Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078351..2078497 | Replicon | chromosome |
| Accession | NZ_CP098695 | ||
| Organism | Yersinia ruckeri strain NVI-701 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078355..2078448 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078351..2078497 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND443_RS09390 (ND443_09375) | 2073581..2074720 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND443_RS09395 (ND443_09380) | 2074717..2075145 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| ND443_RS09400 (ND443_09385) | 2075210..2076046 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| ND443_RS09405 (ND443_09390) | 2076190..2076363 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| ND443_RS09410 (ND443_09395) | 2076554..2076808 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| ND443_RS09415 (ND443_09400) | 2076925..2077194 | + | 270 | WP_096823474.1 | excisionase | - |
| ND443_RS09420 (ND443_09405) | 2077169..2078278 | + | 1110 | WP_162486764.1 | tyrosine-type recombinase/integrase | - |
| - | 2078351..2078497 | + | 147 | - | - | Antitoxin |
| - | 2078355..2078448 | - | 94 | - | - | Toxin |
| ND443_RS09425 (ND443_09410) | 2078607..2078948 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND443_RS09430 (ND443_09415) | 2079043..2079927 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND443_RS09435 (ND443_09420) | 2079929..2080315 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND443_RS09440 (ND443_09425) | 2080720..2081235 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND443_RS09445 (ND443_09430) | 2081638..2081868 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND443_RS09450 (ND443_09435) | 2081991..2082941 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2008067..2084470 | 76403 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247787 NZ_CP098695:c2078448-2078355 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT247787 NZ_CP098695:2078351-2078497 [Yersinia ruckeri]
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
