MGE detailed information
MGE type: Conjugative plasmid MGE length: 102319 bp
Accession: NZ_CP098198 Location: 1..102319 Organism: Escherichia coli strain Z0117EC0062 Replicon: plasmid pZ0117EC0062-1
Accession: NZ_CP098198 Location: 1..102319 Organism: Escherichia coli strain Z0117EC0062 Replicon: plasmid pZ0117EC0062-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY21_RS23835 (338) | 338..1891 | + | 1554 | WP_000362202.1 | hypothetical protein | VF |
| NBY21_RS23840 (1904) | 1904..3001 | + | 1098 | WP_001208805.1 | hypothetical protein | VF |
| NBY21_RS23845 (3019) | 3019..3633 | + | 615 | WP_000959785.1 | hypothetical protein | VF |
| NBY21_RS23850 (3643) | 3643..4203 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| NBY21_RS23855 (4188) | 4188..4844 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| NBY21_RS23860 (4844) | 4844..6136 | + | 1293 | WP_001417545.1 | hypothetical protein | VF |
| NBY21_RS23865 (6133) | 6133..6381 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| NBY21_RS23870 (7899) | 7899..9053 | + | 1155 | WP_001139957.1 | site-specific integrase | - |
| NBY21_RS23875 (9204) | 9204..10028 | + | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| NBY21_RS23880 (10113) | 10113..11315 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| NBY21_RS23885 (11375) | 11375..11959 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| NBY21_RS23890 (12354) | 12354..12812 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| NBY21_RS23895 (12809) | 12809..13627 | + | 819 | WP_000646098.1 | hypothetical protein | VF |
| NBY21_RS23900 (13624) | 13624..14772 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| NBY21_RS23905 (14769) | 14769..15059 | + | 291 | WP_001372180.1 | hypothetical protein | - |
| NBY21_RS23910 (15074) | 15074..15625 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| NBY21_RS23915 (15715) | 15715..19482 | + | 3768 | WP_001141542.1 | DUF5710 domain-containing protein | - |
| NBY21_RS23920 (19500) | 19500..19847 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NBY21_RS23925 (19844) | 19844..20536 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| NBY21_RS23930 (20547) | 20547..21530 | + | 984 | WP_001191878.1 | hypothetical protein | VF |
| NBY21_RS23935 (21533) | 21533..22822 | + | 1290 | WP_112021884.1 | conjugal transfer protein TraO | - |
| NBY21_RS23940 (22822) | 22822..23526 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| NBY21_RS23945 (23526) | 23526..24053 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NBY21_RS23950 (24104) | 24104..24508 | + | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| NBY21_RS23955 (24572) | 24572..24760 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| NBY21_RS23960 (24744) | 24744..25544 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| NBY21_RS23965 (25634) | 25634..28678 | + | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| NBY21_RS23970 (28678) | 28678..29292 | + | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| NBY21_RS23975 (29259) | 29259..30461 | + | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| NBY21_RS23980 (30490) | 30490..31074 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| NBY21_RS23985 (31171) | 31171..33339 | + | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| NBY21_RS23990 (33415) | 33415..34029 | + | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NBY21_RS23995 (34127) | 34127..34336 | + | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| NBY21_RS24000 (34545) | 34545..34721 | + | 177 | WP_001054904.1 | hypothetical protein | - |
| NBY21_RS25505 (34786) | 34786..34881 | - | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| NBY21_RS24010 (35382) | 35382..35633 | + | 252 | WP_001535703.1 | hypothetical protein | - |
| NBY21_RS24015 (35705) | 35705..35857 | - | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| - (35912) | 35912..35969 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (35912) | 35912..35969 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (35912) | 35912..35969 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (35912) | 35912..35969 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| NBY21_RS24020 (36149) | 36149..37357 | + | 1209 | WP_001535704.1 | IncI1-type conjugal transfer protein TrbA | - |
| NBY21_RS24025 (37376) | 37376..38446 | + | 1071 | WP_001535705.1 | IncI1-type conjugal transfer protein TrbB | - |
| NBY21_RS24030 (38439) | 38439..40730 | + | 2292 | WP_001289272.1 | F-type conjugative transfer protein TrbC | - |
| NBY21_RS24035 (40803) | 40803..41621 | - | 819 | WP_000106196.1 | DUF2971 domain-containing protein | - |
| NBY21_RS24040 (41744) | 41744..44446 | - | 2703 | WP_001493820.1 | hypothetical protein | Relaxase |
| NBY21_RS24045 (44457) | 44457..44789 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| NBY21_RS24050 (45023) | 45023..45358 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| NBY21_RS24055 (45444) | 45444..46292 | - | 849 | WP_001077033.1 | DUF4942 domain-containing protein | - |
| NBY21_RS24060 (46872) | 46872..47123 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| NBY21_RS24065 (47154) | 47154..47399 | - | 246 | WP_001260884.1 | hypothetical protein | - |
| NBY21_RS24070 (47399) | 47399..48337 | - | 939 | WP_000038336.1 | ISNCY family transposase ISRor2 | VF |
| NBY21_RS24075 (48402) | 48402..48668 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| NBY21_RS24080 (48760) | 48760..49194 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| NBY21_RS24085 (49923) | 49923..50423 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| NBY21_RS24090 (50886) | 50886..51482 | - | 597 | WP_001535708.1 | hypothetical protein | - |
