MGE detailed information
MGE type: Prophage MGE length: 39506 bp
Accession: NZ_CP098227 Location: 2290074..2329579 Organism: Escherichia coli strain XJ6-3 Replicon: chromosome
Accession: NZ_CP098227 Location: 2290074..2329579 Organism: Escherichia coli strain XJ6-3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFZ54_RS11035 (2285974) | 2285974..2287194 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| KFZ54_RS11040 (2287319) | 2287319..2288014 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| KFZ54_RS11045 (2287967) | 2287967..2289259 | - | 1293 | WP_071524606.1 | voltage-gated ClC-type chloride channel ClcB | - |
| KFZ54_RS11050 (2289417) | 2289417..2290031 | - | 615 | WP_047624846.1 | Tat proofreading chaperone DmsD | - |
| KFZ54_RS11055 (2290074) | 2290074..2290928 | - | 855 | WP_000526477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| KFZ54_RS11060 (2290930) | 2290930..2291547 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| KFZ54_RS11065 (2291558) | 2291558..2293981 | - | 2424 | WP_077773446.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KFZ54_RS11070 (2294042) | 2294042..2296468 | - | 2427 | WP_088376224.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| KFZ54_RS11075 (2296666) | 2296666..2296971 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| KFZ54_RS11080 (2297079) | 2297079..2297789 | + | 711 | WP_072129879.1 | YnfC family lipoprotein | - |
| KFZ54_RS11085 (2297792) | 2297792..2298352 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| KFZ54_RS11090 (2298387) | 2298387..2298728 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| KFZ54_RS11095 (2298863) | 2298863..2299189 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| KFZ54_RS11100 (2299395) | 2299395..2300609 | + | 1215 | WP_088376225.1 | starvation-sensing protein RspA | - |
| KFZ54_RS11105 (2300621) | 2300621..2301640 | + | 1020 | WP_088376226.1 | Zn-dependent oxidoreductase | - |
| KFZ54_RS11110 (2301828) | 2301828..2303108 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| KFZ54_RS11115 (2303143) | 2303143..2303394 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| KFZ54_RS11120 (2303467) | 2303467..2305176 | - | 1710 | Protein_2173 | 3'-5' exoribonuclease | - |
| KFZ54_RS11125 (2305164) | 2305164..2305421 | + | 258 | Protein_2174 | hypothetical protein | - |
| KFZ54_RS11130 (2305462) | 2305462..2305884 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| KFZ54_RS11135 (2305881) | 2305881..2306370 | + | 490 | Protein_2176 | class I SAM-dependent methyltransferase | - |
| KFZ54_RS11140 (2306848) | 2306848..2307269 | + | 422 | Protein_2177 | hypothetical protein | - |
| KFZ54_RS11145 (2307925) | 2307925..2308995 | + | 1071 | Protein_2178 | ISNCY family transposase ISCARN112 | Transposase |
| KFZ54_RS11150 (2309068) | 2309068..2309217 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| KFZ54_RS11155 (2309654) | 2309654..2309986 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KFZ54_RS11160 (2310189) | 2310189..2310494 | - | 306 | WP_001326990.1 | protein YdfV | - |
| KFZ54_RS11165 (2310519) | 2310519..2310758 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KFZ54_RS11170 (2310758) | 2310758..2311045 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KFZ54_RS11175 (2311117) | 2311117..2311272 | + | 156 | WP_088376227.1 | type I toxin-antitoxin system toxin HokD | - |
| KFZ54_RS11180 (2311489) | 2311489..2311740 | + | 252 | WP_000980994.1 | protein Rem | - |
| KFZ54_RS11185 (2311807) | 2311807..2312085 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| KFZ54_RS11190 (2312087) | 2312087..2313136 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| KFZ54_RS11195 (2313150) | 2313150..2313902 | + | 753 | WP_001047135.1 | antitermination protein | - |
| KFZ54_RS11200 (2314180) | 2314180..2314269 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| KFZ54_RS11205 (2314324) | 2314324..2314536 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KFZ54_RS11210 (2314837) | 2314837..2315052 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KFZ54_RS11215 (2315416) | 2315416..2315586 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KFZ54_RS11220 (2315806) | 2315806..2316021 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KFZ54_RS11225 (2316026) | 2316026..2316337 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| KFZ54_RS11230 (2316334) | 2316334..2316867 | + | 534 | WP_001092971.1 | lysozyme | - |
| KFZ54_RS11235 (2316864) | 2316864..2317361 | + | 498 | WP_032191976.1 | DUF2514 domain-containing protein | - |
| KFZ54_RS11240 (2317724) | 2317724..2317936 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KFZ54_RS11245 (2317947) | 2317947..2318135 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| KFZ54_RS11250 (2318138) | 2318138..2318203 | + | 66 | WP_123040679.1 | small protein YnfR | - |
| KFZ54_RS11255 (2318208) | 2318208..2318438 | + | 231 | WP_000720962.1 | protein YnfN | - |
| KFZ54_RS11260 (2318610) | 2318610..2318783 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KFZ54_RS11265 (2318935) | 2318935..2319345 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KFZ54_RS11270 (2319403) | 2319403..2319636 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KFZ54_RS11275 (2320025) | 2320025..2320570 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| KFZ54_RS11280 (2320545) | 2320545..2321591 | + | 1047 | Protein_2205 | phage terminase large subunit family protein | - |
| KFZ54_RS11285 (2321878) | 2321878..2323908 | + | 2031 | WP_047662356.1 | phage tail protein | - |
| KFZ54_RS11290 (2323908) | 2323908..2324483 | + | 576 | WP_088376228.1 | tail fiber assembly protein | - |
| KFZ54_RS11295 (2324581) | 2324581..2325171 | - | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KFZ54_RS11300 (2325488) | 2325488..2325721 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KFZ54_RS11305 (2325790) | 2325790..2325903 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KFZ54_RS11310 (2326507) | 2326507..2327790 | + | 1284 | Protein_2211 | MHS family MFS transporter YdfJ | - |
| KFZ54_RS11315 (2327880) | 2327880..2329340 | + | 1461 | WP_089534775.1 | mannitol dehydrogenase family protein | - |
| KFZ54_RS11320 (2329376) | 2329376..2329579 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KFZ54_RS11325 (2329756) | 2329756..2330442 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KFZ54_RS11330 (2330531) | 2330531..2331277 | - | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| KFZ54_RS11335 (2331414) | 2331414..2333459 | + | 2046 | WP_088376326.1 | peptidyl-dipeptidase Dcp | - |
| KFZ54_RS11340 (2333504) | 2333504..2334022 | - | 519 | WP_001024558.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|