MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 74814 bp
Accession: NZ_CP098201 Location: 4212887..4287700 Organism: Escherichia coli strain Z0117EC0056 Replicon: chromosome
Accession: NZ_CP098201 Location: 4212887..4287700 Organism: Escherichia coli strain Z0117EC0056 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY20_RS20210 (4208189) | 4208189..4209445 | + | 1257 | WP_001049791.1 | nucleoside permease NupG | - |
| NBY20_RS20215 (4209494) | 4209494..4211629 | - | 2136 | WP_001564026.1 | ornithine decarboxylase | - |
| NBY20_RS20220 (4211791) | 4211791..4211868 | - | 78 | WP_212734103.1 | hypothetical protein | - |
| NBY20_RS20225 (4212021) | 4212021..4212728 | + | 708 | WP_000234532.1 | DUF554 domain-containing protein | - |
| NBY20_RS20235 (4213107) | 4213107..4214372 | + | 1266 | WP_114502868.1 | Prophage integrase IntA ; Integrase | Integrase |
| NBY20_RS20240 (4214628) | 4214628..4215671 | + | 1044 | WP_000147018.1 | hypothetical protein | - |
| NBY20_RS20245 (4216201) | 4216201..4216898 | + | 698 | WP_224181008.1 | IS1 family transposase IS1A | Transposase |
| NBY20_RS20250 (4216915) | 4216915..4217706 | + | 792 | Protein_3951 | IS3 family transposase | - |
| NBY20_RS20255 (4217873) | 4217873..4218424 | + | 552 | WP_001447126.1 | Transcriptional repressor MprA | VF |
| NBY20_RS20265 (4219731) | 4219731..4221230 | - | 1500 | WP_021553054.1 | basic amino acid/polyamine antiporter | - |
| NBY20_RS20270 (4221305) | 4221305..4223674 | - | 2370 | WP_000671170.1 | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | - |
| NBY20_RS20275 (4223779) | 4223779..4225248 | - | 1470 | WP_001331566.1 | basic amino acid/polyamine antiporter | - |
| NBY20_RS20280 (4225502) | 4225502..4226195 | + | 694 | Protein_3957 | IS1 family transposase IS1N | Transposase |
| NBY20_RS20285 (4226814) | 4226814..4227161 | + | 348 | WP_001564031.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| NBY20_RS20290 (4227231) | 4227231..4227488 | + | 258 | Protein_3959 | IS3 family transposase IS911 | Transposase |
| NBY20_RS20295 (4227501) | 4227501..4227674 | - | 174 | Protein_3960 | hypothetical protein | - |
| NBY20_RS20300 (4227686) | 4227686..4228165 | - | 480 | Protein_3961 | IS3 family transposase IS629 | Transposase |
| NBY20_RS20305 (4228249) | 4228249..4229757 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| NBY20_RS25335 (4229796) | 4229796..4229918 | - | 123 | WP_001406634.1 | hypothetical protein | - |
| NBY20_RS20310 (4230430) | 4230430..4230813 | - | 384 | Protein_3964 | IS3 family transposase | - |
| NBY20_RS20315 (4230814) | 4230814..4231605 | + | 792 | Protein_3965 | ATP-dependent helicase | - |
| NBY20_RS20320 (4231653) | 4231653..4231976 | - | 324 | WP_001564033.1 | hypothetical protein | - |
| NBY20_RS20325 (4232041) | 4232041..4232685 | - | 645 | WP_001564034.1 | hypothetical protein | - |
| NBY20_RS20330 (4232706) | 4232706..4232975 | - | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| NBY20_RS20335 (4233054) | 4233054..4233692 | - | 639 | WP_001564035.1 | ParB N-terminal domain-containing protein | - |
| NBY20_RS20340 (4233677) | 4233677..4234909 | - | 1233 | WP_001564037.1 | phosphoadenosine phosphosulfate reductase | - |
| NBY20_RS20345 (4235050) | 4235050..4235694 | - | 645 | WP_024196335.1 | hypothetical protein | - |
| NBY20_RS20350 (4235811) | 4235811..4237158 | - | 1348 | Protein_3972 | VasL domain-containing protein | - |
| NBY20_RS20355 (4237210) | 4237210..4237396 | - | 187 | Protein_3973 | hypothetical protein | - |
| NBY20_RS20360 (4237552) | 4237552..4239297 | - | 1746 | WP_001564039.1 | NERD domain-containing protein/DEAD/DEAH box helicase | - |
