443_RS09415 (ND443_09400) | 2076925..2077194 | + | 270 | WP_096823474.1 | excisionase | - |
| ND443_RS09420 (ND443_09405) | 2077169..2078278 | + | 1110 | WP_162486764.1 | hypothetical protein ; Integrase | Integrase |
| - | 2078351..2078497 | + | 147 | - | - | Antitoxin Detail |
| - | 2078355..2078448 | - | 94 | - | - | Toxin Detail |
| ND443_RS09425 (ND443_09410) | 2078607..2078948 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND443_RS09430 (ND443_09415) | 2079043..2079927 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND443_RS09435 (ND443_09420) | 2079929..2080315 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND443_RS09440 (ND443_09425) | 2080720..2081235 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND443_RS09445 (ND443_09430) | 2081638..2081868 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND443_RS09450 (ND443_09435) | 2081991..2082941 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
| ND443_RS09455 (ND443_09440) | 2083808..2084470 | + | 663 | WP_038276020.1 | exodeoxyribonuclease X | - |
| ND443_RS09460 (ND443_09445) | 2084476..2086506 | - | 2031 | WP_038276022.1 | prolyl oligopeptidase family serine peptidase | - |
| ND443_RS09465 (ND443_09450) | 2086815..2087180 | - | 366 | WP_004721741.1 | protein YebF | - |
| ND443_RS09470 (ND443_09455) | 2087264..2087572 | - | 309 | WP_004721742.1 | N(4)-acetylcytidine aminohydrolase | - |
| ND443_RS09475 (ND443_09460) | 2087613..2087936 | - | 324 | WP_004721744.1 | YebG family protein | - |
| ND443_RS09480 (ND443_09465) | 2088073..2089455 | - | 1383 | WP_038243339.1 | ATP-dependent RNA helicase DbpA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|