| NBY21_RS24095 (51479) | 51479..52198 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| NBY21_RS24100 (52195) | 52195..52629 | - | 435 | WP_001535709.1 | conjugation system SOS inhibitor PsiB | - |
| NBY21_RS24105 (52684) | 52684..54642 | - | 1959 | WP_023231917.1 | ParB/RepB/Spo0J family partition protein | - |
| NBY21_RS24110 (54701) | 54701..54934 | - | 234 | WP_000006012.1 | DUF905 family protein | - |
| NBY21_RS24115 (54992) | 54992..55519 | - | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| NBY21_RS24120 (55888) | 55888..55956 | + | 69 | Protein_58 | pilus protein | - |
| NBY21_RS24125 (56290) | 56290..56481 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| NBY21_RS24130 (56478) | 56478..56900 | - | 423 | WP_001535711.1 | DUF1380 family protein | - |
| NBY21_RS24135 (56947) | 56947..57372 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| NBY21_RS24140 (57790) | 57790..58566 | - | 777 | WP_024135924.1 | hypothetical protein | - |
| NBY21_RS24145 (58617) | 58617..59135 | - | 519 | WP_225089741.1 | DUF1380 family protein | - |
| NBY21_RS24150 (59065) | 59065..59286 | - | 222 | WP_001104893.1 | hypothetical protein | - |
| NBY21_RS24155 (59287) | 59287..59970 | - | 684 | WP_000086148.1 | DNA methylase | - |
| NBY21_RS24160 (60046) | 60046..60357 | - | 312 | WP_014640311.1 | hypothetical protein | - |
| NBY21_RS24165 (60354) | 60354..61256 | - | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| NBY21_RS24170 (61674) | 61674..61922 | + | 249 | WP_000618111.1 | DinI-like family protein | - |
| NBY21_RS24175 (61919) | 61919..62356 | + | 438 | WP_000109072.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NBY21_RS24180 (62356) | 62356..63630 | + | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| NBY21_RS24185 (63632) | 63632..64048 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| NBY21_RS24190 (64041) | 64041..65021 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| NBY21_RS24195 (65434) | 65434..65742 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| NBY21_RS24200 (65829) | 65829..66473 | - | 645 | WP_001144036.1 | ParA family protein | - |
| NBY21_RS24205 (66653) | 66653..67432 | - | 780 | WP_001535715.1 | site-specific integrase | - |
| NBY21_RS24210 (67434) | 67434..67847 | - | 414 | WP_001535716.1 | hypothetical protein | - |
| NBY21_RS24215 (68647) | 68647..68937 | - | 291 | WP_001535717.1 | hypothetical protein | - |
| NBY21_RS24220 (68937) | 68937..70067 | - | 1131 | WP_000542418.1 | DUF4238 domain-containing protein | - |
| NBY21_RS24225 (70097) | 70097..71200 | - | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| NBY21_RS24230 (71529) | 71529..71786 | + | 258 | WP_000371888.1 | hypothetical protein | - |
| NBY21_RS24235 (71786) | 71786..72376 | + | 591 | WP_000194553.1 | hypothetical protein | - |
| NBY21_RS24240 (72641) | 72641..74197 | + | 1557 | WP_000818359.1 | AAA family ATPase | - |
| NBY21_RS24245 (74392) | 74392..75009 | + | 618 | WP_001535718.1 | ProQ/FINO family protein | - |
| NBY21_RS24250 (75068) | 75068..75523 | - | 456 | WP_001209678.1 | hypothetical protein | - |
| NBY21_RS24255 (75581) | 75581..77095 | - | 1515 | Protein_85 | Tn3-like element TnAs1 family transposase | - |
| NBY21_RS24260 (77161) | 77161..77866 | + | 706 | Protein_86 | IS6 family transposase IS26 | Transposase |
| NBY21_RS24265 (77920) | 77920..79275 | + | 1356 | Protein_87 | IS91 family transposase ISVsa3 | Transposase |
| NBY21_RS24270 (79306) | 79306..80190 | + | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| NBY21_RS24275 (80407) | 80407..81621 | + | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| NBY21_RS24280 (81649) | 81649..81954 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| NBY21_RS24285 (82066) | 82066..82254 | + | 189 | Protein_91 | IS91 family transposase | - |
| NBY21_RS24290 (82221) | 82221..83420 | - | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
| NBY21_RS24295 (83526) | 83526..84176 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| NBY21_RS24300 (84208) | 84208..84450 | - | 243 | WP_000844627.1 | transposase | - |
| NBY21_RS24305 (84764) | 84764..86512 | + | 1749 | Protein_95 | Tn3-like element TnAs3 family transposase | - |
| NBY21_RS24310 (86579) | 86579..86956 | + | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| NBY21_RS24315 (87228) | 87228..87925 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| NBY21_RS24320 (87988) | 87988..89448 | + | 1461 | WP_250840881.1 | IS66 family transposase ISPsy43 | VF |
| NBY21_RS24325 (89601) | 89601..90155 | - | 555 | WP_249941376.1 | hypothetical protein | - |
| NBY21_RS24330 (91064) | 91064..92095 | - | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| NBY21_RS24335 (93101) | 93101..93331 | + | 231 | WP_228772074.1 | ash family protein | - |
| NBY21_RS24340 (93249) | 93249..93536 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| NBY21_RS24345 (93978) | 93978..94511 | + | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| NBY21_RS24350 (94765) | 94765..95448 | + | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| NBY21_RS24355 (95462) | 95462..96028 | + | 567 | WP_000776428.1 | protein TraD | - |
| NBY21_RS24360 (96296) | 96296..96550 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| NBY21_RS24365 (96593) | 96593..97045 | + | 453 | WP_000008892.1 | hypothetical protein | - |
| NBY21_RS24370 (97719) | 97719..98786 | + | 1068 | WP_000742600.1 | hypothetical protein | VF |
| NBY21_RS24375 (98786) | 98786..99223 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| NBY21_RS24380 (99237) | 99237..100919 | + | 1683 | WP_000748143.1 | hypothetical protein | VF |
| NBY21_RS24385 (100912) | 100912..102207 | + | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|