| NBY20_RS20365 (4239440) | 4239440..4239700 | - | 261 | Protein_3975 | IS3 family transposase ISLad1 | Transposase |
| NBY20_RS25340 (4239845) | 4239845..4239973 | - | 129 | WP_001364398.1 | hypothetical protein | - |
| NBY20_RS20370 (4240421) | 4240421..4240612 | + | 192 | WP_001287883.1 | DUF4222 domain-containing protein | - |
| NBY20_RS20375 (4240665) | 4240665..4240898 | - | 234 | WP_000124185.1 | hypothetical protein | - |
| NBY20_RS20380 (4240994) | 4240994..4241494 | - | 501 | Protein_3979 | DNA-binding protein | - |
| NBY20_RS20385 (4241851) | 4241851..4242969 | + | 1119 | WP_000135343.1 | NAD-dependent methanol dehydrogenase | VF |
| NBY20_RS20390 (4243109) | 4243109..4243795 | + | 687 | WP_001109982.1 | propanediol utilization system phosphotransacylase GrpB | - |
| NBY20_RS20395 (4243850) | 4243850..4244608 | + | 759 | WP_001332070.1 | propanediol utilization system chaperone GrpC | - |
| NBY20_RS20400 (4244592) | 4244592..4245317 | + | 726 | WP_001329683.1 | propanediol utilization system flavoprotein GrpD | - |
| NBY20_RS20405 (4245329) | 4245329..4245598 | + | 270 | WP_001564041.1 | propanediol utilization microcompartment vertex protein GrpE | - |
| NBY20_RS20410 (4245626) | 4245626..4246123 | + | 498 | WP_001564042.1 | propanediol utilization system heme-binding protein GrpF | - |
| NBY20_RS20415 (4246152) | 4246152..4247348 | + | 1197 | WP_001362987.1 | propanediol utilization system propionate kinase GrpG | - |
| NBY20_RS20420 (4247633) | 4247633..4247914 | + | 282 | WP_001301171.1 | propanediol utilization system shell hexameric protein GrpH | - |
| NBY20_RS20425 (4247936) | 4247936..4248721 | + | 786 | WP_001205499.1 | propanediol utilization microcompartment protein GrpI | - |
| NBY20_RS20430 (4248782) | 4248782..4250299 | + | 1518 | WP_000997839.1 | N-succinylglutamate 5-semialdehyde dehydrogenase | VF |
| NBY20_RS20435 (4250323) | 4250323..4250622 | + | 300 | WP_000746009.1 | propanediol utilization system shell hexameric protein GrpK | - |
| NBY20_RS20440 (4250633) | 4250633..4251208 | + | 576 | WP_000722279.1 | propanediol utilization system protease GrpL | - |
| NBY20_RS20445 (4251257) | 4251257..4253809 | + | 2553 | WP_000890295.1 | glycyl radical diol dehydratase GrpM | - |
| NBY20_RS20450 (4253918) | 4253918..4254835 | + | 918 | WP_001564043.1 | glycyl radical diol dehydratase-activating enzyme GrpN | - |
| NBY20_RS20455 (4254972) | 4254972..4255877 | + | 906 | WP_001564044.1 | propanediol utilization system permease GrpO | - |
| NBY20_RS20460 (4256363) | 4256363..4256902 | + | 540 | WP_001564045.1 | hypothetical protein | - |
| NBY20_RS20465 (4256930) | 4256930..4257451 | + | 522 | WP_000237741.1 | reverse transcriptase domain-containing protein | - |
| NBY20_RS20470 (4258067) | 4258067..4259329 | + | 1263 | WP_001329690.1 | propanediol utilization sensor histidine kinase GrpP | - |
| NBY20_RS20475 (4259346) | 4259346..4260401 | + | 1056 | WP_001564046.1 | HTH-type transcriptional activator RhaR | VF |
| NBY20_RS20480 (4260530) | 4260530..4261681 | + | 1152 | WP_001001003.1 | propanediol utilization system methionine adenosyltransferase GrpR | - |
| NBY20_RS20485 (4261726) | 4261726..4262271 | + | 546 | WP_001564047.1 | propanediol utilization system shell hexameric protein GrpS | - |
| NBY20_RS20490 (4262628) | 4262628..4262813 | - | 186 | WP_223349228.1 | helix-turn-helix domain-containing protein | - |
| NBY20_RS20495 (4262944) | 4262944..4263615 | - | 672 | WP_223350500.1 | TetR/AcrR family transcriptional regulator | - |
| NBY20_RS20500 (4263715) | 4263715..4264872 | - | 1158 | Protein_4003 | Multidrug resistance protein MexB | VF |
| NBY20_RS20505 (4264963) | 4264963..4265229 | + | 267 | Protein_4004 | IS3 family transposase IS2 | Transposase |
| NBY20_RS20510 (4265215) | 4265215..4265277 | - | 63 | Protein_4005 | IS3 family transposase IS2 | Transposase |
| NBY20_RS25345 (4265406) | 4265406..4265531 | - | 126 | WP_001342704.1 | hypothetical protein | - |
| NBY20_RS20515 (4265528) | 4265528..4265761 | - | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| NBY20_RS20520 (4265830) | 4265830..4266405 | - | 576 | WP_001564054.1 | hypothetical protein | - |
| NBY20_RS20525 (4266663) | 4266663..4267229 | - | 567 | WP_001126810.1 | inovirus-type Gp2 protein | - |
| NBY20_RS20530 (4268530) | 4268530..4269624 | + | 1095 | WP_000370278.1 | sugar kinase | - |
| NBY20_RS20535 (4269643) | 4269643..4270893 | - | 1251 | WP_001328687.1 | NupC/NupG family nucleoside CNT transporter | - |
| NBY20_RS20540 (4270977) | 4270977..4271912 | - | 936 | WP_001290195.1 | pseudouridine-5'-phosphate glycosidase | - |
| NBY20_RS20545 (4271905) | 4271905..4272840 | - | 936 | WP_000332862.1 | pseudouridine kinase | - |
| NBY20_RS20550 (4273376) | 4273376..4273828 | - | 453 | WP_000558152.1 | acyltransferase | - |
| NBY20_RS20555 (4274349) | 4274349..4275080 | - | 732 | WP_001075495.1 | inovirus Gp2 family protein | - |
| NBY20_RS20560 (4275750) | 4275750..4276280 | + | 531 | WP_000778605.1 | hypothetical protein | - |
| NBY20_RS20565 (4277443) | 4277443..4278666 | - | 1224 | WP_231453681.1 | hypothetical protein | - |
| NBY20_RS20570 (4278767) | 4278767..4279651 | + | 885 | WP_001564055.1 | YfjP family GTPase | - |
| NBY20_RS20575 (4279854) | 4279854..4280534 | + | 681 | WP_001278649.1 | WYL domain-containing protein | - |
| NBY20_RS20580 (4280685) | 4280685..4281362 | + | 678 | WP_001596606.1 | hypothetical protein | - |
| NBY20_RS20585 (4281368) | 4281368..4281601 | + | 234 | WP_001278283.1 | DUF905 family protein | - |
| NBY20_RS20590 (4281691) | 4281691..4282509 | + | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| NBY20_RS20595 (4282600) | 4282600..4283085 | + | 486 | WP_000214398.1 | antirestriction protein | - |
| NBY20_RS20600 (4283101) | 4283101..4283577 | + | 477 | WP_001313574.1 | RadC family protein | - |
| NBY20_RS20605 (4283640) | 4283640..4283861 | + | 222 | WP_000692311.1 | DUF987 domain-containing protein | - |
| NBY20_RS20610 (4284024) | 4284024..4284392 | + | 369 | WP_001540478.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| NBY20_RS20615 (4284482) | 4284482..4284856 | + | 375 | WP_000854753.1 | TA system toxin CbtA family protein | Toxin Detail |
| NBY20_RS20620 (4284853) | 4284853..4285341 | + | 489 | WP_000777545.1 | DUF5983 family protein | - |
| NBY20_RS20625 (4285353) | 4285353..4285550 | + | 198 | WP_000839281.1 | DUF957 domain-containing protein | - |
| NBY20_RS20630 (4285647) | 4285647..4285934 | + | 288 | Protein_4030 | DUF4942 domain-containing protein | - |
| NBY20_RS20635 (4286006) | 4286006..4287010 | + | 1005 | WP_001179707.1 | IS110 family transposase ISSfl8 | Transposase |
| NBY20_RS20640 (4287292) | 4287292..4287573 | + | 282 | Protein_4032 | DUF4942 domain-containing protein | - |
| NBY20_RS20645 (4287916) | 4287916..4288086 | + | 171 | Protein_4033 | IS110 family transposase | - |
| NBY20_RS20650 (4288897) | 4288897..4289880 | + | 984 | WP_024946586.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| NBY20_RS20655 (4289952) | 4289952..4291100 | + | 1149 | WP_000905920.1 | capsule polysaccharide export inner-membrane protein KpsE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|